- 1 - 50 out of 274 results
- Publication Year, Title (ascending)
2010
A hybrid, de novo based, genome-wide database search approach applied to the sea urchin neuropeptidome
Menschaert, G., Vandekerckhove, T. T. M., Baggerman, G., Landuyt, B., Sweedler, J. V., Schoofs, L., Luyten, W. & Van Criekinge, W., Feb 5 2010, In : Journal of Proteome Research. 9, 2, p. 990-996 7 p.Research output: Contribution to journal › Article
Sea Urchins
Genes
Genome
Databases
Search Engine
A mass spectrometry primer for mass spectrometry imaging
Rubakhin, S. S. & Sweedler, J. V., Dec 1 2010, Mass Spectrometry Imaging: Principles and Protocols. Rubakhin, S. & Sweedler, J. (eds.). p. 21-49 29 p. (Methods in Molecular Biology; vol. 656).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Tandem Mass Spectrometry
Mass Spectrometry
Molecular Biology
Research Personnel
Guidelines
Base-induced delignification of miscanthus x giganteus studied by three-dimensional confocal raman imaging
Chu, L. Q., Masyuko, R., Sweedler, J. V. & Bohn, P. W., Jul 1 2010, In : Bioresource Technology. 101, 13, p. 4919-4925 7 p.Research output: Contribution to journal › Article
Delignification
Lignin
lignin
Cellulose
Cells
Circadian integration of glutamatergic signals by little SAAS in novel suprachiasmatic circuits
Atkins, N., Mitchell, J. W., Romanova, E. V., Morgan, D. J., Cominski, T. P., Ecker, J. L., Pintar, J. E., Sweedler, J. V. & Gillette, M. U., Nov 1 2010, In : PloS one. 5, 9, p. 1-13 13 p., e12612.Research output: Contribution to journal › Article
Suprachiasmatic Nucleus
Gastrin-Releasing Peptide
Light
Networks (circuits)
Vasoactive Intestinal Peptide
Comparison of sample pre-treatments for laser desorption ionization and secondary ion mass spectrometry imaging of Miscanthus × giganteus
Li, Z., Bohn, P. W. & Sweedler, J. V., Jul 1 2010, In : Bioresource Technology. 101, 14, p. 5578-5585 8 p.Research output: Contribution to journal › Article
Secondary ion mass spectrometry
Ionization
Mass spectrometry
Desorption
desorption
Composite modulatory feedforward loop contributes to the establishment of a network state
Wu, J. S., Vilim, F. S., Hatcher, N. G., Due, M. R., Sweedler, J. V., Weiss, K. R. & Jing, J., Apr 1 2010, In : Journal of neurophysiology. 103, 4, p. 2174-2184 11 p.Research output: Contribution to journal › Article
Interneurons
Central Pattern Generators
Aplysia
Peptides
Cheek
Direct cellular peptidomics of supraoptic magnocellular and hippocampal neurons in low-density cocultures
Millet, L. J., Bora, A., Sweedler, J. V. & Gillette, M. U., Jan 20 2010, In : ACS Chemical Neuroscience. 1, 1, p. 36-48 13 p.Research output: Contribution to journal › Article
Coculture Techniques
Neurons
Peptides
Neurokinin B
Chromogranins
Distinct mechanisms produce functionally complementary actions of neuropeptides that are structurally related but derived from different precursors
Vilim, F. S., Sasaki, K., Rybak, J., Alexeeva, V., Cropper, E. C., Jing, J., Orekhova, I. V., Brezina, V., Price, D., Romanova, E. V., Rubakhin, S. S., Hatcher, N., Sweedler, J. V. & Weiss, K. R., Jan 6 2010, In : Journal of Neuroscience. 30, 1, p. 131-147 17 p.Research output: Contribution to journal › Article
FMRFamide
Neuropeptides
Sensory Receptor Cells
Aplysia
Muscles
Electrokinetic control of fluid transport in gold-coated nanocapillary array membranes in hybrid nanofluidic-microfluidic devices
Piruska, A., Branagan, S. P., Minnis, A. B., Wang, Z., Cropek, D. M., Sweedler, J. V. & Bohn, P. W., 2010, In : Lab on a chip. 10, 10, p. 1237-1244 8 p.Research output: Contribution to journal › Article
Lab-On-A-Chip Devices
Nanofluidics
Neural Cell Adhesion Molecules
Microfluidics
Gold
Endogenous peptide discovery of the rat circadian clock: A focused study of the suprachiasmatic nucleus by ultrahigh performance tandem mass spectrometry
Lee, J. E., Atkins, N., Hatcher, N. G., Zamdborg, L., Gillette, M. U., Sweedler, J. V. & Kelleher, N. L., Feb 1 2010, In : Molecular and Cellular Proteomics. 9, 2, p. 285-297 13 p.Research output: Contribution to journal › Article
Circadian Clocks
Suprachiasmatic Nucleus
Tandem Mass Spectrometry
Mass spectrometry
Rats
Feedforward compensation mediated by the central and peripheral actions of a single neuropeptide discovered using representational difference analysis
Jing, J., Sweedler, J. V., Cropper, E. C., Alexeeva, V., Park, J. H., Romanova, E. V., Xie, F., Dembrow, N. C., Ludwar, B. C., Weiss, K. R. & Vilim, F. S., Dec 8 2010, In : Journal of Neuroscience. 30, 49, p. 16545-16558 14 p.Research output: Contribution to journal › Article
Neuropeptides
Cheek
Interneurons
Peptides
Aplysia
Fishing for the hidden peptidome in health and disease (Drug Abuse)
Fricker, L. D. & Sweedler, J. V., Dec 1 2010, In : AAPS Journal. 12, 4, p. 679-682 4 p.Research output: Contribution to journal › Review article
Substance-Related Disorders
Health
Proteins
Peptides
Peptide Receptors
Genome-wide analyses reveal a role for peptide hormones in planarian germline development
Collins, J. J., Hou, X., Romanova, E. V., Lambrus, B. G., Miller, C. M., Saberi, A., Sweedler, J. V. & Newmark, P. A., Oct 1 2010, In : PLoS biology. 8, 10, e1000509.Research output: Contribution to journal › Article
Platyhelminths
Planarians
peptide hormones
Peptide Hormones
Platyhelminthes
Genome-wide census and expression profiling of chicken neuropeptide and prohormone convertase genes
Delfino, K. R., Southey, B. R., Sweedler, J. V. & Rodriguez-Zas, S. L., Feb 1 2010, In : Neuropeptides. 44, 1, p. 31-44 14 p.Research output: Contribution to journal › Article
Proprotein Convertases
Censuses
Neuropeptides
Chickens
Genome
Mass spectrometry–based methodologies for single-cell metabolite detection and identification
Knolhoff, A. M., Nemes, P., Rubakhin, S. & Sweedler, J. V., Jan 1 2010, Methodologies for Metabolomics: Experimental Strategies and Techniques. Cambridge University Press, p. 119-139 21 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Metabolites
Fluorescence
Tissue
Metabolomics
Biochemistry
Mass Spectrometry Imaging: Principles and Protocols
Rubakhin, S. (ed.) & Sweedler, J. V. (ed.), 2010, Humana Press. 488 p. (Methods in Molecular Biology; vol. 656)Research output: Book/Report › Book
Mass spectrometry
Imaging techniques
Molecular biology
Xenobiotics
Metabolites
Mass spectrometry imaging using the stretched sample approach
Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., Dec 1 2010, Mass Spectrometry Imaging: Principles and Protocols. Rubakhin, S. & Sweedler, J. (eds.). p. 465-479 15 p. (Methods in Molecular Biology; vol. 656).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Mass Spectrometry
Membranes
Lasers
Computer-Assisted Image Processing
Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
Mass spectrometry screening reveals peptides modulated differentially in the medial prefrontal cortex of rats with disparate initial sensitivity to cocaine
Romanova, E. V., Lee, J. E., Kelleher, N. L., Sweedler, J. V. & Gulley, J. M., Sep 1 2010, In : AAPS Journal. 12, 3, p. 443-454 12 p.Research output: Contribution to journal › Article
Mass Screening
Prefrontal Cortex
Cocaine
Mass Spectrometry
Peptides
Methodologies for metabolomics: Experimental strategies and techniques
Lutz, N. W., Sweedler, J. V. & Wevers, R. A., Jan 1 2010, Cambridge University Press. 627 p.Research output: Book/Report › Book
Metabolomics
Metabolites
Physiological Phenomena
Pathologic Processes
Metabolic Networks and Pathways
Nanofluidics in chemical analysis
Piruska, A., Gong, M., Sweedler, J. V. & Bohn, P. W., Mar 1 2010, In : Chemical Society Reviews. 39, 3, p. 1060-1072 13 p.Research output: Contribution to journal › Review article
Nanofluidics
Nanopores
Chemical analysis
Microfluidics
Microsensors
Neuropeptide release is impaired in a mouse model of fragile x mental retardation syndrome
Annangudi, S. P., Luszpak, A. E., Kim, S. H., Ren, S., Hatcher, N. G., Weiler, I. J., Thornley, K. T., Kile, B. M., Wightman, R. M., Greenough, W. T. & Sweedler, J. V., Apr 21 2010, In : ACS Chemical Neuroscience. 1, 4, p. 306-314 9 p.Research output: Contribution to journal › Article
Fragile X Mental Retardation Protein
Neuropeptides
Intellectual Disability
Fragile X Syndrome
Messenger RNA
Preface
Rubakhin, S. & Sweedler, J. V., Dec 1 2010, In : Methods in Molecular Biology. 656Research output: Contribution to journal › Article
Production of nitric oxide within the aplysia californica nervous system
Ye, X., Xie, F., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Mar 17 2010, In : ACS Chemical Neuroscience. 1, 3, p. 182-193 12 p.Research output: Contribution to journal › Article
Aplysia
Neurology
Nervous System
Nitric Oxide
Fluorescence
Quantitative neuroproteomics of the synapse.
Ramos-Ortolaza, D. L., Bushlin, I., Abul-Husn, N., Annangudi, S. P., Sweedler, J. V. & Devi, L. A., 2010, In : Methods in molecular biology (Clifton, N.J.). 615, p. 227-246 20 p.Research output: Contribution to journal › Article
Proteomics
Synapses
Neurodegenerative Diseases
Proteins
Brain
Serotonin and its metabolism in basal deuterostomes: Insights from Strongylocentrotus purpuratus and Xenoturbella bocki
Squires, L. N., Rubakhin, S. S., Wadhams, A. A., Talbot, K. N., Nakano, H., Moroz, L. L. & Sweedler, J. V., Aug 1 2010, In : Journal of Experimental Biology. 213, 15, p. 2647-2654 8 p.Research output: Contribution to journal › Article
Strongylocentrotus purpuratus
basal metabolism
Basal Metabolism
Strongylocentrotus
serotonin
Single-Cell Mass Spectrometry
Knolhoff, A. M., Rubakhin, S. & Sweedler, J. V., Mar 19 2010, Chemical Cytometry: Ultrasensitive Analysis of Single Cells. Wiley-VCH, p. 197-218 22 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Single-Cell Analysis
Aplysia
Drosophila melanogaster
Mass spectrometry
Mass Spectrometry
Spatial correlation of confocal raman scattering and secondary ion mass spectrometric molecular images of lignocellulosic materials
Li, Z., Chu, L. Q., Sweedler, J. V. & Bohn, P. W., Apr 1 2010, In : Analytical chemistry. 82, 7, p. 2608-2611 4 p.Research output: Contribution to journal › Article
Molecular mass
Secondary ion mass spectrometry
Raman scattering
Ions
Biofuels
Synthesis, accumulation, and release of d-aspartate in the Aplysia californica CNS
Scanlan, C., Shi, T., Hatcher, N. G., Rubakhin, S. & Sweedler, J. V., Dec 1 2010, In : Journal of Neurochemistry. 115, 5, p. 1234-1244 11 p.Research output: Contribution to journal › Article
Aplysia
Aspartic Acid
Ganglia
Neurons
Tissue
The genome of a songbird
Warren, W. C., Clayton, D. F., Ellegren, H., Arnold, A. P., Hillier, L. W., Künstner, A., Searle, S., White, S., Vilella, A. J., Fairley, S., Heger, A., Kong, L., Ponting, C. P., Jarvis, E. D., Mello, C. V., Minx, P., Lovell, P., Velho, T. A. F., Ferris, M., Balakrishnan, C. N. & 62 others, , Apr 1 2010, In : Nature. 464, 7289, p. 757-762 6 p.Research output: Contribution to journal › Article
Finches
Songbirds
Equidae
Genome
Molecular Evolution
The zebra finch neuropeptidome: Prediction, detection and expression
Xie, F., London, S. E., Southey, B. R., Annangudi, S. P., Amare, A., Rodriguez-Zas, S. L., Clayton, D. F. & Sweedler, J. V., Apr 1 2010, In : BMC biology. 8, 28.Research output: Contribution to journal › Article
Finches
Taeniopygia guttata
Equidae
peptide
learning
Transcriptional Orchestration of the Regulated Secretory Pathway in Neurons by the bHLH protein DIMM
Hamanaka, Y., Park, D., Yin, P., Annangudi, S. P., Edwards, T. N., Sweedler, J. V., Meinertzhagen, I. A. & Taghert, P. H., Jan 12 2010, In : Current Biology. 20, 1, p. 9-18 10 p.Research output: Contribution to journal › Article
Secretory Pathway
neuropeptides
Neuropeptides
Neurons
photoreceptors
2011
A diverse family of novel peptide toxins from an unusual cone snail, Conus californicus
Gilly, W. F., Richmond, T. A., Duda, T. F., Elliger, C., Lebaric, Z., Schulz, J., Bingham, J. P. & Sweedler, J. V., Jan 1 2011, In : Journal of Experimental Biology. 214, 1, p. 147-161 15 p.Research output: Contribution to journal › Article
Conus Snail
seed cones
peptide
snail
toxin
A novel pyridoxal 5'-phosphate-dependent amino acid racemase in the aplysia californica central nervous system
Wang, L., Ota, N., Romanova, E. V. & Sweedler, J. V., Apr 15 2011, In : Journal of Biological Chemistry. 286, 15, p. 13765-13774 10 p.Research output: Contribution to journal › Article
aspartate racemase
Amino Acid Isomerases
D-Aspartic Acid
Aplysia
Pyridoxal Phosphate
Chronic morphine alters the presynaptic protein profile: Identification of novel molecular targets using proteomics and network analysis
Abul-Husn, N. S., Annangudi, S. P., Ma'ayan, A., Ramos-Ortolaza, D. L., Stockton, S. D., Gomes, I., Sweedler, J. V. & Devi, L. A., Oct 17 2011, In : PloS one. 6, 10, e25535.Research output: Contribution to journal › Article
morphine
Electric network analysis
Proteomics
proteomics
Morphine
Collection of peptides released from single neurons with particle-embedded monolithic capillaries followed by detection with matrix-assisted laser desorption/ionization mass spectrometry
Fan, Y., Rubakhin, S. & Sweedler, J. V., Dec 15 2011, In : Analytical chemistry. 83, 24, p. 9557-9563 7 p.Research output: Contribution to journal › Article
ethylenediamine
Neurons
Ionization
Mass spectrometry
Pyrrolidinones
Comparison of tandem mass spectrometry search methods to identify neuropeptides
Akhtar, M. N., Southey, B. R., Porter, K. I., Sweedler, J. V. & Rodriguez-Zas, S. L., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 982-984 3 p. 6112530. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Tandem Mass Spectrometry
Neuropeptides
Mass spectrometry
Peptides
Amino acids
Direct cellular peptidomics of hypothalamic neurons
Mitchell, J. W., Atkins, N., Sweedler, J. V. & Gillette, M. L., Oct 1 2011, In : Frontiers in Neuroendocrinology. 32, 4, p. 377-386 10 p.Research output: Contribution to journal › Review article
Neurons
Peptides
Cell signaling
Supraoptic Nucleus
Suprachiasmatic Nucleus
Distinguishing endogenous d-amino acid-containing neuropeptides in individual neurons using tandem mass spectrometry
Bai, L., Romanova, E. V. & Sweedler, J. V., Apr 1 2011, In : Analytical chemistry. 83, 7, p. 2794-2800 7 p.Research output: Contribution to journal › Article
Neuropeptides
Neurons
Mass spectrometry
Amino Acids
Peptides
Diversity of conotoxin types from Conus californicus reflects a diversity of prey types and a novel evolutionary history
Elliger, C. A., Richmond, T. A., Lebaric, Z. N., Pierce, N. T., Sweedler, J. V. & Gilly, W. F., Feb 1 2011, In : Toxicon. 57, 2, p. 311-322 12 p.Research output: Contribution to journal › Article
Conotoxins
History
Peptides
Complementary DNA
Molluscs
Integration of sequence and functional information to identify and annotate neuropeptides in the pig genome
Porter, K. I., Southey, B. R., Akhtar, M. N., Sweedler, J. V. & Rodriguez-Zas, S. L., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 988-990 3 p. 6112532. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Neuropeptides
Swine
Genes
Genome
Proprotein Convertases
MALDI mass spectrometry imaging of neuronal cell cultures
Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., May 1 2011, In : Journal of the American Society for Mass Spectrometry. 22, 5, p. 828-836 9 p.Research output: Contribution to journal › Article
Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
Cell culture
Mass spectrometry
Aplysia
Mass Spectrometry
Metabolic differentiation of neuronal phenotypes by single-cell capillary electrophoresis-electrospray ionization-mass spectrometry
Nemes, P., Knolhoff, A. M., Rubakhin, S. & Sweedler, J. V., Sep 1 2011, In : Analytical chemistry. 83, 17, p. 6810-6817 8 p.Research output: Contribution to journal › Article
Capillary electrophoresis
Electrospray ionization
Neurons
Mass spectrometry
Neurology
Mice deficient in endothelin-converting enzyme-2 exhibit abnormal responses to morphine and altered peptide levels in the spinal cord
Miller, L. K., Hou, X., Rodriguiz, R. M., Gagnidze, K., Sweedler, J. V., Wetsel, W. C. & Devi, L. A., Dec 1 2011, In : Journal of Neurochemistry. 119, 5, p. 1074-1085 12 p.Research output: Contribution to journal › Article
Endothelins
Morphine
Spinal Cord
Peptides
Enzymes
Model of ion intensity from tandem mass spectra for improved peptide identification and simulation
Fazal, Z., Southey, B. R., Sadeque, A., Sweedler, J. V. & Rodriguez-Zas, S. L., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 994-996 3 p. 6112534. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Peptides
Ions
Mass spectrometry
Tandem Mass Spectrometry
Protons
Molecular organization of drosophila neuroendocrine cells by dimmed
Park, D., Hadžić, T., Yin, P., Rusch, J., Abruzzi, K., Rosbash, M., Skeath, J. B., Panda, S., Sweedler, J. V. & Taghert, P. H., Sep 27 2011, In : Current Biology. 21, 18, p. 1515-1524 10 p.Research output: Contribution to journal › Article
Neuroendocrine Cells
Drosophila
Secretory Vesicles
Assays
Proteins
Neuropeptidomics: Mass spectrometry-based qualitative and quantitative analysis
Yin, P., Hou, X., Romanova, E. V. & Sweedler, J. V., Oct 24 2011, Neuropeptides: Methods and Protocols. Merighi, A. (ed.). p. 223-236 14 p. (Methods in Molecular Biology; vol. 789).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Neuropeptides
Mass Spectrometry
Liquid Chromatography
Peptides
Protein Precursors
Neuropeptidomics
Sweedler, J. V., Xie, F. & Bora, A., Sep 23 2011, Protein and Peptide Mass Spectrometry in Drug Discovery. John Wiley and Sons, p. 393-433 41 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Neuropeptidomics of the mammalian brain
Xie, F., Romanova, E. V. & Sweedler, J. V., Jun 3 2011, Neuroproteomics. Li, K. W. (ed.). p. 229-242 14 p. (Neuromethods; vol. 57).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Brain
Peptides
Mass spectrometry
Mass Spectrometry
Liquid chromatography
Probing the production of amidated peptides following genetic and dietary copper manipulations
Yin, P., Bousquet-Moore, D., Annangudi, S. P., Southey, B. R., Mains, R. E., Eipper, B. A. & Sweedler, J. V., Dec 16 2011, In : PloS one. 6, 12, e28679.Research output: Contribution to journal › Article
Mixed Function Oxygenases
Copper
copper
peptides
Peptides
Profiling metabolites and peptides in single cells
Rubakhin, S., Romanova, E. V., Nemes, P. & Sweedler, J. V., Apr 2011, In : Nature Methods. 8, 4, p. S20-S29Research output: Contribution to journal › Article
Metabolites
Cytology
Peptides
Stem cells
Chemical analysis