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2014

Three-dimensionally printed biological machines powered by skeletal muscle

Cvetkovic, C., Raman, R., Chan, V., Williams, B. J., Tolish, M., Bajaj, P., Sakar, M. S., Asada, H. H., Saif, M. T. A. & Bashir, R., Jul 15 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 28, p. 10125-10130 6 p.

Research output: Contribution to journalArticle

Skeletal Muscle
Hydrogel
Locomotion
Electric Power Supplies
Biomimetics

Utilization and control of bioactuators across multiple length scales

Chan, V., Asada, H. H. & Bashir, R., Feb 21 2014, In : Lab on a chip. 14, 4, p. 653-670 18 p.

Research output: Contribution to journalReview article

Tissue
Muscle
Cells
Protozoa
Kinesin
2015

A semiconductor bio-electrical platform with addressable thermal control circuits for accelerated bioassay development

Chen, T. T., Wen, C. H., Huang, J. C., Peng, Y. C., Liu, S., Su, S. H., Cheng, L. H., Lai, H. C., Liao, T. C., Lai, F. L., Cheng, C. W., Yang, C. K., Yang, J. H., Hsieh, Y. J., Salm, E., Reddy, B., Tsui, F., Liu, Y. S., Bashir, R. & Chen, M., Feb 20 2015, In : Technical Digest - International Electron Devices Meeting, IEDM. 2015-February, February, p. 15.4.1-15.4.4 7047058.

Research output: Contribution to journalConference article

bioassay
Bioassay
platforms
Pixels
pixels

Biodegradable thin metal foils and spin-on glass materials for transient electronics

Kang, S. K., Hwang, S. W., Yu, S., Seo, J. H., Corbin, E. A., Shin, J., Wie, D. S., Bashir, R., Ma, Z. & Rogers, J. A., Mar 25 2015, In : Advanced Functional Materials. 25, 12, p. 1789-1797 9 p.

Research output: Contribution to journalArticle

metal foils
Metal foil
Electronic equipment
Glass
encapsulating

Biophysical properties of human breast cancer cells measured using silicon MEMS resonators and atomic force microscopy

Corbin, E. A., Kong, F., Lim, C. T., King, W. P. & Bashir, R., Feb 7 2015, In : Lab on a chip. 15, 3, p. 839-847 9 p.

Research output: Contribution to journalArticle

Micro-Electrical-Mechanical Systems
Atomic Force Microscopy
Silicon
MEMS
Resonators

Electronic desalting for controlling the ionic environment in droplet-based biosensing platforms

Swaminathan, V. V., Dak, P., Reddy, B., Salm, E., Duarte-Guevara, C., Zhong, Y., Fischer, A., Liu, Y. S., Alam, M. A. & Bashir, R., Feb 2 2015, In : Applied Physics Letters. 106, 5, 053105.

Research output: Contribution to journalArticle

platforms
salts
electronics
platinum black
electrodes

Engineering as a new frontier for translational medicine

Chien, S., Bashir, R., Nerem, R. M. & Pettigrew, R., Apr 1 2015, In : Science Translational Medicine. 7, 281, 281fs13.

Research output: Contribution to journalArticle

Translational Medical Research
Medicine
Delivery of Health Care
Therapeutics

Enhanced sub-micron colloidal particle separation with interdigitated microelectrode arrays using mixed AC/DC dielectrophoretic scheme

Swaminathan, V. V., Shannon, M. A. & Bashir, R., Jan 1 2015, In : Biomedical microdevices. 17, 2

Research output: Contribution to journalArticle

Microelectrodes
Electrodes
DNA Viruses
Colloids
Static Electricity

Fabrication and characterization of optogenetic, multi-strip cardiac muscles

Chan, V., Neal, D. M., Uzel, S. G. M., Kim, H., Bashir, R. & Asada, H. H., May 21 2015, In : Lab on a chip. 15, 10, p. 2258-2268 11 p.

Research output: Contribution to journalArticle

Optogenetics
Muscle
Myocardium
Fabrication
Tissue engineering

Glacier moraine formation-mimicking colloidal particle assembly in microchanneled, bioactive hydrogel for guided vascular network construction

Lee, M. K., Rich, M. H., Shkumatov, A., Jeong, J. H., Boppart, M. D., Bashir, R., Gillette, M. U., Lee, J. & Kong, H., Jan 1 2015, In : Advanced Healthcare Materials. 4, 2, p. 195-201 7 p.

Research output: Contribution to journalArticle

Ice Cover
Glaciers
Hydrogel
Microchannels
Hydrogels

Graphene-Based Platform for Infrared Near-Field Nanospectroscopy of Water and Biological Materials in an Aqueous Environment

Khatib, O., Wood, J. D., McLeod, A. S., Goldflam, M. D., Wagner, M., Damhorst, G. L., Koepke, J. C., Doidge, G. P., Rangarajan, A., Bashir, R., Pop, E., Lyding, J. W., Thiemens, M. H., Keilmann, F. & Basov, D. N., Aug 25 2015, In : ACS Nano. 9, 8, p. 7968-7975 8 p.

Research output: Contribution to journalArticle

Graphite
Biological materials
Graphene
near fields
graphene

Mechanical Characterization and Shape Optimization of Fascicle-Like 3D Skeletal Muscle Tissues Contracted with Electrical and Optical Stimuli

Neal, D., Sakar, M. S., Bashir, R., Chan, V. & Asada, H. H., Jun 1 2015, In : Tissue Engineering - Part A. 21, 11-12, p. 1848-1858 11 p.

Research output: Contribution to journalArticle

Shape optimization
Muscle
Skeletal Muscle
Tissue
Muscles

Microfluidics and Nanotechnology for Detection of Global Infectious Diseases

Damhorst, G. L., Murtagh, M., Rodriguez, W. R. & Bashir, R., Feb 1 2015, In : Proceedings of the IEEE. 103, 2, p. 150-160 11 p., 7067024.

Research output: Contribution to journalReview article

Nanotechnology
Microfluidics
Viruses
Pathogens
Industry

Nanopore-based assay for detection of methylation in double-stranded DNA fragments

Shim, J., Kim, Y., Humphreys, G. I., Nardulli, A. M., Kosari, F., Vasmatzis, G., Taylor, W. R., Ahlquist, D. A., Myong, S. & Bashir, R., Jan 27 2015, In : ACS Nano. 9, 1, p. 290-300 11 p.

Research output: Contribution to journalArticle

methylation
Methylation
Nanopores
Assays
DNA

On-chip metal/polypyrrole quasi-reference electrodes for robust ISFET operation

Duarte-Guevara, C., Swaminathan, V. V., Burgess, M., Reddy, B., Salm, E., Liu, Y. S., Rodriguez-Lopez, J. & Bashir, R., May 21 2015, In : Analyst. 140, 10, p. 3630-3641 12 p.

Research output: Contribution to journalArticle

Ion sensitive field effect transistors
Ion-Selective Electrodes
Polypyrroles
Electrodes
electrode

Optomechanical measurement of the stiffness of single adherent cells

Park, K., Mehrnezhad, A., Corbin, E. A. & Bashir, R., Jul 14 2015, In : Lab on a chip. 15, 17, p. 3460-3464 5 p.

Research output: Contribution to journalArticle

Stiffness
Mechanical properties
Substrates
Phase shift
Throughput

Photopatterning of hydrogel scaffolds coupled to filter materials using stereolithography for perfused 3D culture of hepatocytes

Neiman, J. A. S., Raman, R., Chan, V., Rhoads, M. G., Raredon, M. S. B., Velazquez, J. J., Dyer, R. L., Bashir, R., Hammond, P. T. & Griffith, L. G., Apr 1 2015, In : Biotechnology and bioengineering. 112, 4, p. 777-787 11 p.

Research output: Contribution to journalArticle

Stereolithography
Hydrogel
Hydrogels
Scaffolds
Hepatocytes

Slowing DNA transport using graphene-DNA interactions

Banerjee, S., Wilson, J., Shim, J., Shankla, M., Corbin, E. A., Aksimentiev, A. & Bashir, R., Feb 11 2015, In : Advanced Functional Materials. 25, 6, p. 936-946 11 p.

Research output: Contribution to journalArticle

Graphite
Graphene
graphene
Nanopores
interactions

Smartphone-Imaged HIV-1 Reverse-Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) on a Chip from Whole Blood

Damhorst, G. L., Duarte-Guevara, C., Chen, W., Ghonge, T., Cunningham, B. T. & Bashir, R., Sep 1 2015, In : Engineering. 1, 3, p. 324-335 12 p.

Research output: Contribution to journalArticle

Smartphones
Transcription
Viruses
Amplification
Blood

Stereolithographic 3D bioprinting for biomedical applications

Raman, R. & Bashir, R., Aug 7 2015, Essentials of 3D Biofabrication and Translation. Elsevier Inc., p. 89-121 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Bioprinting
Technology
Stereolithography
Medical applications
Biomedical Technology

Tip-based nanofabrication of arbitrary shapes of graphene nanoribbons for device applications

Hu, H., Banerjee, S., Estrada, D., Bashir, R. & King, W. P., Jan 1 2015, In : RSC Advances. 5, 46, p. 37006-37012 7 p.

Research output: Contribution to journalArticle

Nanoribbons
Carbon Nanotubes
Graphite
Nanotechnology
Graphene
2016

3D printing enables separation of orthogonal functions within a hydrogel particle

Raman, R., Clay, N. E., Sen, S., Melhem, M., Qin, E., Kong, H. & Bashir, R., Jan 1 2016, In : Biomedical microdevices. 18, 3, 49.

Research output: Contribution to journalArticle

Orthogonal functions
Hydrogel
Bovine Serum Albumin
Hydrogels
Particles (particulate matter)

Biaxial Dielectrophoresis Force Spectroscopy: A Stoichiometric Approach for Examining Intermolecular Weak Binding Interactions

Park, I. S., Kwak, T. J., Lee, G., Son, M., Choi, J. W., Choi, S., Nam, K., Lee, S. Y., Chang, W. J., Eom, K., Yoon, D. S., Lee, S., Bashir, R. & Lee, S. W., Apr 26 2016, In : ACS Nano. 10, 4, p. 4011-4019 9 p.

Research output: Contribution to journalArticle

Electrophoresis
Spectroscopy
loading rate
pulling
spectroscopy

Design and integration of a problem-based biofabrication course into an undergraduate biomedical engineering curriculum

Raman, R., Mitchell, M., Perez-Pinera, P., Bashir, R. & DeStefano, L., Sep 21 2016, In : Journal of Biological Engineering. 10, 1, 10.

Research output: Contribution to journalArticle

Biomedical Engineering
Biomedical engineering
Curriculum
Curricula
Students

Detection of silver ions using dielectrophoretic tweezers-based force spectroscopy

Choi, S., Lee, G., Park, I. S., Son, M., Kim, W., Lee, H., Lee, S. Y., Na, S., Yoon, D. S., Bashir, R., Park, J. & Lee, S. W., Jan 1 2016, In : Analytical chemistry. 88, 22, p. 10867-10875 9 p.

Research output: Contribution to journalArticle

Polynucleotides
Silver
Spectroscopy
Ions
Heavy Metals

Direct characterization of hydrodynamic loading on a microelectromechanical systems microstructure

Mehrnezhad, A., Bashir, R. & Park, K., Mar 14 2016, In : Applied Physics Letters. 108, 11, 114101.

Research output: Contribution to journalArticle

microelectromechanical systems
hydrodynamics
microstructure
viscous fluids
resonators

Droplet-based biosensing for lab-on-a-chip, open microfluidics platforms

Dak, P., Ebrahimi, A., Swaminathan, V., Duarte-Guevara, C., Bashir, R. & Alam, M. A., Jan 1 2016, In : Biosensors. 6, 2, 14.

Research output: Contribution to journalReview article

Lab-on-a-chip
Microfluidics
Biosensing Techniques
Biosensors
Costs and Cost Analysis

Dynamic mechanical measurement of the viscoelasticity of single adherent cells

Corbin, E. A., Adeniba, O. O., Ewoldt, R. H. & Bashir, R., Feb 29 2016, In : Applied Physics Letters. 108, 9, 093701.

Research output: Contribution to journalArticle

mechanical measurement
viscoelasticity
cells
sensors
microelectromechanical systems

Electrical Chips for Biological Point-of-Care Detection

Reddy, B., Salm, E. & Bashir, R., Jul 11 2016, In : Annual Review of Biomedical Engineering. 18, p. 329-355 27 p.

Research output: Contribution to journalReview article

Point-of-Care Systems
Biochips
Lab-on-a-chip
Multiplexing
Health care

High-Resolution Projection Microstereolithography for Patterning of Neovasculature

Raman, R., Bhaduri, B., Mir, M., Shkumatov, A., Lee, M. K., Popescu, G., Kong, H. & Bashir, R., Mar 9 2016, In : Advanced Healthcare Materials. 5, 5, p. 610-619 10 p.

Research output: Contribution to journalArticle

Stereolithography
Tissue engineering
Assays
Tissue
Fabrication

HIV-1 IIIB capture from whole blood on magnetic microparticles

Damhorst, G. L., Kooiman, J. M. & Bashir, R., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., p. 5785-5788 4 p. 7592042. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2016-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Antibodies
HIV-1
Blood
HIV
Proteins

Magnetophoretic-based microfluidic device for DNA Concentration

Shim, S., Shim, J., Taylor, W. R., Kosari, F., Vasmatzis, G., Ahlquist, D. A. & Bashir, R., Apr 1 2016, In : Biomedical microdevices. 18, 2, p. 1-8 8 p., 28.

Research output: Contribution to journalArticle

Lab-On-A-Chip Devices
Microfluidics
DNA
Nanofluidics
Nucleic acids

Microcantilevers track single-cell mass

Bashir, R., Nov 8 2016, In : Nature Biotechnology. 34, 11, p. 1125-11260 10136 p.

Research output: Contribution to journalShort survey

Microscopic examination
Animals

Microfluidic differential immunocapture biochip for specific leukocyte counting

Hassan, U., Watkins, N. N., Reddy, B., Damhorst, G. & Bashir, R., Apr 1 2016, In : Nature Protocols. 11, 4, p. 714-726 13 p.

Research output: Contribution to journalArticle

Biochips
Microfluidics
Biosensors
Leukocytes
Biosensing Techniques

Modeling and Analysis of Intercalant Effects on Circular DNA Conformation

Krueger, E., Shim, J., Fathizadeh, A., Chang, A. N., Subei, B., Yocham, K. M., Davis, P. H., Graugnard, E., Khalili-Araghi, F., Bashir, R., Estrada, D. & Fologea, D., Sep 27 2016, In : ACS Nano. 10, 9, p. 8910-8917 8 p.

Research output: Contribution to journalArticle

Circular DNA
Conformations
DNA
deoxyribonucleic acid
Nanopores

On-chip electrical detection of parallel loop-mediated isothermal amplification with DG-BioFETs for the detection of foodborne bacterial pathogens

Duarte-Guevara, C., Swaminathan, V. V., Reddy, B., Huang, J. C., Liu, Y. S. & Bashir, R., Jan 1 2016, In : RSC Advances. 6, 106, p. 103872-103887 16 p.

Research output: Contribution to journalArticle

Pathogens
Amplification
Gold
Assays
Nucleic acids

On-chip PMA labeling of foodborne pathogenic bacteria for viable qPCR and qLAMP detection

Duarte-Guevara, P., Duarte-Guevara, C., Ornob, A. & Bashir, R., Aug 1 2016, In : Microfluidics and Nanofluidics. 20, 8, 114.

Research output: Contribution to journalArticle

Labeling
bacteria
marking
Bacteria
Microfluidics

Optogenetic skeletal muscle-powered adaptive biological machines

Raman, R., Cvetkovic, C., Uzel, S. G. M., Platt, R. J., Sengupta, P., Kamm, R. D. & Bashir, R., Mar 29 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 13, p. 3497-3502 6 p.

Research output: Contribution to journalArticle

Optogenetics
Bioengineering
Locomotion
Skeleton
Skeletal Muscle
2017

3D Printed Stem-Cell-Laden, Microchanneled Hydrogel Patch for the Enhanced Release of Cell-Secreting Factors and Treatment of Myocardial Infarctions

Melhem, M. R., Park, J., Knapp, L., Reinkensmeyer, L., Cvetkovic, C., Flewellyn, J., Lee, M. K., Jensen, T. W., Bashir, R., Kong, H. & Schook, L. B., Sep 11 2017, In : ACS Biomaterials Science and Engineering. 3, 9, p. 1980-1987 8 p.

Research output: Contribution to journalArticle

Hydrogel
Stem cells
Hydrogels
Microchannels
Gels

A modular approach to the design, fabrication, and characterization of muscle-powered biological machines

Raman, R., Cvetkovic, C. & Bashir, R., Mar 1 2017, In : Nature Protocols. 12, 3, p. 519-533 15 p.

Research output: Contribution to journalArticle

Skeleton
Muscle
Actuators
Fabrication
Muscles

A point-of-care microfluidic biochip for quantification of CD64 expression from whole blood for sepsis stratification

Hassan, U., Ghonge, T., Reddy, B., Patel, M., Rappleye, M., Taneja, I., Tanna, A., Healey, R., Manusry, N., Price, Z., Jensen, T., Berger, J., Hasnain, A., Flaugher, E., Liu, S., Davis, B., Kumar, J., White, K. & Bashir, R., Jul 3 2017, In : Nature communications. 8, 15949.

Research output: Contribution to journalArticle

Point-of-Care Systems
Biochips
leukocytes
Microfluidics
stratification

Biohybrid actuators for robotics: A review of devices actuated by living cells

Ricotti, L., Trimmer, B., Feinberg, A. W., Raman, R., Parker, K. K., Bashir, R., Sitti, M., Martel, S., Dario, P. & Menciassi, A., Nov 22 2017, In : Science Robotics. 2, 12, eaaq0495.

Research output: Contribution to journalReview article

Robotics
Actuator
Actuators
Cells
Molecular Motor

Biomimicry, Biofabrication, and Biohybrid Systems: The Emergence and Evolution of Biological Design

Raman, R. & Bashir, R., Oct 25 2017, In : Advanced Healthcare Materials. 6, 20, 1700496.

Research output: Contribution to journalArticle

Biological Evolution
Curriculum
History
Curricula
Systems analysis

Characterization of a 1024 × 1024 DG-BioFET platform

Duarte-Guevara, C., Swaminathan, V., Reddy, B., Wen, C. H., Huang, Y. J., Huang, J. C., Liu, Y. S. & Bashir, R., Jan 1 2017, In : Sensors and Actuators, B: Chemical. 250, p. 100-110 11 p.

Research output: Contribution to journalArticle

Field effect transistors
platforms
Amplification
field effect transistors
Drain current

Combining Biomarkers with EMR Data to Identify Patients in Different Phases of Sepsis

Taneja, I., Reddy, B., Damhorst, G., Dave Zhao, S., Hassan, U., Price, Z., Jensen, T., Ghonge, T., Patel, M., Wachspress, S., Winter, J., Rappleye, M., Smith, G., Healey, R., Ajmal, M., Khan, M., Patel, J., Rawal, H., Sarwar, R., Soni, S. & 6 others, Anwaruddin, S., Davis, B., Kumar, J., White, K., Bashir, R. & Zhu, R., Dec 1 2017, In : Scientific reports. 7, 1, 10800.

Research output: Contribution to journalArticle

Electronic Health Records
Sepsis
Biomarkers
Area Under Curve
Interleukin 1 Receptor Antagonist Protein

Damage, Healing, and Remodeling in Optogenetic Skeletal Muscle Bioactuators

Raman, R., Grant, L., Seo, Y., Cvetkovic, C., Gapinske, M., Palasz, A., Dabbous, H., Kong, H., Pinera, P. P. & Bashir, R., Jun 21 2017, In : Advanced Healthcare Materials. 6, 12, 1700030.

Research output: Contribution to journalArticle

Optogenetics
Muscle
Skeletal Muscle
Technology
Psychological Adaptation
Curricula
Education
Teaching
Students
Bioengineering

Detection of methylation on dsDNA using nanopores in a MoS2 membrane

Shim, J., Banerjee, S., Qiu, H., Smithe, K. K. H., Estrada, D., Bello, J., Pop, E., Schulten, K. & Bashir, R., Oct 31 2017, In : Nanoscale. 9, 39, p. 14836-14845 10 p.

Research output: Contribution to journalArticle

Methylation
Nanopores
Membranes
Cytosine Nucleotides
DNA

Evidence of differential mass change rates between human breast cancer cell lines in culture

Corbin, E. A., Adeniba, O. O., Cangellaris, O. V., King, W. P. & Bashir, R., Mar 1 2017, In : Biomedical microdevices. 19, 1, 10.

Research output: Contribution to journalArticle

Cell culture
Cells
Breast Neoplasms
Cell Line
Growth

Hands-free smartphone-based diagnostics for simultaneous detection of Zika, Chikungunya, and Dengue at point-of-care

Ganguli, A., Ornob, A., Yu, H., Damhorst, G. L., Chen, W., Sun, F., Bhuiya, A., Cunningham, B. T. & Bashir, R., Dec 1 2017, In : Biomedical microdevices. 19, 4, 73.

Research output: Contribution to journalArticle

Point-of-Care Systems
Dengue
Smartphones
Blood
Hand