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2010

Adipose tissue depots of Holstein cows are immune responsive: Inflammatory gene expression in vitro

Mukesh, M., Bionaz, M., Graugnard, D. E., Drackley, J. K. & Loor, J. J., Apr 1 2010, In : Domestic Animal Endocrinology. 38, 3, p. 168-178 11 p.

Research output: Contribution to journalArticle

interleukin-6
adipose tissue
Adipose Tissue
tumor necrosis factors
Holstein

Effects of the peroxisome proliferator-activated receptor-α agonists clofibrate and fish oil on hepatic fatty acid metabolism in weaned dairy calves

Litherland, N. B., Bionaz, M., Wallace, R. L., Loor, J. J. & Drackley, J. K., Jun 1 2010, In : Journal of Dairy Science. 93, 6, p. 2404-2418 15 p.

Research output: Contribution to journalArticle

clofibrate
Clofibrate
Peroxisome Proliferator-Activated Receptors
fatty acid metabolism
dairy calves
Oxidative Stress
Remodeling
Oxidative stress
Dairies
Involution

Functional and gene network analyses of transcriptional signatures characterizing pre-weaned bovine mammary parenchyma or fat pad uncovered novel inter-tissue signaling networks during development

Piantoni, P., Bionaz, M., Graugnard, D. E., Daniels, K. M., Everts, R. E., Rodriguez-Zas, S. L., Lewin, H. A., Hurley, H. L., Akers, M. & Loor, J. J., May 26 2010, In : BMC genomics. 11, 1, 331.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Adipose Tissue
Breast
Actins
Intercellular Signaling Peptides and Proteins

Functional annotation of novel lineage-specific genes using co-expression and promoter analysis

Kumar, C. G., Everts, R. E., Loor, J. J. & Lewin, H. A., Mar 9 2010, In : BMC genomics. 11, 1, 161.

Research output: Contribution to journalArticle

Genes
Placenta
Glycerophospholipids
Gene Regulatory Networks
Ruminants

Genomics of metabolic adaptations in the peripartal cow

Loor, J. J., Jul 16 2010, In : Animal. 4, 7, p. 1110-1139 30 p.

Research output: Contribution to journalArticle

genomics
cows
liver
beta oxidation
breasts
HLA-DR alpha-Chains
HLA-A Antigens
Mastitis
Streptococcus
Interleukin-6

High-starch diets induce precocious adipogenic gene network up-regulation in longissimus lumborum of early-weaned Angus cattle

Graugnard, D. E., Berger, L. L., Faulkner, D. B. & Loor, J. J., Apr 1 2010, In : British Journal of Nutrition. 103, 7, p. 953-963 11 p.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Starch
Up-Regulation
Diet
Fatty Acid-Binding Proteins

Mammary gene expression profiles during an intramammary challenge reveal potential mechanisms linking negative energy balance with impaired immune response

Moyes, K. M., Drackley, J. K., Morin, D. E., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A. & Loor, J. J., Apr 1 2010, In : Physiological genomics. 41, 2, p. 161-170 10 p.

Research output: Contribution to journalArticle

Transcriptome
Mastitis
Breast
Streptococcus
Genes

Metabolic and signalling pathway alterations in mammary gland of cows fed saturated or unsaturated fat

Invernizzi, G., Thering, B., Bionaz, M., Savoini, G. & Loor, J. J., Dec 1 2010, In : EAAP Scientific Series. 127, 1, p. 73-74 2 p.

Research output: Contribution to journalArticle

Unsaturated Fats
Human Mammary Glands
Metabolic Networks and Pathways
mammary glands
cows
Adult Stem Cells
Stem cells
Mesenchymal Stromal Cells
Swine
Genes

Sustained upregulation of stearoyl-CoA desaturase in bovine mammary tissue with contrasting changes in milk fat synthesis and lipogenic gene networks caused by lipid supplements

Invernizzi, G., Thering, B. J., McGuire, M. A., Savoini, G. & Loor, J. J., Nov 1 2010, In : Functional and Integrative Genomics. 10, 4, p. 561-575 15 p.

Research output: Contribution to journalArticle

Stearoyl-CoA Desaturase
Soybean Oil
Fish Oils
Gene Regulatory Networks
Milk

T10,c12-18:2-Induced milk fat depression is less pronounced in cows fed high-concentrate diets

Glasser, F., Ferlay, A., Doreau, M., Loor, J. J. & Chilliard, Y., Sep 1 2010, In : Lipids. 45, 9, p. 877-887 11 p.

Research output: Contribution to journalArticle

Nutrition
Milk
Fats
Diet
Fatty Acids

Transcriptomics of muscle and fat development in growing cattle

Loor, J. J., Dec 1 2010, In : EAAP Scientific Series. 127, 1, p. 59-68 10 p.

Research output: Contribution to journalArticle

Muscle Development
transcriptomics
Fats
muscles
cattle

Yak (Bos Grunniens) stomach lysozyme: Molecular cloning, expression and its antibacterial activities

Jiang, M., Chen, Y., Wang, Y., Loor, J. J., Ye, Y., Wen, Y., Zi, X., Cai, Y. & Drackley, J. K., Jan 1 2010, In : Animal Biotechnology. 21, 1, p. 25-35 11 p.

Research output: Contribution to journalArticle

yaks
Cloning
Molecular Cloning
Muramidase
lysozyme
2011

Dietary lipid during the transition period to manipulate subcutaneous adipose tissue peroxisome proliferator-activated receptor-γ co-regulator and target gene expression

Schmitt, E., Ballou, M. A., Correa, M. N., DePeters, E. J., Drackley, J. K. & Loor, J. J., Dec 1 2011, In : Journal of Dairy Science. 94, 12, p. 5913-5925 13 p.

Research output: Contribution to journalArticle

Peroxisome Proliferator-Activated Receptors
Fish Oils
Subcutaneous Fat
Regulator Genes
fish oils

Functional adaptations of the transcriptome to mastitis-causing pathogens: The mammary gland and beyond

Loor, J. J., Kasey, M. M. & Massimo Bionaz, B., Dec 1 2011, In : Journal of Mammary Gland Biology and Neoplasia. 16, 4, p. 305-322 18 p.

Research output: Contribution to journalArticle

Mastitis
Human Mammary Glands
Transcriptome
Breast
STAT5 Transcription Factor

Gene networks driving bovine mammary protein synthesis during the lactation cycle

Bionaz, M. & Loor, J. J., Jun 13 2011, In : Bioinformatics and Biology Insights. 5, p. 83-98 16 p.

Research output: Contribution to journalArticle

Gene Networks
Insulin
Gene Regulatory Networks
Protein Synthesis
Amino Acid Transport Systems

Glucose transporter and hypoxia-associated gene expression in the mammary gland of transition dairy cattle

Mattmiller, S. A., Corl, C. M., Gandy, J. C., Loor, J. J. & Sordillo, L. M., Jun 1 2011, In : Journal of Dairy Science. 94, 6, p. 2912-2922 11 p.

Research output: Contribution to journalArticle

glucose transporters
Facilitative Glucose Transport Proteins
Human Mammary Glands
mammary glands
dairy cattle

Mammary Gland: Gene Networks Controlling Development and Involution

Loor, J. J., Bionaz, M. & Hurley, W. L., Jan 1 2011, Encyclopedia of Dairy Sciences: Second Edition. Elsevier Inc., p. 346-351 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

microarray technology
Gene Regulatory Networks
Human Mammary Glands
mammary glands
Genes

Mammary Gland: Growth, Development and Involution

Hurley, W. L. & Loor, J. J., Jan 1 2011, Encyclopedia of Dairy Sciences: Second Edition. Elsevier Inc., p. 338-345 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Human Mammary Glands
Growth and Development
mammary glands
breasts
growth and development
Mastitis
Human Mammary Glands
Lactation
Genes
Infection

Systems biology and animal nutrition: Insights from the dairy cow during growth and the lactation cycle

Loor, J. J., Bionaz, M. & Invernizzi, G., Oct 10 2011, Systems Biology and Livestock Science. Wiley Blackwell, p. 215-245 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Systems Biology
Dairies
Nutrition
Lactation
Animals
2012

A novel dynamic impact approach (DIA) for functional analysis of time-course omics studies: Validation using the bovine mammary transcriptome

Bionaz, M., Periasamy, K., Rodriguez-Zas, S. L., Hurley, W. L. & Loor, J. J., Mar 16 2012, In : PloS one. 7, 3, e32455.

Research output: Contribution to journalArticle

Functional analysis
Validation Studies
Transcriptome
transcriptome
breasts

Application of Top-Down and bottom-up systems approaches in ruminant physiology and metabolism

Shahzad, K. & Loor, J. J., Jul 23 2012, In : Current Genomics. 13, 5, p. 379-394 16 p.

Research output: Contribution to journalReview article

Systems Biology
Ruminants
Physiological Phenomena
Livestock
Human Genome

Bioinformatics analysis of microRNA and putative target genes in bovine mammary tissue infected with Streptococcus uberis

Naeem, A., Zhong, K., Moisá, S. J., Drackley, J. K., Moyes, K. M. & Loor, J. J., Nov 1 2012, In : Journal of Dairy Science. 95, 11, p. 6397-6408 12 p.

Research output: Contribution to journalArticle

Streptococcus uberis
Streptococcus
Computational Biology
MicroRNAs
microRNA

Blood immunometabolic indices and polymorphonuclear neutrophil function in peripartum dairy cows are altered by level of dietary energy prepartum

Graugnard, D. E., Bionaz, M., Trevisi, E., Moyes, K. M., Johnson, J. L., Wallace, R. L., Drackley, J. K., Bertoni, G. & Loor, J. J., Apr 1 2012, In : Journal of Dairy Science. 95, 4, p. 1749-1758 10 p.

Research output: Contribution to journalArticle

Peripartum Period
Postpartum Period
neutrophils
Neutrophils
dairy cows

Corium tissue expression of genes associated with inflammation, oxidative stress, and keratin formation in relation to lameness in dairy cows

Osorio, J. S., Fraser, B. C., Graugnard, D. E., Singh, S. S., Drackley, J. K., Garrett, E. F. & Loor, J. J., Nov 1 2012, In : Journal of Dairy Science. 95, 11, p. 6388-6396 9 p.

Research output: Contribution to journalArticle

Hoof and Claw
keratin
claws
Dermis
Keratins

Duodenal infusion of α-linolenic acid affects fatty acid metabolism in the mammary gland of lactating dairy cows

Yang, G., Bu, D. P., Wang, J. Q., Khas-Erdene, Zhou, L. Y. & Loor, J. J., Oct 1 2012, In : Journal of Dairy Science. 95, 10, p. 5821-5830 10 p.

Research output: Contribution to journalArticle

alpha-Linolenic Acid
fatty acid metabolism
Human Mammary Glands
linolenic acid
mammary glands

Effect of incremental levels of fish oil supplementation on specific bacterial populations in bovine ruminal fluid

Liu, S. J., Bu, D. P., Wang, J. Q., Liu, L., Liang, S., Wei, H. Y., Zhou, L. Y., Li, D. & Loor, J. J., Feb 1 2012, In : Journal of Animal Physiology and Animal Nutrition. 96, 1, p. 9-16 8 p.

Research output: Contribution to journalArticle

Fish Oils
rumen fluids
fish oils
sunflower oil
Ruminococcus

Effects of feeding roasted safflower seeds (variety IL-111) and fish oil on dry matter intake, performance and milk fatty acid profiles in dairy cattle

Alizadeh, A. R., Alikhani, M., Ghorbani, G. R., Rahmani, H. R., Rashidi, L. & Loor, J. J., Jun 1 2012, In : Journal of Animal Physiology and Animal Nutrition. 96, 3, p. 466-473 8 p.

Research output: Contribution to journalArticle

Carthamus tinctorius
safflower seed
Fish Oils
fish oils
dry matter intake
Monoacylglycerol Lipases
pro-opiomelanocortin
Pro-Opiomelanocortin
Endocannabinoids
feeding level
Peroxisome Proliferator-Activated Receptors
Ruminants
Lipid Metabolism
Fatty Acids
Gene Expression

Level of nutrient intake affects mammary gland gene expression profiles in preweaned Holstein heifers

Piantoni, P., Daniels, K. M., Everts, R. E., Rodriguez-Zas, S. L., Lewin, H. A., Hurley, W. L., Akers, R. M. & Loor, J. J., May 1 2012, In : Journal of Dairy Science. 95, 5, p. 2550-2561 12 p.

Research output: Contribution to journalArticle

Human Mammary Glands
Transcriptome
nutrient intake
mammary glands
heifers

MicroRNA expression patterns in the bovine mammary gland are affected by stage of lactation

Wang, M., Moisá, S., Khan, M. J., Wang, J., Bu, D. & Loor, J. J., Nov 1 2012, In : Journal of Dairy Science. 95, 11, p. 6529-6535 7 p.

Research output: Contribution to journalArticle

lactation stage
Human Mammary Glands
MicroRNAs
microRNA
Lactation

Old and new stories: Revelations from functional analysis of the bovine mammary transcriptome during the lactation cycle

Bionaz, M., Periasamy, K., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., Hurley, W. L. & Loor, J. J., Mar 12 2012, In : PloS one. 7, 3, e33268.

Research output: Contribution to journalArticle

Functional analysis
Transcriptome
Lactation
transcriptome
breasts
overfeeding
Gene Regulatory Networks
Subcutaneous Fat
adipose tissue
signal transduction
rumen development
feeding level
cell proliferation
Milk
Holstein
Systems Integration
Systems Biology
functional response
ruminant
Ruminants

Short communication: Endoplasmic reticulum stress gene network expression in bovine mammary tissue during the lactation cycle

Invernizzi, G., Naeem, A. & Loor, J. J., May 1 2012, In : Journal of Dairy Science. 95, 5, p. 2562-2566 5 p.

Research output: Contribution to journalArticle

Endoplasmic Reticulum Stress
Gene Regulatory Networks
Lactation
endoplasmic reticulum
breasts
2013

Assessing and managing body condition score for the prevention of metabolic disease in dairy cows

Roche, J. R., Kay, J. K., Friggens, N. C., Loor, J. J. & Berry, D. P., Jul 1 2013, In : Veterinary Clinics of North America - Food Animal Practice. 29, 2, p. 323-336 14 p.

Research output: Contribution to journalReview article

Metabolic Diseases
metabolic diseases
body condition
Milk
dairy cows

Bioinformatics analysis of transcriptome dynamics during growth in Angus cattle longissimus muscle

Moisá, S. J., Shike, D. W., Graugnard, D. E., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., Faulkner, D. B., Berger, L. L. & Loor, J. J., Jan 1 2013, In : Bioinformatics and Biology Insights. 7, p. 253-270 18 p.

Research output: Contribution to journalArticle

Gene Expression Profiling
Bioinformatics
Computational Biology
Muscle
Genes

Bioinformatics and gene network analyses of the swine mammary gland transcriptome during late gestation

Zhao, W., Shahzad, K., Jiang, M., Graugnard, D. E., Rodriguez-Zas, S. L., Luo, J., Loor, J. J. & Hurley, W. L., Jul 19 2013, In : Bioinformatics and Biology Insights. 7, p. 193-216 24 p.

Research output: Contribution to journalArticle

Interleukin-4 Receptors
Gene Networks
Gene Regulatory Networks
Human Mammary Glands
Bioinformatics

Calving body condition score affects indicators of health in grazing dairy cows

Roche, J. R., Macdonald, K. A., Schütz, K. E., Matthews, L. R., Verkerk, G. A., Meier, S., Loor, J. J., Rogers, A. R., McGowan, J., Morgan, S. R., Taukiri, S. & Webster, J. R., Sep 1 2013, In : Journal of Dairy Science. 96, 9, p. 5811-5825 15 p.

Research output: Contribution to journalArticle

Lactation
body condition
calving
dairy cows
grazing

Calving body condition score affects indicators of health in grazing dairy cows

Roche, J. R., Macdonald, K. A., Schütz, K. E., Matthews, L. R., Verkerk, G. A., Meier, S., Loor, J. J., Rogers, A. R., McGowan, J., Morgan, S. R., Taukiri, S. & Webster, J. R., Sep 1 2013, In : Journal of Dairy Science. 96, 9, p. 5811-5825 15 p.

Research output: Contribution to journalArticle

Lactation
body condition
calving
dairy cows
grazing

Cattle genomics and its implications for future nutritional strategies for dairy cattle

Seo, S., Larkin, D. M. & Loor, J. J., Mar 1 2013, In : Animal. 7, SUPPL.1, p. 172-183 12 p.

Research output: Contribution to journalArticle

dairy cattle
genomics
cattle
genome
genes

Change in subcutaneous adipose tissue metabolism and gene network expression during the transition period in dairy cows, including differences due to sire genetic merit1

Khan, M. J., Hosseini, A., Burrell, S., Rocco, S. M., McNamara, J. P. & Loor, J. J., Apr 1 2013, In : Journal of Dairy Science. 96, 4, p. 2171-2182 12 p.

Research output: Contribution to journalArticle

genetic merit
Gene Regulatory Networks
Subcutaneous Fat
adipose tissue
sires

Dietary lipid during late-pregnancy and early-lactation to manipulate metabolic and inflammatory gene network expression in dairy cattle liver with a focus on PPARs

Akbar, H., Schmitt, E., Ballou, M. A., Corrêa, M. N., DePeters, E. J. & Loor, J. J., Jun 21 2013, In : Gene Regulation and Systems Biology. 2013, 7, p. 103-123 21 p.

Research output: Contribution to journalArticle

Peroxisome Proliferator-Activated Receptors
Dairies
lactation
Gene Regulatory Networks
early lactation

Dietary marine algae and its influence on tissue gene network expression during milk fat depression in dairy ewes

Bichi, E., Frutos, P., Toral, P. G., Keisler, D., Hervás, G. & Loor, J. J., Oct 11 2013, In : Animal Feed Science and Technology. 186, 1-2, p. 36-44 9 p.

Research output: Contribution to journalArticle

algae
dairy sheep
milk fat
breasts
liver
Gene Regulatory Networks
Energy Intake
Colostrum
neutrophils
heifers