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  • Rashid Bashir
2012

Label-free electrical detection of pyrophosphate generated from DNA polymerase reactions on field-effect devices

Credo, G. M., Su, X., Wu, K., Elibol, O. H., Liu, D. J., Reddy, B., Tsai, T. W., Dorvel, B. R., Daniels, J. S., Bashir, R. & Varma, M., Mar 21 2012, In : Analyst. 137, 6, p. 1351-1362 12 p.

Research output: Contribution to journalArticle

"Living" microvascular stamp for patterning of functional neovessels; Orchestrated control of matrix property and geometry

Jeong, J. H., Chan, V., Cha, C., Zorlutuna, P., Dyck, C., Hsia, K. J., Bashir, R. & Kong, H., Jan 3 2012, In : Advanced Materials. 24, 1, p. 58-63 6 p.

Research output: Contribution to journalArticle

Mechanical communication between cardiac cell leads to synchrony in beating

Tang, X., Bajaj, P., Bashir, R. & Saif, T., Dec 1 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 333-334 2 p. (ASME 2012 Summer Bioengineering Conference, SBC 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Microfluidic multifunctional probe array dielectrophoretic force spectroscopy with wide loading rates

Park, I. S., Eom, K., Son, J., Chang, W. J., Park, K., Kwon, T., Yoon, D. S., Bashir, R. & Lee, S. W., Oct 23 2012, In : ACS Nano. 6, 10, p. 8665-8673 9 p.

Research output: Contribution to journalArticle

Multi-material bio-fabrication of hydrogel cantilevers and actuators with stereolithography

Chan, V., Jeong, J. H., Bajaj, P., Collens, M., Saif, T., Kong, H. & Bashir, R., Jan 7 2012, In : Lab on a chip. 12, 1, p. 88-98 11 p.

Research output: Contribution to journalArticle

Nanopore sensors for DNA analysis

Solovyeva, V., Venkatesan, B. M., Shim, J., Banerjee, S., Rivera, J. & Bashir, R., Jul 23 2012, Micro- and Nanotechnology Sensors, Systems, and Applications IV. 83730O. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8373).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Resonant MEMS mass sensors for measurement of microdroplet evaporation

Park, K., Kim, N., Morisette, D. T., Aluru, N. R. & Bashir, R., Apr 5 2012, In : Journal of Microelectromechanical Systems. 21, 3, p. 702-711 10 p., 6176181.

Research output: Contribution to journalArticle

Silicon nanowires with high-k hafnium oxide dielectrics for sensitive detection of small nucleic acid oligomers

Dorvel, B. R., Reddy, B., Go, J., Duarte Guevara, C., Salm, E., Alam, M. A. & Bashir, R., Jul 24 2012, In : ACS Nano. 6, 7, p. 6150-6164 15 p.

Research output: Contribution to journalArticle

Stacked graphene-Al 2O 3 nanopore sensors for sensitive detection of DNA and DNA-protein complexes

Venkatesan, B. M., Estrada, D., Banerjee, S., Jin, X., Dorgan, V. E., Bae, M. H., Aluru, N. R., Pop, E. & Bashir, R., Jan 24 2012, In : ACS Nano. 6, 1, p. 441-450 10 p.

Research output: Contribution to journalArticle

2013

3D fabrication of biological machines

Chan, V., Kong, H. J. & Bashir, R., Oct 31 2013, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2013. p. 314-317 4 p. 6609500. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A liposome-based ion release impedance sensor for biological detection

Damhorst, G. L., Smith, C. E., Salm, E. M., Sobieraj, M. M., Ni, H., Kong, H. & Bashir, R., Oct 2013, In : Biomedical microdevices. 15, 5, p. 895-905 11 p.

Research output: Contribution to journalArticle

Biomedical micro and nanotechnology: From lab-on-chip to building with cells

Hassan, U., Bajaj, P., Salm, E., Damhorst, G. & Bashir, R., Dec 16 2013, 71st Device Research Conference, DRC 2013 - Conference Digest. 1 p. 6633767. (Device Research Conference - Conference Digest, DRC).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biomedical micro and nanotechnology: From lab-on-chip to building systems with cells

Hassan, U., Bajaj, P., Damhorst, G. & Bashir, R., Dec 1 2013, 2013 Transducers and Eurosensors XXVII: The 17th International Conference on Solid-State Sensors, Actuators and Microsystems, TRANSDUCERS and EUROSENSORS 2013. p. 2539-2543 5 p. 6627323. (2013 Transducers and Eurosensors XXVII: The 17th International Conference on Solid-State Sensors, Actuators and Microsystems, TRANSDUCERS and EUROSENSORS 2013).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cardiac myocytes' dynamic contractile behavior differs depending on heart segment

De Souza, E. J., Ahmed, W., Chan, V., Bashir, R. & Saif, T., Feb 2013, In : Biotechnology and bioengineering. 110, 2, p. 628-636 9 p.

Research output: Contribution to journalArticle

Cardiomyocyte Imaging Using Real-Time Spatial Light Interference Microscopy (SLIM)

Bhaduri, B., Wickland, D., Wang, R., Chan, V., Bashir, R. & Popescu, G., Feb 15 2013, In : PloS one. 8, 2, e56930.

Research output: Contribution to journalArticle

Detection and quantification of methylation in DNA using solid-state nanopores

Shim, J., Humphreys, G. I., Venkatesan, B. M., Munz, J. M., Zou, X., Sathe, C., Schulten, K., Kosari, F., Nardulli, A. M., Vasmatzis, G. & Bashir, R., 2013, In : Scientific reports. 3, 1389.

Research output: Contribution to journalArticle

Direct DNA sequencing using nanopore sensors

Bashir, R., Apr 1 2013, In : Genetic Engineering and Biotechnology News. 33, 7, p. 34-35+45

Research output: Contribution to journalArticle

Effect of biointerfacing linker chemistries on the sensitivity of silicon nanowires for protein detection

Dorvel, B., Reddy, B. & Bashir, R., Oct 15 2013, In : Analytical chemistry. 85, 20, p. 9493-9500 8 p.

Research output: Contribution to journalArticle

Electrochemistry at the edge of a single graphene layer in a nanopore

Banerjee, S., Shim, J., Rivera, J., Jin, X., Estrada, D., Solovyeva, V., You, X., Pak, J., Pop, E., Aluru, N. & Bashir, R., Jan 22 2013, In : ACS Nano. 7, 1, p. 834-843 10 p.

Research output: Contribution to journalArticle

Electron beam induced local crystallization of HfO2 nanopores for biosensing applications

Shim, J., Rivera, J. A. & Bashir, R., Nov 21 2013, In : Nanoscale. 5, 22, p. 10887-10893 7 p.

Research output: Contribution to journalArticle

Enabling microscale and nanoscale approaches for bioengineered cardiac tissue

Chan, V., Raman, R., Cvetkovic, C. & Bashir, R., Mar 26 2013, In : ACS Nano. 7, 3, p. 1830-1837 8 p.

Research output: Contribution to journalArticle

In situ self-folding assembly of a multi-walled hydrogel tube for uniaxial sustained molecular release

Baek, K., Jeong, J. H., Shkumatov, A., Bashir, R. & Kong, H., Oct 18 2013, In : Advanced Materials. 25, 39, p. 5568-5573 6 p.

Research output: Contribution to journalArticle

Micro- and nanotechnology for HIV/AIDS diagnostics in resource-limited settings

Damhorst, G. L., Watkins, N. N. & Bashir, R., 2013, In : IEEE Transactions on Biomedical Engineering. 60, 3, p. 715-726 12 p.

Research output: Contribution to journalReview article

Microfluidic CD4+ and CD8+ T lymphocyte counters for point-of-care HIV diagnostics using whole blood

Watkins, N. N., Hassan, U., Damhorst, G., Ni, H., Vaid, A., Rodriguez, W. & Bashir, R., Dec 4 2013, In : Science Translational Medicine. 5, 214, 214ra170.

Research output: Contribution to journalArticle

Micromechanical properties of hydrogels measured with MEMS resonant sensors

Corbin, E. A., Millet, L. J., Pikul, J. H., Johnson, C. L., Georgiadis, J. G., King, W. P. & Bashir, R., Apr 1 2013, In : Biomedical microdevices. 15, 2, p. 311-319 9 p.

Research output: Contribution to journalArticle

Nanotextured superhydrophobic electrodes enable detection of attomolar-scale DNA concentration within a droplet by non-faradaic impedance spectroscopy

Ebrahimi, A., Dak, P., Salm, E., Dash, S., Garimella, S. V., Bashir, R. & Alam, M. A., Nov 7 2013, In : Lab on a chip. 13, 21, p. 4248-4256 9 p.

Research output: Contribution to journalArticle

On-chip magnetic separation and encapsulation of cells in droplets

Chen, A., Byvank, T., Chang, W. J., Bharde, A., Vieira, G., Miller, B. L., Chalmers, J. J., Bashir, R. & Sooryakumar, R., Mar 21 2013, In : Lab on a chip. 13, 6, p. 1172-1181 10 p.

Research output: Contribution to journalArticle

On-chip parallel detection of foodborne pathogens using loop-mediated isothermal amplification

Duarte, C., Salm, E., Dorvel, B., Reddy, B. & Bashir, R., Oct 1 2013, In : Biomedical microdevices. 15, 5, p. 821-830 10 p.

Research output: Contribution to journalArticle

Patterned Three-Dimensional Encapsulation of Embryonic Stem Cells using Dielectrophoresis and Stereolithography

Bajaj, P., Marchwiany, D., Duarte, C. & Bashir, R., Mar 2013, In : Advanced Healthcare Materials. 2, 3, p. 450-458 9 p.

Research output: Contribution to journalArticle

Tailoring the dependency between rigidity and water uptake of a microfabricated hydrogel with the conformational rigidity of a polymer cross-linker

Schmidt, J. J., Jeong, J. H., Chan, V., Cha, C., Baek, K., Lai, M. H., Bashir, R. & Kong, H., May 13 2013, In : Biomacromolecules. 14, 5, p. 1361-1369 9 p.

Research output: Contribution to journalArticle

Ultra-localized single cell electroporation using silicon nanowires

Jokilaakso, N., Salm, E., Chen, A., Millet, L., Guevara, C. D., Dorvel, B., Reddy, B., Karlstrom, A. E., Chen, Y., Ji, H., Sooryakumar, R. & Bashir, R., Feb 7 2013, In : Lab on a chip. 13, 3, p. 336-339 4 p.

Research output: Contribution to journalArticle

Ultralocalized thermal reactions in subnanoliter droplets-in-air

Salm, E., Guevara, C. D., Dak, P., Dorvel, B. R., Reddy, B., Alam, M. A. & Bashir, R., Feb 26 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 9, p. 3310-3315 6 p.

Research output: Contribution to journalArticle

2015

A semiconductor bio-electrical platform with addressable thermal control circuits for accelerated bioassay development

Chen, T. T., Wen, C. H., Huang, J. C., Peng, Y. C., Liu, S., Su, S. H., Cheng, L. H., Lai, H. C., Liao, T. C., Lai, F. L., Cheng, C. W., Yang, C. K., Yang, J. H., Hsieh, Y. J., Salm, E., Reddy, B., Tsui, F., Liu, Y. S., Bashir, R. & Chen, M., Feb 20 2015, In : Technical Digest - International Electron Devices Meeting, IEDM. 2015-February, February, p. 15.4.1-15.4.4 7047058.

Research output: Contribution to journalConference article

Biodegradable thin metal foils and spin-on glass materials for transient electronics

Kang, S. K., Hwang, S. W., Yu, S., Seo, J. H., Corbin, E. A., Shin, J., Wie, D. S., Bashir, R., Ma, Z. & Rogers, J. A., Mar 25 2015, In : Advanced Functional Materials. 25, 12, p. 1789-1797 9 p.

Research output: Contribution to journalArticle

Biophysical properties of human breast cancer cells measured using silicon MEMS resonators and atomic force microscopy

Corbin, E. A., Kong, F., Lim, C. T., King, W. P. & Bashir, R., Feb 7 2015, In : Lab on a chip. 15, 3, p. 839-847 9 p.

Research output: Contribution to journalArticle

Electronic desalting for controlling the ionic environment in droplet-based biosensing platforms

Swaminathan, V. V., Dak, P., Reddy, B., Salm, E., Duarte-Guevara, C., Zhong, Y., Fischer, A., Liu, Y. S., Alam, M. A. & Bashir, R., Feb 2 2015, In : Applied Physics Letters. 106, 5, 053105.

Research output: Contribution to journalArticle

Engineering as a new frontier for translational medicine

Chien, S., Bashir, R., Nerem, R. M. & Pettigrew, R., Apr 1 2015, In : Science Translational Medicine. 7, 281, 281fs13.

Research output: Contribution to journalArticle

Enhanced sub-micron colloidal particle separation with interdigitated microelectrode arrays using mixed AC/DC dielectrophoretic scheme

Swaminathan, V. V., Shannon, M. A. & Bashir, R., Jan 1 2015, In : Biomedical microdevices. 17, 2

Research output: Contribution to journalArticle

Fabrication and characterization of optogenetic, multi-strip cardiac muscles

Chan, V., Neal, D. M., Uzel, S. G. M., Kim, H., Bashir, R. & Asada, H. H., May 21 2015, In : Lab on a chip. 15, 10, p. 2258-2268 11 p.

Research output: Contribution to journalArticle

Glacier moraine formation-mimicking colloidal particle assembly in microchanneled, bioactive hydrogel for guided vascular network construction

Lee, M. K., Rich, M. H., Shkumatov, A., Jeong, J. H., Boppart, M. D., Bashir, R., Gillette, M. U., Lee, J. & Kong, H., Jan 1 2015, In : Advanced Healthcare Materials. 4, 2, p. 195-201 7 p.

Research output: Contribution to journalArticle

Graphene-Based Platform for Infrared Near-Field Nanospectroscopy of Water and Biological Materials in an Aqueous Environment

Khatib, O., Wood, J. D., McLeod, A. S., Goldflam, M. D., Wagner, M., Damhorst, G. L., Koepke, J. C., Doidge, G. P., Rangarajan, A., Bashir, R., Pop, E., Lyding, J. W., Thiemens, M. H., Keilmann, F. & Basov, D. N., Aug 25 2015, In : ACS Nano. 9, 8, p. 7968-7975 8 p.

Research output: Contribution to journalArticle

Impedance microbiology and microbial screening strategy for detecting pathogens in food

Flint, S., Naila, A. & Bashir, R., Jan 1 2015, High Throughput Screening for Food Safety Assessment: Biosensor Technologies, Hyperspectral Imaging and Practical Applications. Elsevier Inc., p. 285-300 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mechanical Characterization and Shape Optimization of Fascicle-Like 3D Skeletal Muscle Tissues Contracted with Electrical and Optical Stimuli

Neal, D., Sakar, M. S., Bashir, R., Chan, V. & Asada, H. H., Jun 1 2015, In : Tissue Engineering - Part A. 21, 11-12, p. 1848-1858 11 p.

Research output: Contribution to journalArticle

Microfluidics and Nanotechnology for Detection of Global Infectious Diseases

Damhorst, G. L., Murtagh, M., Rodriguez, W. R. & Bashir, R., Feb 1 2015, In : Proceedings of the IEEE. 103, 2, p. 150-160 11 p., 7067024.

Research output: Contribution to journalReview article

Nanopore-based assay for detection of methylation in double-stranded DNA fragments

Shim, J., Kim, Y., Humphreys, G. I., Nardulli, A. M., Kosari, F., Vasmatzis, G., Taylor, W. R., Ahlquist, D. A., Myong, S. & Bashir, R., Jan 27 2015, In : ACS Nano. 9, 1, p. 290-300 11 p.

Research output: Contribution to journalArticle

On-chip metal/polypyrrole quasi-reference electrodes for robust ISFET operation

Duarte-Guevara, C., Swaminathan, V. V., Burgess, M., Reddy, B., Salm, E., Liu, Y. S., Rodriguez-Lopez, J. & Bashir, R., May 21 2015, In : Analyst. 140, 10, p. 3630-3641 12 p.

Research output: Contribution to journalArticle

Optomechanical measurement of the stiffness of single adherent cells

Park, K., Mehrnezhad, A., Corbin, E. A. & Bashir, R., Jul 14 2015, In : Lab on a chip. 15, 17, p. 3460-3464 5 p.

Research output: Contribution to journalArticle

Photopatterning of hydrogel scaffolds coupled to filter materials using stereolithography for perfused 3D culture of hepatocytes

Neiman, J. A. S., Raman, R., Chan, V., Rhoads, M. G., Raredon, M. S. B., Velazquez, J. J., Dyer, R. L., Bashir, R., Hammond, P. T. & Griffith, L. G., Apr 1 2015, In : Biotechnology and bioengineering. 112, 4, p. 777-787 11 p.

Research output: Contribution to journalArticle

Slowing DNA transport using graphene-DNA interactions

Banerjee, S., Wilson, J., Shim, J., Shankla, M., Corbin, E. A., Aksimentiev, A. & Bashir, R., Feb 11 2015, In : Advanced Functional Materials. 25, 6, p. 936-946 11 p.

Research output: Contribution to journalArticle

Smartphone-Imaged HIV-1 Reverse-Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) on a Chip from Whole Blood

Damhorst, G. L., Duarte-Guevara, C., Chen, W., Ghonge, T., Cunningham, B. T. & Bashir, R., Sep 1 2015, In : Engineering. 1, 3, p. 324-335 12 p.

Research output: Contribution to journalArticle