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2011

Small molecule analysis and imaging of fatty acids in the zebra finch song system using time-of-flight-secondary ion mass spectrometry

Amaya, K. R., Sweedler, J. V. & Clayton, D. F., Aug 1 2011, In : Journal of Neurochemistry. 118, 4, p. 499-511 13 p.

Research output: Contribution to journalArticle

Secondary Ion Mass Spectrometry
Finches
Equidae
Music
Secondary ion mass spectrometry

Stretched tissue mounting for MALDI mass spectrometry imaging

Tucker, K. R., Lanni, E. J., Serebryannyy, L. A., Rubakhin, S. & Sweedler, J. V., Dec 1 2011, In : Analytical chemistry. 83, 23, p. 9181-9185 5 p.

Research output: Contribution to journalArticle

Mountings
Ionization
Mass spectrometry
Desorption
Tissue

The enzyme function initiative

Gerlt, J. A., Allen, K. N., Almo, S. C., Armstrong, R. N., Babbitt, P. C., Cronan, J. E., Dunaway-Mariano, D., Imker, H. J., Jacobson, M. P., Minor, W., Poulter, C. D., Raushel, F. M., Sali, A., Shoichet, B. K. & Sweedler, J. V., Nov 22 2011, In : Biochemistry. 50, 46, p. 9950-9962 13 p.

Research output: Contribution to journalReview article

Enzymes
Microbiology
Genes
Amidohydrolases
Genome

The mechanical sensitivity of vesicle dynamics in in vivo and in vitro neurons

Ahmed, W. W., Li, T. C., Rubakhin, S., Chiba, A., Sweedler, J. V. & Saif, M. T. A., Nov 23 2011, Technical Proceedings of the 2011 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2011. p. 436-439 4 p. (Technical Proceedings of the 2011 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2011; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Neurons
Cones
Imaging techniques
Compaction

The modified-bead stretched sample method: Development and application to MALDI-MS imaging of protein localization in the spinal cord

Tucker, K. R., Serebryannyy, L. A., Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., May 9 2011, In : Chemical Science. 2, 4, p. 785-795 11 p.

Research output: Contribution to journalArticle

Ionization
Mass spectrometry
Desorption
Imaging techniques
Peptides

The Notch effector gene Hes1 regulates migration of hypothalamic neurons, neuropeptide content and axon targeting to the pituitary

Aujla, P. K., Bora, A., Monahan, P., Sweedler, J. V. & Raetzman, L. T., May 1 2011, In : Developmental Biology. 353, 1, p. 61-71 11 p.

Research output: Contribution to journalArticle

Arginine Vasopressin
Neuropeptides
Axons
Supraoptic Nucleus
Paraventricular Hypothalamic Nucleus

Using microfluidics and mass spectrometry to study peptide release in neurons

Croushore, C. A., Lee, C. Y., Zhong, M. & Sweedler, J. V., Dec 1 2011, 15th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2011, MicroTAS 2011. p. 858-860 3 p. (15th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2011, MicroTAS 2011; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Microfluidics
Peptides
Neurons
Mass spectrometry
Silicon wafers
2012

1-methylthio-d-xylulose 5-phosphate methylsulfurylase: A novel route to 1-deoxy-d-xylulose 5-phosphate in Rhodospirillum rubrum

Warlick, B. P., Evans, B. S., Erb, T. J., Ramagopal, U. A., Sriram, J., Imker, H. J., Sauder, J. M., Bonanno, J. B., Burley, S. K., Tabita, F. R., Almo, S. C., Sweedler, J. S. & Gerlt, J. A., Oct 23 2012, In : Biochemistry. 51, 42, p. 8324-8326 3 p.

Research output: Contribution to journalArticle

Rhodospirillum rubrum
Salvaging
S-Adenosylmethionine
Biosynthesis
Terpenes

A hyphenated optical trap capillary electrophoresis laser induced native fluorescence system for single-cell chemical analysis

Cecala, C., Rubakhin, S. S., Mitchell, J. W., Gillette, M. U. & Sweedler, J. V., Jul 7 2012, In : Analyst. 137, 13, p. 2965-2972 8 p.

Research output: Contribution to journalReview article

Optical Tweezers
Single-Cell Analysis
Capillary electrophoresis
Capillary Electrophoresis
chemical analysis

Analyses of pig genomes provide insight into porcine demography and evolution

Groenen, M. A. M., Archibald, A. L., Uenishi, H., Tuggle, C. K., Takeuchi, Y., Rothschild, M. F., Rogel-Gaillard, C., Park, C., Milan, D., Megens, H. J., Li, S., Larkin, D. M., Kim, H., Frantz, L. A. F., Caccamo, M., Ahn, H., Aken, B. L., Anselmo, A., Anthon, C., Auvil, L. & 116 others, Badaoui, B., Beattie, C. W., Bendixen, C., Berman, D., Blecha, F., Blomberg, J., Bolund, L., Bosse, M., Botti, S., Bujie, Z., Bystrom, M., Capitanu, B., Carvalho-Silva, D., Chardon, P., Chen, C., Cheng, R., Choi, S. H., Chow, W., Clark, R. C., Clee, C., Crooijmans, R. P. M. A., Dawson, H. D., Dehais, P., De Sapio, F., Dibbits, B., Drou, N., Du, Z. Q., Eversole, K., Fadista, J., Fairley, S., Faraut, T., Faulkner, G. J., Fowler, K. E., Fredholm, M., Fritz, E., Gilbert, J. G. R., Giuffra, E., Gorodkin, J., Griffin, D. K., Harrow, J. L., Hayward, A., Howe, K., Hu, Z. L., Humphray, S. J., Hunt, T., Hornshoøj, H., Jeon, J. T., Jern, P., Jones, M., Jurka, J., Kanamori, H., Kapetanovic, R., Kim, J., Kim, J. H., Kim, K. W., Kim, T. H., Larson, G., Lee, K., Lee, K. T., Leggett, R., Lewin, H. A., Li, Y., Liu, W., Loveland, J. E., Lu, Y., Lunney, J. K., Ma, J., Madsen, O., Mann, K., Matthews, L., McLaren, S., Morozumi, T., Murtaugh, M. P., Narayan, J., Nguyen, D. T., Ni, P., Oh, S. J., Onteru, S., Panitz, F., Park, E. W., Park, H. S., Pascal, G., Paudel, Y., Perez-Enciso, M., Ramirez-Gonzalez, R., Reecy, J. M., Rodriguez-Zas, S., Rohrer, G. A., Rund, L., Sang, Y., Schachtschneider, K., Schraiber, J. G., Schwartz, J., Scobie, L., Scott, C., Searle, S., Servin, B., Southey, B. R., Sperber, G., Stadler, P., Sweedler, J. V., Tafer, H., Thomsen, B., Wali, R., Wang, J., Wang, J., White, S., Xu, X., Yerle, M., Zhang, G., Zhang, J., Zhang, J., Zhao, S., Rogers, J., Churcher, C. & Schook, L. B., Nov 15 2012, In : Nature. 491, 7424, p. 393-398 6 p.

Research output: Contribution to journalArticle

Sus scrofa
Swine
Demography
Genome
Smell

Analytical chemistry: The synergies between the division and the journal

Sweedler, J. V. & Koppenaal, D. W., Nov 6 2012, In : Analytical chemistry. 84, 21, 1 p.

Research output: Contribution to journalEditorial

Chemical analysis

An enhanced protein crosslink identification strategy using CID-cleavable chemical crosslinkers and LC/MS n analysis

Liu, F., Wu, C., Sweedler, J. V. & Goshe, M. B., Feb 1 2012, In : Proteomics. 12, 3, p. 401-405 5 p.

Research output: Contribution to journalComment/debate

Peptides
aspartyl-proline
Proteins
Cross-Linking Reagents
Optical resolving power

A protease for 'middle-down' proteomics

Wu, C., Tran, J. C., Zamdborg, L., Durbin, K. R., Li, M., Ahlf, D. R., Early, B. P., Thomas, P. M., Sweedler, J. V. & Kelleher, N. L., Aug 1 2012, In : Nature Methods. 9, 8, p. 822-824 3 p.

Research output: Contribution to journalArticle

Proteomics
Peptide Hydrolases
Proteolysis
Peptide T
Membranes

Are we growing more picky, more careless or simply under more pressure?

Sweedler, J. V., Aug 7 2012, In : Analytical chemistry. 84, 15, 1 p.

Research output: Contribution to journalEditorial

A RubisCO-like protein links SAM metabolism with isoprenoid biosynthesis

Erb, T. J., Evans, B. S., Cho, K., Warlick, B. P., Sriram, J., Wood, B. M. K., Imker, H. J., Sweedler, J. V., Tabita, F. R. & Gerlt, J. A., Nov 2012, In : Nature chemical biology. 8, 11, p. 926-932 7 p.

Research output: Contribution to journalArticle

Oxygenases
Terpenes
Rhodospirillum rubrum
S-Adenosylmethionine
Metabolomics

Circadian rhythm of redox state regulates excitability in suprachiasmatic nucleus neurons

Wang, T. A., Yu, Y. V., Govindaiah, G., Ye, X., Artinian, L., Coleman, T. P., Sweedler, J. V., Cox, C. L. & Gillette, M. U., Aug 17 2012, In : Science. 337, 6096, p. 839-842 4 p.

Research output: Contribution to journalArticle

Suprachiasmatic Nucleus
Circadian Rhythm
Neurons
Circadian Clocks
Potassium Channels

Collaborators, colleagues, and friends need not be listed

Sweedler, J. V., May 1 2012, In : Analytical chemistry. 84, 9, 1 p.

Research output: Contribution to journalEditorial

Comparative peptidomics analysis of neural adaptations in rats repeatedly exposed to amphetamine

Romanova, E. V., Lee, J. E., Kelleher, N. L., Sweedler, J. V. & Gulley, J. M., Nov 1 2012, In : Journal of Neurochemistry. 123, 2, p. 276-287 12 p.

Research output: Contribution to journalArticle

Amphetamine
Rats
Peptides
Mass spectrometry
Liquid chromatography

D-Aspartate acts as a signaling molecule in nervous and neuroendocrine systems

Ota, N., Shi, T. & Sweedler, J. V., Nov 1 2012, In : Amino Acids. 43, 5, p. 1873-1886 14 p.

Research output: Contribution to journalReview article

D-Aspartic Acid
Neurosecretory Systems
Nervous System
Molecules
Biosynthesis

Don't grow your article too long: We do have length guidelines

Sweedler, J. V., Jul 3 2012, In : Analytical chemistry. 84, 13, 1 p.

Research output: Contribution to journalEditorial

Evaluation of database search programs for accurate detection of neuropeptides in tandem mass spectrometry experiments

Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Dec 7 2012, In : Journal of Proteome Research. 11, 12, p. 6044-6055 12 p.

Research output: Contribution to journalArticle

Tandem Mass Spectrometry
Neuropeptides
Mass spectrometry
Databases
Peptides

Filling Royce's shoes

Sweedler, J., Jan 3 2012, In : Analytical chemistry. 84, 1, 1 p.

Research output: Contribution to journalEditorial

First survey and functional annotation of prohormone and convertase genes in the pig

Porter, K. I., Southey, B. R., Sweedler, J. V. & Rodriguez-Zas, S. L., Nov 15 2012, In : BMC genomics. 13, 1, 582.

Research output: Contribution to journalArticle

Proprotein Convertases
Swine
Urocortins
Neuropeptides
Genes

Glial D-serine gates NMDA receptors at excitatory synapses in prefrontal cortex

Fossat, P., Turpin, F. R., Sacchi, S., Dulong, J., Shi, T., Rivet, J. M., Sweedler, J. V., Pollegioni, L., Millan, M. J., Oliet, S. H. R. & Mothet, J. P., Mar 1 2012, In : Cerebral Cortex. 22, 3, p. 595-606 12 p.

Research output: Contribution to journalArticle

Prefrontal Cortex
N-Methyl-D-Aspartate Receptors
Neuroglia
Synapses
Serine

Label-free quantitation of peptide release from neurons in a microfluidic device with mass spectrometry imaging

Zhong, M., Lee, C. Y., Croushore, C. A. & Sweedler, J. V., May 8 2012, In : Lab on a chip. 12, 11, p. 2037-2045 9 p.

Research output: Contribution to journalArticle

Lab-On-A-Chip Devices
Microfluidics
Peptides
Neurons
Mass spectrometry

Let's get social

Sweedler, J. V., Apr 3 2012, In : Analytical chemistry. 84, 7, 1 p.

Research output: Contribution to journalEditorial

Mass spectrometry imaging and profiling of single cells

Lanni, E. J., Rubakhin, S. & Sweedler, J. V., Aug 30 2012, In : Journal of Proteomics. 75, 16, p. 5036-5051 16 p.

Research output: Contribution to journalReview article

Mass spectrometry
Secondary Ion Mass Spectrometry
Mass Spectrometry
Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
Imaging techniques

Mechanical tension modulates local and global vesicle dynamics in neurons

Ahmed, W. W., Li, T. C., Rubakhin, S., Chiba, A., Sweedler, J. V. & Saif, M. T. A., Jun 1 2012, In : Cellular and Molecular Bioengineering. 5, 2, p. 155-164 10 p.

Research output: Contribution to journalArticle

Vesicles
Aplysia
Drosophila
Neurons
Synaptic Vesicles

Metabolomics in analytical chemistry

Sweedler, J. V., Jul 17 2012, In : Analytical chemistry. 84, 14, 1 p.

Research output: Contribution to journalEditorial

Analytical Chemistry Techniques
Metabolomics
Chemical analysis

Microfluidic device for the selective chemical stimulation of neurons and characterization of peptide release with mass spectrometry

Croushore, C. A., Supharoek, S. A., Lee, C. Y., Jakmunee, J. & Sweedler, J. V., Nov 6 2012, In : Analytical chemistry. 84, 21, p. 9446-9452 7 p.

Research output: Contribution to journalArticle

Lab-On-A-Chip Devices
Chemical Stimulation
Microfluidics
Neurons
Mass spectrometry

Now it is a highlight, not an acceleration

Sweedler, J. V., Sep 4 2012, In : Analytical chemistry. 84, 17, 1 p.

Research output: Contribution to journalEditorial

Peptidomic analyses of mouse astrocytic cell lines and rat primary cultured astrocytes

Yin, P., Knolhoff, A. M., Rosenberg, H. J., Millet, L. J., Gillette, M. U. & Sweedler, J. V., Aug 3 2012, In : Journal of Proteome Research. 11, 8, p. 3965-3973 9 p.

Research output: Contribution to journalArticle

Astrocytes
Rats
Cells
Cell Line
Peptides

Professional Editors or Scientist Editors? Both perspectives have value.

Sweedler, J. V., Mar 6 2012, In : Analytical chemistry. 84, 5, 1 p.

Research output: Contribution to journalEditorial

Rejections with editorial expertise and without external review: Are these fair?

Sweedler, J. V., Dec 4 2012, In : Analytical chemistry. 84, 23, 1 p.

Research output: Contribution to journalEditorial

Relative quantitation of neuropeptides over a thousand-fold concentration range

Hou, X., Xie, F. & Sweedler, J. V., Dec 1 2012, In : Journal of the American Society for Mass Spectrometry. 23, 12, p. 2083-2093 11 p.

Research output: Contribution to journalArticle

Neuropeptides
Mass spectrometry
Mass Spectrometry
Peptides
Electrospray ionization

Reviews, perspectives, features: What's the difference?

Sweedler, J. V., Feb 7 2012, In : Analytical chemistry. 84, 3, 1 p.

Research output: Contribution to journalEditorial

Sampling techniques for single-cell electrophoresis

Cecala, C. & Sweedler, J. V., Jul 7 2012, In : Analyst. 137, 13, p. 2922-2929 8 p.

Research output: Contribution to journalReview article

Electrophoresis
electrokinesis
Sampling
detection method
Microfluidics
Secondary Ion Mass Spectrometry
Molecular Imaging
Secondary ion mass spectrometry
Neurons
Imaging techniques

Serotonin of mast cell origin contributes to hippocampal function

Nautiyal, K. M., Dailey, C. A., Jahn, J. L., Rodriquez, E., Son, N. H., Sweedler, J. V. & Silver, R., Aug 1 2012, In : European Journal of Neuroscience. 36, 3, p. 2347-2359 13 p.

Research output: Contribution to journalArticle

Mast Cells
Serotonin
Neurogenesis
Hippocampus
Fluoxetine

Single-cell metabolomics: Changes in the metabolome of freshly isolated and cultured neurons

Nemes, P., Knolhoff, A. M., Rubakhin, S. S. & Sweedler, J. V., Oct 17 2012, In : ACS Chemical Neuroscience. 3, 10, p. 782-792 11 p.

Research output: Contribution to journalArticle

Metabolomics
Metabolome
Neurons
Glycerol
Metabolites
Single-Cell Analysis
Neuropeptides
Neurons
Mass spectrometry
Molecules

The Hypothalamic-Neurohypophyseal System: From Genome to Physiology

Murphy, D., Konopacka, A., Hindmarch, C., Paton, J. F. R., Sweedler, J. V., Gillette, M. U., Ueta, Y., Grinevich, V., Lozic, M. & Japundzic-Zigon, N., Apr 1 2012, In : Journal of Neuroendocrinology. 24, 4, p. 539-553 15 p.

Research output: Contribution to journalReview article

Oxytocin
Optogenetics
Genome
Neuroanatomy
Electrophysiology

Therapeutic peptide production in Drosophila

Park, D., Hou, X., Sweedler, J. V. & Taghert, P. H., Aug 1 2012, In : Peptides. 36, 2, p. 251-256 6 p.

Research output: Contribution to journalArticle

Drosophila
Peptides
Metabolic Engineering
Metabolic engineering
Therapeutics

Two unrelated items to avoid, one for me and one for you

Sweedler, J. V., Jun 5 2012, In : Analytical chemistry. 84, 11, p. 4635-4636 2 p.

Research output: Contribution to journalEditorial

Urotensin II in Invertebrates: From Structure to Function in Aplysia californica

Romanova, E. V., Sasaki, K., Alexeeva, V., Vilim, F. S., Jing, J., Richmond, T. A., Weiss, K. R. & Sweedler, J. V., Nov 8 2012, In : PloS one. 7, 11, e48764.

Research output: Contribution to journalArticle

Aplysia
Invertebrates
invertebrates
neuropeptides
vertebrates
2013

Are we virtual yet?

Sweedler, J. V., Apr 2 2013, In : Analytical chemistry. 85, 7, 1 p.

Research output: Contribution to journalEditorial

Capillary electrophoresis
Capillary Electrophoresis
Metabolites
Tryptophan
Tyrosine

Buyer beware! Think twice when selecting a journal (or attending a conference)

Sweedler, J. V., Nov 5 2013, In : Analytical chemistry. 85, 21, 1 p.

Research output: Contribution to journalEditorial

Characterization of GdFFD, a D-amino acid-containing neuropeptide that functions as an extrinsic modulator of the Aplysia feeding circuit

Bai, L., Livnat, I., Romanova, E. V., Alexeeva, V., Yau, P. M., Vilim, F. S., Weiss, K. R., Jing, J. & Sweedler, J. V., Nov 15 2013, In : Journal of Biological Chemistry. 288, 46, p. 32837-32851 15 p.

Research output: Contribution to journalArticle

Aplysia
Neuropeptides
Modulators
Amino Acids
Peptides