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  • Rashid Bashir
Article

Magnetophoretic-based microfluidic device for DNA Concentration

Shim, S., Shim, J., Taylor, W. R., Kosari, F., Vasmatzis, G., Ahlquist, D. A. & Bashir, R., Apr 1 2016, In : Biomedical microdevices. 18, 2, p. 1-8 8 p., 28.

Research output: Contribution to journalArticle

Measurement of adherent cell mass and growth

Park, K., Millet, L. J., Kim, N., Li, H., Jin, X., Popescu, G., Aluru, N. R., Hsia, K. J. & Bashir, R., Nov 30 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 48, p. 20691-20696 6 p.

Research output: Contribution to journalArticle

Mechanical Characterization and Shape Optimization of Fascicle-Like 3D Skeletal Muscle Tissues Contracted with Electrical and Optical Stimuli

Neal, D., Sakar, M. S., Bashir, R., Chan, V. & Asada, H. H., Jun 1 2015, In : Tissue Engineering - Part A. 21, 11-12, p. 1848-1858 11 p.

Research output: Contribution to journalArticle

Microfluidic CD4+ and CD8+ T lymphocyte counters for point-of-care HIV diagnostics using whole blood

Watkins, N. N., Hassan, U., Damhorst, G., Ni, H., Vaid, A., Rodriguez, W. & Bashir, R., Dec 4 2013, In : Science Translational Medicine. 5, 214, 214ra170.

Research output: Contribution to journalArticle

Microfluidic differential immunocapture biochip for specific leukocyte counting

Hassan, U., Watkins, N. N., Reddy, B., Damhorst, G. & Bashir, R., Apr 1 2016, In : Nature Protocols. 11, 4, p. 714-726 13 p.

Research output: Contribution to journalArticle

Micromechanical properties of hydrogels measured with MEMS resonant sensors

Corbin, E. A., Millet, L. J., Pikul, J. H., Johnson, C. L., Georgiadis, J. G., King, W. P. & Bashir, R., Apr 1 2013, In : Biomedical microdevices. 15, 2, p. 311-319 9 p.

Research output: Contribution to journalArticle

Mobile Platform for Multiplexed Detection and Differentiation of Disease-Specific Nucleic Acid Sequences, Using Microfluidic Loop-Mediated Isothermal Amplification and Smartphone Detection

Chen, W., Yu, H., Sun, F., Ornob, A., Brisbin, R., Ganguli, A., Vemuri, V., Strzebonski, P., Cui, G., Allen, K. J., Desai, S. A., Lin, W., Nash, D. M., Hirschberg, D. L., Brooks, I., Bashir, R. & Cunningham, B. T., Nov 7 2017, In : Analytical chemistry. 89, 21, p. 11219-11226 8 p.

Research output: Contribution to journalArticle

Modeling and Analysis of Intercalant Effects on Circular DNA Conformation

Krueger, E., Shim, J., Fathizadeh, A., Chang, A. N., Subei, B., Yocham, K. M., Davis, P. H., Graugnard, E., Khalili-Araghi, F., Bashir, R., Estrada, D. & Fologea, D., Sep 27 2016, In : ACS Nano. 10, 9, p. 8910-8917 8 p.

Research output: Contribution to journalArticle

Multivariate computational analysis of biosensor's data for improved CD64 quantification for sepsis diagnosis

Hassan, U., Zhu, R. & Bashir, R., Apr 21 2018, In : Lab on a chip. 18, 8, p. 1231-1240 10 p.

Research output: Contribution to journalArticle

Nanopore-based assay for detection of methylation in double-stranded DNA fragments

Shim, J., Kim, Y., Humphreys, G. I., Nardulli, A. M., Kosari, F., Vasmatzis, G., Taylor, W. R., Ahlquist, D. A., Myong, S. & Bashir, R., Jan 27 2015, In : ACS Nano. 9, 1, p. 290-300 11 p.

Research output: Contribution to journalArticle

Nanotextured superhydrophobic electrodes enable detection of attomolar-scale DNA concentration within a droplet by non-faradaic impedance spectroscopy

Ebrahimi, A., Dak, P., Salm, E., Dash, S., Garimella, S. V., Bashir, R. & Alam, M. A., Nov 7 2013, In : Lab on a chip. 13, 21, p. 4248-4256 9 p.

Research output: Contribution to journalArticle

On a chip

Watkins, N., Irimia, D., Toner, M. & Bashir, R., Nov 1 2011, In : IEEE Pulse. 2, 6, p. 19-27 9 p., 6088930.

Research output: Contribution to journalArticle

On-chip electrical detection of parallel loop-mediated isothermal amplification with DG-BioFETs for the detection of foodborne bacterial pathogens

Duarte-Guevara, C., Swaminathan, V. V., Reddy, B., Huang, J. C., Liu, Y. S. & Bashir, R., Jan 1 2016, In : RSC Advances. 6, 106, p. 103872-103887 16 p.

Research output: Contribution to journalArticle

On-chip magnetic separation and encapsulation of cells in droplets

Chen, A., Byvank, T., Chang, W. J., Bharde, A., Vieira, G., Miller, B. L., Chalmers, J. J., Bashir, R. & Sooryakumar, R., Mar 21 2013, In : Lab on a chip. 13, 6, p. 1172-1181 10 p.

Research output: Contribution to journalArticle

On-chip metal/polypyrrole quasi-reference electrodes for robust ISFET operation

Duarte-Guevara, C., Swaminathan, V. V., Burgess, M., Reddy, B., Salm, E., Liu, Y. S., Rodriguez-Lopez, J. & Bashir, R., May 21 2015, In : Analyst. 140, 10, p. 3630-3641 12 p.

Research output: Contribution to journalArticle

On-chip parallel detection of foodborne pathogens using loop-mediated isothermal amplification

Duarte, C., Salm, E., Dorvel, B., Reddy, B. & Bashir, R., Oct 1 2013, In : Biomedical microdevices. 15, 5, p. 821-830 10 p.

Research output: Contribution to journalArticle

On-chip PMA labeling of foodborne pathogenic bacteria for viable qPCR and qLAMP detection

Duarte-Guevara, P., Duarte-Guevara, C., Ornob, A. & Bashir, R., Aug 1 2016, In : Microfluidics and Nanofluidics. 20, 8, 114.

Research output: Contribution to journalArticle

Optical measurement of cycle-dependent cell growth

Mir, M., Wang, Z., Shen, Z., Bednarz, M., Bashir, R., Golding, I., Prasanth, S. G. & Popescu, G., Aug 9 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 32, p. 13124-13129 6 p.

Research output: Contribution to journalArticle

Optogenetic skeletal muscle-powered adaptive biological machines

Raman, R., Cvetkovic, C., Uzel, S. G. M., Platt, R. J., Sengupta, P., Kamm, R. D. & Bashir, R., Mar 29 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 13, p. 3497-3502 6 p.

Research output: Contribution to journalArticle

Optomechanical measurement of the stiffness of single adherent cells

Park, K., Mehrnezhad, A., Corbin, E. A. & Bashir, R., Jul 14 2015, In : Lab on a chip. 15, 17, p. 3460-3464 5 p.

Research output: Contribution to journalArticle

Pattern analysis and spatial distribution of neurons in culture

Millet, L. J., Collens, M. B., Perry, G. L. W. & Bashir, R., Dec 1 2011, In : Integrative Biology. 3, 12, p. 1167-1178 12 p.

Research output: Contribution to journalArticle

Patterned Three-Dimensional Encapsulation of Embryonic Stem Cells using Dielectrophoresis and Stereolithography

Bajaj, P., Marchwiany, D., Duarte, C. & Bashir, R., Mar 2013, In : Advanced Healthcare Materials. 2, 3, p. 450-458 9 p.

Research output: Contribution to journalArticle

Patterning the differentiation of C2C12 skeletal myoblasts

Bajaj, P., Reddy, B., Millet, L., Wei, C., Zorlutuna, P., Bao, G. & Bashir, R., Sep 1 2011, In : Integrative Biology. 3, 9, p. 897-909 13 p.

Research output: Contribution to journalArticle

Photopatterning of hydrogel scaffolds coupled to filter materials using stereolithography for perfused 3D culture of hepatocytes

Neiman, J. A. S., Raman, R., Chan, V., Rhoads, M. G., Raredon, M. S. B., Velazquez, J. J., Dyer, R. L., Bashir, R., Hammond, P. T. & Griffith, L. G., Apr 1 2015, In : Biotechnology and bioengineering. 112, 4, p. 777-787 11 p.

Research output: Contribution to journalArticle

Piezoresistive microcantilevers from ultrananocrystalline diamond

Privorotskaya, N. L., Zeng, H., Carlisle, J. A., Bashir, R. & King, W. P., Oct 1 2010, In : Journal of Microelectromechanical Systems. 19, 5, p. 1234-1242 9 p., 5567124.

Research output: Contribution to journalArticle

Pixelated spatial gene expression analysis from tissue

Ganguli, A., Ornob, A., Spegazzini, N., Liu, Y., Damhorst, G., Ghonge, T., Thornton, B., Konopka, C. J., Dobrucki, W., Clare, S. E., Bhargava, R., Smith, A. M., Kosari, F. & Bashir, R., Dec 1 2018, In : Nature communications. 9, 1, 202.

Research output: Contribution to journalArticle

Rapid thermal lysis of cells using silicon-diamond microcantilever heaters

Privorotskaya, N., Liu, Y. S., Lee, J., Zeng, H., Carlisle, J. A., Radadia, A., Millet, L., Bashir, R. & King, W. P., 2010, In : Lab on a chip. 10, 9, p. 1135-1141 7 p.

Research output: Contribution to journalArticle

Robust label-free microRNA detection using one million ISFET array

Ganguli, A., Watanabe, Y., Hwang, M. T., Huang, J. C. & Bashir, R., Jun 2 2018, In : Biomedical microdevices. 20, 2, 1 p.

Research output: Contribution to journalArticle

Separating beads and cells in multi-channel microfluidic devices using dielectrophoresis and laminar flow

Millet, L. J., Park, K., Watkins, N. N., Jimmy Hsia, K. & Bashir, R., Feb 2011, In : Journal of Visualized Experiments. 48, e2545.

Research output: Contribution to journalArticle

Silicon field effect transistors as dual-use sensor-heater hybrids

Reddy, B., Elibol, O. H., Nair, P. R., Dorvel, B. R., Butler, F., Ahsan, Z., Bergstrom, D. E., Alam, M. A. & Bashir, R., Feb 1 2011, In : Analytical chemistry. 83, 3, p. 888-895 8 p.

Research output: Contribution to journalArticle

Simulation and Fabrication of Stronger, Larger, and Faster Walking Biohybrid Machines

Pagan-Diaz, G. J., Zhang, X., Grant, L., Kim, Y., Aydin, O., Cvetkovic, C., Ko, E., Solomon, E., Hollis, J., Kong, H., Saif, T., Gazzola, M. & Bashir, R., Jun 6 2018, In : Advanced Functional Materials. 28, 23, 1801145.

Research output: Contribution to journalArticle

Slowing DNA transport using graphene-DNA interactions

Banerjee, S., Wilson, J., Shim, J., Shankla, M., Corbin, E. A., Aksimentiev, A. & Bashir, R., Feb 11 2015, In : Advanced Functional Materials. 25, 6, p. 936-946 11 p.

Research output: Contribution to journalArticle

Smartphone-Imaged HIV-1 Reverse-Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) on a Chip from Whole Blood

Damhorst, G. L., Duarte-Guevara, C., Chen, W., Ghonge, T., Cunningham, B. T. & Bashir, R., Sep 1 2015, In : Engineering. 1, 3, p. 324-335 12 p.

Research output: Contribution to journalArticle

Stereolithography-based hydrogel microenvironments to examine cellular interactions

Zorlutuna, P., Jeong, J. H., Kong, H. & Bashir, R., Oct 7 2011, In : Advanced Functional Materials. 21, 19, p. 3642-3651 10 p.

Research output: Contribution to journalArticle

Stiffness of the substrate influences the phenotype of embryonic chicken cardiac myocytes

Bajaj, P., Tang, X., Saif, T. A. & Bashir, R., Dec 15 2010, In : Journal of Biomedical Materials Research - Part A. 95, 4, p. 1261-1269 9 p.

Research output: Contribution to journalArticle

Surface immobilizable chelator for label-free electrical detection of pyrophosphate

Liu, D. J., Credo, G. M., Su, X., Wu, K., Lim, H. C., Elibol, O. H., Bashir, R. & Varma, M., Aug 7 2011, In : Chemical Communications. 47, 29, p. 8310-8312 3 p.

Research output: Contribution to journalArticle

Tailoring the dependency between rigidity and water uptake of a microfabricated hydrogel with the conformational rigidity of a polymer cross-linker

Schmidt, J. J., Jeong, J. H., Chan, V., Cha, C., Baek, K., Lai, M. H., Bashir, R. & Kong, H., May 13 2013, In : Biomacromolecules. 14, 5, p. 1361-1369 9 p.

Research output: Contribution to journalArticle

Three-dimensional photopatterning of hydrogels using stereolithography for long-term cell encapsulation

Chan, V., Zorlutuna, P., Jeong, J. H., Kong, H. & Bashir, R., Aug 21 2010, In : Lab on a chip. 10, 16, p. 2062-2070 9 p.

Research output: Contribution to journalArticle

Tip-based nanofabrication of arbitrary shapes of graphene nanoribbons for device applications

Hu, H., Banerjee, S., Estrada, D., Bashir, R. & King, W. P., 2015, In : RSC Advances. 5, 46, p. 37006-37012 7 p.

Research output: Contribution to journalArticle

Ultra-localized single cell electroporation using silicon nanowires

Jokilaakso, N., Salm, E., Chen, A., Millet, L., Guevara, C. D., Dorvel, B., Reddy, B., Karlstrom, A. E., Chen, Y., Ji, H., Sooryakumar, R. & Bashir, R., Feb 7 2013, In : Lab on a chip. 13, 3, p. 336-339 4 p.

Research output: Contribution to journalArticle

Ultralocalized thermal reactions in subnanoliter droplets-in-air

Salm, E., Guevara, C. D., Dak, P., Dorvel, B. R., Reddy, B., Alam, M. A. & Bashir, R., Feb 26 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 9, p. 3310-3315 6 p.

Research output: Contribution to journalArticle

Vapor-phase deposition of monofunctional alkoxysilanes for sub-nanometer-level biointerfacing on silicon oxide surfaces

Dorvel, B., Block, I., Reddy, B., Mathias, P., Clare, S. E., Cunningham, B., Bergstrom, D. E. & Bashir, R., Jan 8 2010, In : Advanced Functional Materials. 20, 1, p. 87-95 9 p.

Research output: Contribution to journalArticle

Chapter

Impedance microbiology and microbial screening strategy for detecting pathogens in food

Flint, S., Naila, A. & Bashir, R., Jan 1 2015, High Throughput Screening for Food Safety Assessment: Biosensor Technologies, Hyperspectral Imaging and Practical Applications. Elsevier Inc., p. 285-300 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Integrated cantilever-based biosensors for the detection of chemical and biological entities

Corbin, E. A., YekrangSafakar, A., Adeniba, O., Gupta, A., Park, K. & Bashir, R., Jan 1 2017, Nanotechnology in Biology and Medicine: Methods, Devices, and Applications, Second Edition. CRC Press, p. 469-529 61 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Stereolithographic 3D bioprinting for biomedical applications

Raman, R. & Bashir, R., Aug 7 2015, Essentials of 3D Biofabrication and Translation. Elsevier Inc., p. 89-121 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Conference article

A semiconductor bio-electrical platform with addressable thermal control circuits for accelerated bioassay development

Chen, T. T., Wen, C. H., Huang, J. C., Peng, Y. C., Liu, S., Su, S. H., Cheng, L. H., Lai, H. C., Liao, T. C., Lai, F. L., Cheng, C. W., Yang, C. K., Yang, J. H., Hsieh, Y. J., Salm, E., Reddy, B., Tsui, F., Liu, Y. S., Bashir, R. & Chen, M., Feb 20 2015, In : Technical Digest - International Electron Devices Meeting, IEDM. 2015-February, February, p. 15.4.1-15.4.4 7047058.

Research output: Contribution to journalConference article

Conference contribution

3D fabrication of biological machines

Chan, V., Kong, H. J. & Bashir, R., Oct 31 2013, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2013. p. 314-317 4 p. 6609500. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Beating the Nernst limit of 59mV/pH with double-gated nano-scale field-effect transistors and its applications to ultra-sensitive DNA biosensors

Go, J., Nair, P. R., Reddy, B., Dorvel, B., Bashir, R. & Alam, M. A., Dec 1 2010, 2010 IEEE International Electron Devices Meeting, IEDM 2010. p. 8.7.1-8.7.4 5703325. (Technical Digest - International Electron Devices Meeting, IEDM).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biomedical micro and nanotechnology: From lab-on-chip to building systems with cells

Hassan, U., Bajaj, P., Damhorst, G. & Bashir, R., Dec 1 2013, 2013 Transducers and Eurosensors XXVII: The 17th International Conference on Solid-State Sensors, Actuators and Microsystems, TRANSDUCERS and EUROSENSORS 2013. p. 2539-2543 5 p. 6627323. (2013 Transducers and Eurosensors XXVII: The 17th International Conference on Solid-State Sensors, Actuators and Microsystems, TRANSDUCERS and EUROSENSORS 2013).

Research output: Chapter in Book/Report/Conference proceedingConference contribution