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Article
Rapid Screening of Lanthipeptide Analogs via In-Colony Removal of Leader Peptides in Escherichia coli
Si, T., Tian, Q., Min, Y., Zhang, L., Sweedler, J. V., Van Der Donk, W. A. & Zhao, H., Sep 26 2018, In: Journal of the American Chemical Society. 140, 38, p. 11884-11888 5 p.Research output: Contribution to journal › Article › peer-review
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Seasonal adaptations of the hypothalamo-neurohypophyseal system of the dromedary camel
Alim, F. Z. D., Romanova, E. V., Tay, Y. L., Rahman, A. Y. B. A., Chan, K. G., Hong, K. W., Rogers, M., Southey, B. R., Greenwood, M. P., Mecawi, A. S., Mustafa, M. R., Mahy, N., Campbell, C., Antunes-Rodrigues, J., Sweedler, J. V., Murphy, D. & Hindmarch, C. C. T., Jun 2019, In: PloS one. 14, 6, e0216679.Research output: Contribution to journal › Article › peer-review
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Serotonin and its metabolism in basal deuterostomes: Insights from Strongylocentrotus purpuratus and Xenoturbella bocki
Squires, L. N., Rubakhin, S. S., Wadhams, A. A., Talbot, K. N., Nakano, H., Moroz, L. L. & Sweedler, J. V., Aug 1 2010, In: Journal of Experimental Biology. 213, 15, p. 2647-2654 8 p.Research output: Contribution to journal › Article › peer-review
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Single Cell Peptide Heterogeneity of Rat Islets of Langerhans
Jansson, E. T., Comi, T. J., Rubakhin, S. S. & Sweedler, J. V., Sep 16 2016, In: ACS chemical biology. 11, 9, p. 2588-2595 8 p.Research output: Contribution to journal › Article › peer-review
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Single Cell Profiling Using Ionic Liquid Matrix-Enhanced Secondary Ion Mass Spectrometry for Neuronal Cell Type Differentiation
Do, T. D., Comi, T. J., Dunham, S. J. B., Rubakhin, S. S. & Sweedler, J. V., Mar 7 2017, In: Analytical Chemistry. 89, 5, p. 3078-3086 9 p.Research output: Contribution to journal › Article › peer-review
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Single Synaptic Observation of Cholinergic Neurotransmission on Living Neurons: Concentration and Dynamics
Shen, M., Qu, Z., Deslaurier, J., Welle, T. M., Sweedler, J. V. & Chen, R., Jun 27 2018, In: Journal of the American Chemical Society. 140, 25, p. 7764-7768 5 p.Research output: Contribution to journal › Article › peer-review
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Small molecule analysis and imaging of fatty acids in the zebra finch song system using time-of-flight-secondary ion mass spectrometry
Amaya, K. R., Sweedler, J. V. & Clayton, D. F., Aug 2011, In: Journal of Neurochemistry. 118, 4, p. 499-511 13 p.Research output: Contribution to journal › Article › peer-review
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Spatial correlation of confocal raman scattering and secondary ion mass spectrometric molecular images of lignocellulosic materials
Li, Z., Chu, L. Q., Sweedler, J. V. & Bohn, P. W., Apr 1 2010, In: Analytical chemistry. 82, 7, p. 2608-2611 4 p.Research output: Contribution to journal › Article › peer-review
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Spatially dependent alkyl quinolone signaling responses to antibiotics in Pseudomonas aeruginosa swarms
Morales-Soto, N., Dunham, S. J. B., Baig, N. F., Ellis, J. F., Madukoma, C. S., Bohn, P. W., Sweedler, J. V. & Shrout, J. D., Jun 15 2018, In: Journal of Biological Chemistry. 293, 24, p. 9544-9552 9 p.Research output: Contribution to journal › Article › peer-review
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Spatial organization of pseudomonas aeruginosa biofilms probed by combined matrix-assisted laser desorption ionization mass spectrometry and confocal raman microscopy
Masyuko, R. N., Lanni, E. J., Driscoll, C. M., Shrout, J. D., Sweedler, J. V. & Bohn, P. W., Oct 15 2014, In: Analyst. 139, 22, p. 5700-5708 9 p.Research output: Contribution to journal › Article › peer-review
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Stretched tissue mounting for MALDI mass spectrometry imaging
Tucker, K. R., Lanni, E. J., Serebryannyy, L. A., Rubakhin, S. & Sweedler, J. V., Dec 1 2011, In: Analytical Chemistry. 83, 23, p. 9181-9185 5 p.Research output: Contribution to journal › Article › peer-review
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Synthesis, accumulation, and release of d-aspartate in the Aplysia californica CNS
Scanlan, C., Shi, T., Hatcher, N. G., Rubakhin, S. S. & Sweedler, J. V., Dec 2010, In: Journal of Neurochemistry. 115, 5, p. 1234-1244 11 p.Research output: Contribution to journal › Article › peer-review
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The ctenophore genome and the evolutionary origins of neural systems
Moroz, L. L., Kocot, K. M., Citarella, M. R., Dosung, S., Norekian, T. P., Povolotskaya, I. S., Grigorenko, A. P., Dailey, C., Berezikov, E., Buckley, K. M., Ptitsyn, A., Reshetov, D., Mukherjee, K., Moroz, T. P., Bobkova, Y., Yu, F., Kapitonov, V. V., Jurka, J., Bobkov, Y. V., Swore, J. J. & 16 others, , 2014, In: Nature. 510, 7503, p. 109-114 6 p.Research output: Contribution to journal › Article › peer-review
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The effects of aging on biosynthetic processes in the rat hypothalamic osmoregulatory neuroendocrine system
Greenwood, M. P., Greenwood, M., Romanova, E. V., Mecawi, A. S., Paterson, A., Sarenac, O., Japundžić-Žigon, N., Antunes-Rodrigues, J., Paton, J. F. R., Sweedler, J. V. & Murphy, D., May 2018, In: Neurobiology of Aging. 65, p. 178-191 14 p.Research output: Contribution to journal › Article › peer-review
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The genome of a songbird
Warren, W. C., Clayton, D. F., Ellegren, H., Arnold, A. P., Hillier, L. W., Künstner, A., Searle, S., White, S., Vilella, A. J., Fairley, S., Heger, A., Kong, L., Ponting, C. P., Jarvis, E. D., Mello, C. V., Minx, P., Lovell, P., Velho, T. A. F., Ferris, M., Balakrishnan, C. N. & 62 others, , Apr 1 2010, In: Nature. 464, 7289, p. 757-762 6 p.Research output: Contribution to journal › Article › peer-review
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The modified-bead stretched sample method: Development and application to MALDI-MS imaging of protein localization in the spinal cord
Tucker, K. R., Serebryannyy, L. A., Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., 2011, In: Chemical Science. 2, 4, p. 785-795 11 p.Research output: Contribution to journal › Article › peer-review
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The Notch effector gene Hes1 regulates migration of hypothalamic neurons, neuropeptide content and axon targeting to the pituitary
Aujla, P. K., Bora, A., Monahan, P., Sweedler, J. V. & Raetzman, L. T., May 1 2011, In: Developmental Biology. 353, 1, p. 61-71 11 p.Research output: Contribution to journal › Article › peer-review
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The zebra finch neuropeptidome: Prediction, detection and expression
Xie, F., London, S. E., Southey, B. R., Annangudi, S. P., Amare, A., Rodriguez-Zas, S. L., Clayton, D. F. & Sweedler, J. V., Apr 1 2010, In: BMC biology. 8, 28.Research output: Contribution to journal › Article › peer-review
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Three-dimensional mesostructures as high-temperature growth templates, electronic cellular scaffolds, and self-propelled microrobots
Yan, Z., Han, M., Shi, Y., Badea, A., Yang, Y., Kulkarni, A., Hanson, E., Kandel, M. E., Wen, X., Zhang, F., Luo, Y., Lin, Q., Zhang, H., Guo, X., Huang, Y., Nan, K., Jia, S., Oraham, A. W., Mevis, M. B., Lim, J. & 19 others, , Nov 7 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 45, p. E9455-E9464Research output: Contribution to journal › Article › peer-review
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Top-Down Proteomics Enables Comparative Analysis of Brain Proteoforms between Mouse Strains
Davis, R. G., Park, H. M., Kim, K., Greer, J. B., Fellers, R. T., Leduc, R. D., Romanova, E. V., Rubakhin, S. S., Zombeck, J. A., Wu, C., Yau, P. M., Gao, P., Van Nispen, A. J., Patrie, S. M., Thomas, P. M., Sweedler, J. V., Rhodes, J. S. & Kelleher, N. L., Mar 20 2018, In: Analytical Chemistry. 90, 6, p. 3802-3810 9 p.Research output: Contribution to journal › Article › peer-review
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Transcriptional Orchestration of the Regulated Secretory Pathway in Neurons by the bHLH protein DIMM
Hamanaka, Y., Park, D., Yin, P., Annangudi, S. P., Edwards, T. N., Sweedler, J., Meinertzhagen, I. A. & Taghert, P. H., Jan 12 2010, In: Current Biology. 20, 1, p. 9-18 10 p.Research output: Contribution to journal › Article › peer-review
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Book
Mass Spectrometry Imaging: Principles and Protocols
Rubakhin, S. (ed.) & Sweedler, J. V. (ed.), 2010, Humana Press. 488 p. (Methods in Molecular Biology; vol. 656)Research output: Book/Report/Conference proceeding › Book
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Methodologies for metabolomics: Experimental strategies and techniques
Lutz, N. W., Sweedler, J. V. & Wevers, R. A., Jan 1 2010, Cambridge University Press. 627 p.Research output: Book/Report/Conference proceeding › Book
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Chapter
A mass spectrometry primer for mass spectrometry imaging
Rubakhin, S. S. & Sweedler, J. V., 2010, Mass Spectrometry Imaging: Principles and Protocols. Rubakhin, S. & Sweedler, J. (eds.). p. 21-49 29 p. (Methods in Molecular Biology; vol. 656).Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Bioinformatics for prohormone and neuropeptide discovery
Southey, B. R., Romanova, E. V., Rodriguez-Zas, S. L. & Sweedler, J. V., 2018, Methods in Molecular Biology. Humana Press Inc., p. 71-96 26 p. (Methods in Molecular Biology; vol. 1719).Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Free D-aspartate in nonmammalian animals: Detection, localization, metabolism, and function
Patel, A. V., Kawai, T., Rubakhin, S. & Sweedler, J. V., Jan 1 2016, D-Amino Acids: Physiology, Metabolism, and Application. Springer Japan, p. 173-197 25 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Mass spectrometry–based methodologies for single-cell metabolite detection and identification
Knolhoff, A. M., Nemes, P., Rubakhin, S. & Sweedler, J. V., Jan 1 2010, Methodologies for Metabolomics: Experimental Strategies and Techniques. Cambridge University Press, p. 119-139 21 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Mass spectrometry imaging using the stretched sample approach
Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., 2010, Mass Spectrometry Imaging: Principles and Protocols. Rubakhin, S. & Sweedler, J. (eds.). p. 465-479 15 p. (Methods in Molecular Biology; vol. 656).Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Mass spectrometry of proteins
Romanova, E. V., Annangudi, S. P., Tai, H. C. & Sweedler, J. V., Jan 1 2016, The Curated Reference Collection in Neuroscience and Biobehavioral Psychology. Elsevier Science Ltd., p. 681-687 7 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Neuropeptidomics: Mass spectrometry-based qualitative and quantitative analysis
Yin, P., Hou, X., Romanova, E. V. & Sweedler, J. V., 2011, Neuropeptides: Methods and Protocols. Merighi, A. (ed.). p. 223-236 14 p. (Methods in Molecular Biology; vol. 789).Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Neuropeptidomics
Sweedler, J. V., Xie, F. & Bora, A., Sep 23 2011, Protein and Peptide Mass Spectrometry in Drug Discovery. John Wiley and Sons, p. 393-433 41 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Neuropeptidomics of the mammalian brain
Xie, F., Romanova, E. V. & Sweedler, J. V., Jun 3 2011, Neuroproteomics. Li, K. W. (ed.). p. 229-242 14 p. (Neuromethods; vol. 57).Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Neuropeptidomics of the mammalian brain
Xie, F., Anapindi, K. D. B., Romanova, E. V. & Sweedler, J. V., 2019, Neuromethods. Humana Press Inc., p. 161-177 17 p. (Neuromethods; vol. 146).Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Non-targeted identification of d-amino acid-containing peptides through enzymatic screening, chiral amino acid analysis, and LC-MS
Tai, H. C., Checco, J. W. & Sweedler, J. V., 2018, Methods in Molecular Biology. Humana Press Inc., p. 107-118 12 p. (Methods in Molecular Biology; vol. 1719).Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Single-Cell Mass Spectrometry
Knolhoff, A. M., Rubakhin, S. & Sweedler, J. V., Mar 19 2010, Chemical Cytometry: Ultrasensitive Analysis of Single Cells. Wiley-VCH, p. 197-218 22 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Conference contribution
Comparison of tandem mass spectrometry search methods to identify neuropeptides
Akhtar, M. N., Southey, B. R., Porter, K. I., Sweedler, J. V. & Rodriguez-Zas, S. L., 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 982-984 3 p. 6112530. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Evaluation of significance level assignment of database search programs using monte carlo permutation approach
Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Jan 1 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 103-107 5 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Integration of sequence and functional information to identify and annotate neuropeptides in the pig genome
Porter, K. I., Southey, B. R., Akhtar, M. N., Sweedler, J. V. & Rodriguez-Zas, S. L., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 988-990 3 p. 6112532. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Label-free molecular imaging of bacterial communities of the opportunistic pathogen Pseudomonas aeruginosa
Baig, N., Polisetti, S., Morales-Soto, N., Dunham, S. J. B., Sweedler, J. V., Shrout, J. D. & Bohn, P. W., 2016, Biosensing and Nanomedicine IX. Mohseni, H., Agahi, M. H. & Razeghi, M. (eds.). SPIE, 993004. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 9930).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Microscale transport physics during atomic force microscopy mass spectrometry and improved sampling efficiency
Moon, H., Comi, T. J., Dunham, S. J. B., Kwon, B., Sweedler, J. V. & King, W. P., Jul 26 2017, TRANSDUCERS 2017 - 19th International Conference on Solid-State Sensors, Actuators and Microsystems. Institute of Electrical and Electronics Engineers Inc., p. 24-27 4 p. 7993978. (TRANSDUCERS 2017 - 19th International Conference on Solid-State Sensors, Actuators and Microsystems).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Model of ion intensity from tandem mass spectra for improved peptide identification and simulation
Fazal, Z., Southey, B. R., Sadeque, A., Sweedler, J. V. & Rodriguez-Zas, S. L., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 994-996 3 p. 6112534. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Spatiotemporal dynamics of molecular messaging in bacterial co-cultures studied by multimodal chemical imaging
Cao, T., Morales-Soto, N., Jia, J., Baig, N. F., Dunham, S. J. B., Ellis, J., Sweedler, J. V., Shrout, J. D. & Bohn, P. W., 2019, Photonic Diagnosis and Treatment of Infections and Inflammatory Diseases II. Dai, T., Popp, J. & Wu, M. X. (eds.). SPIE, 108630A. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 10863).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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The mechanical sensitivity of vesicle dynamics in in vivo and in vitro neurons
Ahmed, W. W., Li, T. C., Rubakhin, S., Chiba, A., Sweedler, J. V. & Saif, M. T. A., Nov 23 2011, Technical Proceedings of the 2011 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2011. p. 436-439 4 p. (Technical Proceedings of the 2011 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2011; vol. 3).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Understanding the impact of fractionation and dynamic exclusion on proteomics
Zavala, C., Nixon, S., Southey, B. R., Wu, C., Romanova, E. V., Sweedler, J. V. & Rodriguez-Zas, S. L., 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 93-96 4 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Using microfluidics and mass spectrometry to study peptide release in neurons
Croushore, C. A., Lee, C. Y., Zhong, M. & Sweedler, J. V., Dec 1 2011, 15th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2011, MicroTAS 2011. p. 858-860 3 p. (15th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2011, MicroTAS 2011; vol. 2).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Editorial
2014 ACS national chemical historic landmark recognizing Kolthoff's influence on the field of analytical chemistry
Sweedler, J. V., Mar 4 2014, In: Analytical chemistry. 86, 5, 1 p.Research output: Contribution to journal › Editorial › peer-review
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2018: The 90th Volume of Analytical Chemistry and Still Growing
Sweedler, J. V., Dec 5 2017, In: Analytical Chemistry. 89, 23, p. 12617 1 p.Research output: Contribution to journal › Editorial › peer-review
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Advancing the Fields of Measurement Science with Partnerships and Awards
Sweedler, J. V., Apr 2 2019, In: Analytical chemistry. 91, 7, 1 p.Research output: Contribution to journal › Editorial › peer-review
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Analytical chemistry and our national science initiatives
Sweedler, J. V., Jul 5 2016, In: Analytical Chemistry. 88, 13, p. 6629 1 p.Research output: Contribution to journal › Editorial › peer-review
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Analytical chemistry is thriving in Thailand
Sweedler, J. V., May 5 2015, In: Analytical chemistry. 87, 9, 1 p.Research output: Contribution to journal › Editorial › peer-review