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• Label-free intracellular transport measured by spatial light interference microscopy

  Wang, Z., Millet, L., Chan, V., Ding, H., Gillette, M. U., Bashir, R. & Popescu, G., Feb 2011, In: Journal of biomedical optics. 16, 2, 026019.

  Research output: Contribution to journal › Article › peer-review

  • Light interference
  • organelles
  • Microscopic examination
  • Photobleaching
  • Labels

• Lipid bilayer coated Al₂O₃ nanopore sensors: Towards a hybrid biological solid-state nanopore

  Venkatesan, B. M., Polans, J., Comer, J., Sridhar, S., Wendell, D., Aksimentiev, A. & Bashir, R., Aug 2011, In: Biomedical microdevices. 13, 4, p. 671-682 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Lipid bilayers
  • Nanopores
  • Lipid Bilayers
  • Aluminum oxide
  • Sensors

• Localized Dielectric Loss Heating in Dielectrophoresis Devices

  Kwak, T. J., Hossen, I., Bashir, R., Chang, W. J. & Lee, C. H., Dec 1 2019, In: Scientific reports. 9, 1, 18977.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Heating
  • Temperature
  • Equipment and Supplies
  • Electrodes
  • Hot Temperature

• Localized heating on silicon field effect transistors for bio-chemical reactions

  Reddy, B., Elibol, O. H., Nair, P. R., Dorvel, B. R., Bergstrom, D., Alam, M. A. & Bashir, R., Dec 1 2010, 14th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2010, MicroTAS 2010. p. 1163-1165 3 p. (14th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2010, MicroTAS 2010; vol. 2).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Field effect transistors
  • Chemical reactions
  • Transistors
  • Silicon
  • Heating

• Long-Term Cryopreservation and Revival of Tissue-Engineered Skeletal Muscle

  Grant, L., Raman, R., Cvetkovic, C., Ferrall-Fairbanks, M. C., Pagan-Diaz, G. J., Hadley, P., Ko, E., Platt, M. O. & Bashir, R., Jul 1 2019, In: Tissue Engineering - Part A. 25, 13-14, p. 1023-1036 14 p.

  Research output: Contribution to journal › Article › peer-review

  • Cryopreservation
  • Muscle
  • Tissue
  • Skeletal Muscle
  • Freezing

• Magnetophoretic-based microfluidic device for DNA Concentration

  Shim, S., Shim, J., Taylor, W. R., Kosari, F., Vasmatzis, G., Ahlquist, D. A. & Bashir, R., Apr 1 2016, In: Biomedical microdevices. 18, 2, p. 1-8 8 p., 28.

  Research output: Contribution to journal › Article › peer-review

  • Lab-On-A-Chip Devices
  • Microfluidics
  • DNA
  • Nanofluidics
  • Nucleic acids

• Matrix Topography Regulates Synaptic Transmission at the Neuromuscular Junction

  Ko, E., Yu, S. J., Pagan-Diaz, G. J., Mahmassani, Z., Boppart, M. D., Im, S. G., Bashir, R. & Kong, H., Mar 20 2019, In: Advanced Science. 6, 6, 1801521.

  Research output: Contribution to journal › Article › peer-review

  • Neuromuscular Junction
  • Topography
  • Skeletal Muscle Fibers
  • Synaptic Transmission
  • topography

• Measurement of adherent cell mass and growth

  Park, K., Millet, L. J., Kim, N., Li, H., Jin, X., Popescu, G., Aluru, N. R., Hsia, K. J. & Bashir, R., Nov 30 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 48, p. 20691-20696 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Growth
  • Micro-Electrical-Mechanical Systems
  • Cell Cycle
  • Elastic Modulus
  • Tissue Engineering

• Mechanical Characterization and Shape Optimization of Fascicle-Like 3D Skeletal Muscle Tissues Contracted with Electrical and Optical Stimuli

  Neal, D., Sakar, M. S., Bashir, R., Chan, V. & Asada, H. H., Jun 1 2015, In: Tissue Engineering - Part A. 21, 11-12, p. 1848-1858 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Shape optimization
  • Muscle
  • Tissue
  • Skeletal Muscle
  • Muscles

• MEMS mass sensors with uniform sensitivity for monitoring cellular apoptosis

  Park, K., Millet, L., Kim, N., Li, H., Hsia, K. J., Aluru, N. R. & Bashir, R., Sep 1 2011, 2011 16th International Solid-State Sensors, Actuators and Microsystems Conference, TRANSDUCERS'11. p. 759-762 4 p. 5969307. (2011 16th International Solid-State Sensors, Actuators and Microsystems Conference, TRANSDUCERS'11).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Cell death
  • MEMS
  • Cell growth
  • Monitoring
  • Sensors

• Micro- and nanotechnology for HIV/AIDS diagnostics in resource-limited settings

  Damhorst, G. L., Watkins, N. N. & Bashir, R., 2013, In: IEEE Transactions on Biomedical Engineering. 60, 3, p. 715-726 12 p.

  Research output: Contribution to journal › Review article › peer-review

  • Viruses
  • Nanotechnology
  • T-cells
  • Immune system
  • Blood

• Microcantilevers track single-cell mass

  Bashir, R., Nov 8 2016, In: Nature Biotechnology. 34, 11, p. 1125-11260 10136 p.

  Research output: Contribution to journal › Short survey › peer-review

• Microfluidic CD4⁺ and CD8⁺ T lymphocyte counters for point-of-care HIV diagnostics using whole blood

  Watkins, N. N., Hassan, U., Damhorst, G., Ni, H., Vaid, A., Rodriguez, W. & Bashir, R., Dec 4 2013, In: Science Translational Medicine. 5, 214, 214ra170.

  Research output: Contribution to journal › Article › peer-review

  • Microfluidics
  • Point-of-Care Systems
  • HIV
  • T-Lymphocytes
  • Equipment and Supplies

• Microfluidic differential immunocapture biochip for specific leukocyte counting

  Hassan, U., Watkins, N. N., Reddy, B., Damhorst, G. & Bashir, R., Apr 1 2016, In: Nature Protocols. 11, 4, p. 714-726 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Biochips
  • Biosensors
  • Microfluidics
  • Leukocytes
  • Biosensing Techniques

• Microfluidics and Nanotechnology for Detection of Global Infectious Diseases

  Damhorst, G. L., Murtagh, M., Rodriguez, W. R. & Bashir, R., Feb 1 2015, In: Proceedings of the IEEE. 103, 2, p. 150-160 11 p., 7067024.

  Research output: Contribution to journal › Review article › peer-review

  • Nanotechnology
  • Microfluidics
  • Viruses
  • Pathogens
  • Industry

• Micromechanical properties of hydrogels measured with MEMS resonant sensors

  Corbin, E. A., Millet, L. J., Pikul, J. H., Johnson, C. L., Georgiadis, J. G., King, W. P. & Bashir, R., Apr 1 2013, In: Biomedical microdevices. 15, 2, p. 311-319 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Hydrogels
  • MEMS
  • poly(ethylene glycol)diacrylate
  • Electrohydrodynamics
  • Drug delivery

• Modeling and Analysis of Intercalant Effects on Circular DNA Conformation

  Krueger, E., Shim, J., Fathizadeh, A., Chang, A. N., Subei, B., Yocham, K. M., Davis, P. H., Graugnard, E., Khalili-Araghi, F., Bashir, R., Estrada, D. & Fologea, D., Sep 27 2016, In: ACS Nano. 10, 9, p. 8910-8917 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Circular DNA
  • Conformations
  • DNA
  • deoxyribonucleic acid
  • Nanopores

• Monolayer MoS ₂ Nanoribbon Transistors Fabricated by Scanning Probe Lithography

  Chen, S., Kim, S., Chen, W., Yuan, J., Bashir, R., Lou, J., Van Der Zande, A. M. & King, W. P., Mar 13 2019, In: Nano letters. 19, 3, p. 2092-2098 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanoribbons
  • Carbon Nanotubes
  • Monolayers
  • Lithography
  • Transistors

• Multi-cellular engineered living systems: Building a community around responsible research on emergence

  Sample, M., Boulicault, M., Allen, C., Bashir, R., Hyun, I., Levis, M., Lowenthal, C., Mertz, D., Montserrat, N., Palmer, M. J., Saha, K. & Zartman, J., Jul 10 2019, In: Biofabrication. 11, 4, 043001.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Seizing
  • Civil Rights
  • Organoids
  • Technology
  • Social Responsibility

• Nanopore-based assay for detection of methylation in double-stranded DNA fragments

  Shim, J., Kim, Y., Humphreys, G. I., Nardulli, A. M., Kosari, F., Vasmatzis, G., Taylor, W. R., Ahlquist, D. A., Myong, S. & Bashir, R., Jan 27 2015, In: ACS Nano. 9, 1, p. 290-300 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Methylation
  • methylation
  • Nanopores
  • Assays
  • DNA

• Nanopore sensors for nucleic acid analysis

  Venkatesan, B. M. & Bashir, R., Oct 2010, In: Nature Nanotechnology. 6, 10, p. 615-624 10 p.

  Research output: Contribution to journal › Review article › peer-review

  • Nanopores
  • Nucleic acids
  • nucleic acids
  • DNA
  • Nucleic Acids

• Nanotextured superhydrophobic electrodes enable detection of attomolar-scale DNA concentration within a droplet by non-faradaic impedance spectroscopy

  Ebrahimi, A., Dak, P., Salm, E., Dash, S., Garimella, S. V., Bashir, R. & Alam, M. A., Nov 7 2013, In: Lab on a chip. 13, 21, p. 4248-4256 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Dielectric Spectroscopy
  • Spectroscopy
  • DNA
  • Electric Impedance
  • Electrodes

• Neuromuscular actuation of biohybrid motile bots

  Aydin, O., Zhang, X., Nuethong, S., Pagan-Diaz, G. J., Bashir, R., Gazzola, M. & Saif, M. T. A., Oct 1 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 40, p. 19841-19847 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Muscles
  • Locomotion
  • Motor Neurons
  • Optogenetics
  • Myoblasts

• On a chip

  Watkins, N., Irimia, D., Toner, M. & Bashir, R., Nov 2011, In: IEEE Pulse. 2, 6, p. 19-27 9 p., 6088930.

  Research output: Contribution to journal › Article › peer-review

  • Emergency rooms
  • Ambulances
  • MEMS
  • Health

• On-chip electrical detection of parallel loop-mediated isothermal amplification with DG-BioFETs for the detection of foodborne bacterial pathogens

  Duarte-Guevara, C., Swaminathan, V. V., Reddy, B., Huang, J. C., Liu, Y. S. & Bashir, R., Jan 1 2016, In: RSC Advances. 6, 106, p. 103872-103887 16 p.

  Research output: Contribution to journal › Article › peer-review

  • Pathogens
  • Amplification
  • Assays
  • Gold
  • Nucleic acids

• On-chip magnetic separation and encapsulation of cells in droplets

  Chen, A., Byvank, T., Chang, W. J., Bharde, A., Vieira, G., Miller, B. L., Chalmers, J. J., Bashir, R. & Sooryakumar, R., Mar 21 2013, In: Lab on a chip. 13, 6, p. 1172-1181 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Magnetic separation
  • Cell Separation
  • Encapsulation
  • Sorting
  • Cells

• On-chip metal/polypyrrole quasi-reference electrodes for robust ISFET operation

  Duarte-Guevara, C., Swaminathan, V. V., Burgess, M., Reddy, B., Salm, E., Liu, Y. S., Rodriguez-Lopez, J. & Bashir, R., May 21 2015, In: Analyst. 140, 10, p. 3630-3641 12 p.

  Research output: Contribution to journal › Article › peer-review

  • polypyrrole
  • Ion sensitive field effect transistors
  • Polypyrroles
  • Ion-Selective Electrodes
  • Metals

• On-chip parallel detection of foodborne pathogens using loop-mediated isothermal amplification

  Duarte, C., Salm, E., Dorvel, B., Reddy, B. & Bashir, R., Oct 1 2013, In: Biomedical microdevices. 15, 5, p. 821-830 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Pathogens
  • Silicon
  • Amplification
  • Nucleic Acids
  • Nucleic acids

• On-chip PMA labeling of foodborne pathogenic bacteria for viable qPCR and qLAMP detection

  Duarte-Guevara, P., Duarte-Guevara, C., Ornob, A. & Bashir, R., Aug 1 2016, In: Microfluidics and Nanofluidics. 20, 8, 114.

  Research output: Contribution to journal › Article › peer-review

  • propidium monoazide
  • Bacteria
  • bacteria
  • marking
  • Labeling

• Optical measurement of cycle-dependent cell growth

  Mir, M., Wang, Z., Shen, Z., Bednarz, M., Bashir, R., Golding, I., Prasanth, S. G. & Popescu, G., Aug 9 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 32, p. 13124-13129 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Cell Cycle
  • Growth
  • Interference Microscopy
  • Cell Size
  • Microscopy

• Optogenetic skeletal muscle-powered adaptive biological machines

  Raman, R., Cvetkovic, C., Uzel, S. G. M., Platt, R. J., Sengupta, P., Kamm, R. D. & Bashir, R., Mar 29 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 13, p. 3497-3502 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Optogenetics
  • Bioengineering
  • Skeleton
  • Locomotion
  • Skeletal Muscle

• Optomechanical measurement of the stiffness of single adherent cells

  Park, K., Mehrnezhad, A., Corbin, E. A. & Bashir, R., Jul 14 2015, In: Lab on a chip. 15, 17, p. 3460-3464 5 p.

  Research output: Contribution to journal › Article › peer-review

  • Substrates
  • Stiffness
  • Mechanical properties
  • Phase shift
  • Lasers

• Pattern analysis and spatial distribution of neurons in culture

  Millet, L. J., Collens, M. B., Perry, G. L. W. & Bashir, R., Dec 1 2011, In: Integrative Biology. 3, 12, p. 1167-1178 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Spatial Analysis
  • Spatial distribution
  • Neurons
  • Neurology
  • Dendrites (metallography)

• Patterned Three-Dimensional Encapsulation of Embryonic Stem Cells using Dielectrophoresis and Stereolithography

  Bajaj, P., Marchwiany, D., Duarte, C. & Bashir, R., Mar 2013, In: Advanced Healthcare Materials. 2, 3, p. 450-458 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Stereolithography
  • Stem cells
  • Hydrogels
  • Electrophoresis
  • Encapsulation

• Patterning the differentiation of C2C12 skeletal myoblasts

  Bajaj, P., Reddy, B., Millet, L., Wei, C., Zorlutuna, P., Bao, G. & Bashir, R., Sep 1 2011, In: Integrative Biology. 3, 9, p. 897-909 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Skeletal Myoblasts
  • Fusion reactions
  • Substrates
  • Cells
  • Muscle

• Photopatterning of hydrogel scaffolds coupled to filter materials using stereolithography for perfused 3D culture of hepatocytes

  Neiman, J. A. S., Raman, R., Chan, V., Rhoads, M. G., Raredon, M. S. B., Velazquez, J. J., Dyer, R. L., Bashir, R., Hammond, P. T. & Griffith, L. G., Apr 1 2015, In: Biotechnology and bioengineering. 112, 4, p. 777-787 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Hepatocytes
  • Stereolithography
  • Hydrogels
  • Scaffolds
  • Polyethylene Glycol Dimethacrylate Hydrogel

• Piezoresistive microcantilevers from ultrananocrystalline diamond

  Privorotskaya, N. L., Zeng, H., Carlisle, J. A., Bashir, R. & King, W. P., Oct 1 2010, In: Journal of Microelectromechanical Systems. 19, 5, p. 1234-1242 9 p., 5567124.

  Research output: Contribution to journal › Article › peer-review

  • Diamonds
  • Temperature
  • Boron
  • Microsystems
  • Electric properties

• Piezoresistive microcantilevers from ultrananocrystalline diamond

  Privorotskaya, N. L., Zeng, H., Carlisle, J. A., Bashir, R. & King, W. P., Jan 1 2010, 2010 Solid-State Sensors, Actuators, and Microsystems Workshop. Monk, D. J. & Turner, K. L. (eds.). Transducer Research Foundation, p. 250-253 4 p. (Technical Digest - Solid-State Sensors, Actuators, and Microsystems Workshop).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Diamonds
  • Boron
  • Temperature
  • Microsystems
  • Electric properties

• Rapid thermal lysis of cells using silicon-diamond microcantilever heaters

  Privorotskaya, N., Liu, Y. S., Lee, J., Zeng, H., Carlisle, J. A., Radadia, A., Millet, L., Bashir, R. & King, W. P., 2010, In: Lab on a chip. 10, 9, p. 1135-1141 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Diamond
  • Silicon
  • Diamonds
  • Fibroblasts
  • Hot Temperature

• Separating beads and cells in multi-channel microfluidic devices using dielectrophoresis and laminar flow

  Millet, L. J., Park, K., Watkins, N. N., Jimmy Hsia, K. & Bashir, R., Feb 2011, In: Journal of Visualized Experiments. 48, e2545.

  Research output: Contribution to journal › Article › peer-review

  • Lab-On-A-Chip Devices
  • Electrophoresis
  • Microfluidics
  • Laminar flow
  • Fluidics

• Silicon field effect transistors as dual-use sensor-heater hybrids

  Reddy, B., Elibol, O. H., Nair, P. R., Dorvel, B. R., Butler, F., Ahsan, Z., Bergstrom, D. E., Alam, M. A. & Bashir, R., Feb 1 2011, In: Analytical Chemistry. 83, 3, p. 888-895 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Silicon
  • Field effect transistors
  • Transistors
  • Dielectric heating
  • Sensors

• Slowing DNA transport using graphene-DNA interactions

  Banerjee, S., Wilson, J., Shim, J., Shankla, M., Corbin, E. A., Aksimentiev, A. & Bashir, R., Feb 11 2015, In: Advanced Functional Materials. 25, 6, p. 936-946 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Graphite
  • Graphene
  • Nanopores
  • graphene
  • interactions

• Smartphone-Imaged HIV-1 Reverse-Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) on a Chip from Whole Blood

  Damhorst, G. L., Duarte-Guevara, C., Chen, W., Ghonge, T., Cunningham, B. T. & Bashir, R., Sep 1 2015, In: Engineering. 1, 3, p. 324-335 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Viruses
  • Transcription
  • Amplification
  • Smartphones
  • Blood

• Smartphone-imaged microfluidic biochip for measuring CD64 expression from whole blood

  Ghonge, T., Ceylan Koydemir, H., Valera, E., Berger, J., Garcia, C., Nawar, N., Tiao, J., Damhorst, G. L., Ganguli, A., Hassan, U., Ozcan, A. & Bashir, R., Jul 7 2019, In: Analyst. 144, 13, p. 3925-3935 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Flow cytometry
  • Biochips
  • Smartphone
  • Microfluidics
  • flow cytometry

• Stereolithographic 3D bioprinting for biomedical applications

  Raman, R. & Bashir, R., Aug 7 2015, Essentials of 3D Biofabrication and Translation. Elsevier Inc., p. 89-121 33 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Bioprinting
  • Stereolithography
  • Medical applications
  • Regenerative Medicine
  • Fabrication

• Stereolithography-based hydrogel microenvironments to examine cellular interactions

  Zorlutuna, P., Jeong, J. H., Kong, H. & Bashir, R., Oct 7 2011, In: Advanced Functional Materials. 21, 19, p. 3642-3651 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Stereolithography
  • Hydrogels
  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Neurons
  • Choline

• Stiffness of the substrate influences the phenotype of embryonic chicken cardiac myocytes

  Bajaj, P., Tang, X., Saif, T. A. & Bashir, R., Dec 15 2010, In: Journal of Biomedical Materials Research - Part A. 95, 4, p. 1261-1269 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Tissue culture
  • Polyacrylates
  • Substrates
  • Stiffness
  • Adhesion

• Surface functionalization of thin-film diamond for highly stable and selective biological interfaces

  Stavis, C., Clare, T. L., Butler, J. E., Radadia, A. D., Carr, R., Zeng, H., King, W. P., Carlisle, J. A., Aksimentiev, A., Bashir, R. & Hamers, R. J., Jan 18 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 3, p. 983-988 6 p.

  Research output: Contribution to journal › Review article › peer-review

  • Diamond
  • Photoelectron Spectroscopy
  • Carbon
  • Ethylene Glycol
  • Alkenes

• Surface immobilizable chelator for label-free electrical detection of pyrophosphate

  Liu, D. J., Credo, G. M., Su, X., Wu, K., Lim, H. C., Elibol, O. H., Bashir, R. & Varma, M., Aug 7 2011, In: Chemical Communications. 47, 29, p. 8310-8312 3 p.

  Research output: Contribution to journal › Article › peer-review

  • diphosphoric acid
  • Chelating Agents
  • Labels
  • Silicon
  • Field effect transistors

• Tailoring the dependency between rigidity and water uptake of a microfabricated hydrogel with the conformational rigidity of a polymer cross-linker

  Schmidt, J. J., Jeong, J. H., Chan, V., Cha, C., Baek, K., Lai, M. H., Bashir, R. & Kong, H., May 13 2013, In: Biomacromolecules. 14, 5, p. 1361-1369 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Hydrogels
  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Rigidity
  • Polymers
  • Methacrylates