Research Output 2000 2017

2017

Bioethanol production from cellulosic hydrolysates by engineered industrial Saccharomyces cerevisiae

Lee, Y. G., Jin, Y. S., Cha, Y. L. & Seo, J. H. Mar 1 2017 In : Bioresource Technology. 228, p. 355-361 7 p.

Research output: Contribution to journalArticle

polyploidy
yeast
ethanol
Yeast
biofuel

Characterization of a Clostridium beijerinckii spo0A mutant and its application for butyl butyrate production

Seo, S. O., Wang, Y., Lu, T., Jin, Y. S. & Blaschek, H. P. Jan 1 2017 In : Biotechnology and Bioengineering. 114, 1, p. 106-112 7 p.

Research output: Contribution to journalArticle

Butenes
Fermentation
Clostridium beijerinckii
Butyrates
Clostridium

Enhanced ethanol fermentation by engineered Saccharomyces cerevisiae strains with high spermidine contents

Kim, S. K., Jo, J. H., Jin, Y. S. & Seo, J. H. Jan 24 2017 In : Bioprocess and Biosystems Engineering. p. 1-9 9 p.

Research output: Contribution to journalArticle

Spermidine
Fermentation
Saccharomyces cerevisiae
Ethanol
Yeast

Enhanced xylose fermentation by engineered yeast expressing NADH oxidase through high cell density inoculums

Zhang, G. C., Turner, T. L. & Jin, Y. S. Mar 1 2017 In : Journal of Industrial Microbiology and Biotechnology. 44, 3, p. 387-395 9 p.

Research output: Contribution to journalArticle

Xylose
NAD
Fermentation
Oxidoreductases
Cell Count
Cellobiose
Fermentation
Saccharomyces cerevisiae
Ethanol
beta-Glucosidase

Recycling Carbon Dioxide during Xylose Fermentation by Engineered Saccharomyces cerevisiae

Xia, P. F., Zhang, G. C., Walker, B., Seo, S. O., Kwak, S., Liu, J. J., Kim, H., Ort, D. R., Wang, S. G. & Jin, Y. S. Feb 17 2017 In : ACS Synthetic Biology. 6, 2, p. 276-283 8 p.

Research output: Contribution to journalArticle

Xylose
Recycling
Carbon Dioxide
Fermentation
Saccharomyces cerevisiae

Short communication: Conversion of lactose and whey into lactic acid by engineered yeast

Turner, T. L., Kim, E., Hwang, C. H., Zhang, G. C., Liu, J. J. & Jin, Y. S. Jan 1 2017 In : Journal of Dairy Science. 100, 1, p. 124-128 5 p.

Research output: Contribution to journalArticle

Lactose
Lactic Acid
Yeasts
Saccharomyces cerevisiae
Fermentation
2016

Bacterial Genome Editing with CRISPR-Cas9: Deletion, Integration, Single Nucleotide Modification, and Desirable "clean" Mutant Selection in Clostridium beijerinckii as an Example

Wang, Y., Zhang, Z. T., Seo, S. O., Lynn, P., Lu, T., Jin, Y. S. & Blaschek, H. P. Jul 15 2016 In : ACS Synthetic Biology. 5, 7, p. 721-732 12 p.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Bacterial Genomes
Genome
Genes
Plasmids

Comparison of xylose fermentation by two high-performance engineered strains of Saccharomyces cerevisiae

Li, X., Park, A., Estrela, R., Kim, S. R., Jin, Y. S. & Cate, J. H. D. Mar 1 2016 In : Biotechnology Reports. 9, p. 53-56 4 p.

Research output: Contribution to journalArticle

Xylose
Fermentation
Saccharomyces cerevisiae
Isomerases
D-Xylulose Reductase

Enhanced production of 2,3-butanediol in pyruvate decarboxylase-deficient Saccharomyces cerevisiae through optimizing ratio of glucose/galactose

Choi, E. J., Kim, J. W., Kim, S. J., Seo, S. O., Lane, S., Park, Y. C., Jin, Y. S. & Seo, J. H. 2016 In : Biotechnology Journal.

Research output: Contribution to journalArticle

Pyruvate Decarboxylase
Butylene Glycols
Galactose
Saccharomyces cerevisiae
Glucose

Fumarate-mediated persistence of Escherichia coli against antibiotics

Kim, J. S., Cho, D. H., Heo, P., Jung, S. C., Park, M., Oh, E. J., Sung, J., Kim, P. J., Lee, S. C., Lee, D. H., Lee, S., Lee, C. H., Shin, D., Jin, Y. S. & Kweon, D. H. Apr 1 2016 In : Antimicrobial Agents and Chemotherapy. 60, 4, p. 2232-2240 9 p.

Research output: Contribution to journalArticle

Fumarates
Escherichia coli
Anti-Bacterial Agents
Succinate Dehydrogenase
Operon

Gene amplification on demand accelerates cellobiose utilization in engineered Saccharomyces cerevisiae

Oh, E. J., Skerker, J. M., Kim, S. R., Wei, N., Turner, T. L., Maurer, M. J., Arkin, A. P. & Jin, Y. S. Jun 1 2016 In : Applied and Environmental Microbiology. 82, 12, p. 3631-3639 9 p.

Research output: Contribution to journalArticle

Cellobiose
Gene Amplification
Saccharomyces cerevisiae
yeast
fermentation

Gene transcription repression in Clostridium beijerinckii using CRISPR-dCas9

Wang, Y., Zhang, Z. T., Seo, S. O., Lynn, P., Lu, T., Jin, Y. S. & Blaschek, H. P. Dec 1 2016 In : Biotechnology and Bioengineering. 113, 12, p. 2739-2743 5 p.

Research output: Contribution to journalArticle

Clostridium beijerinckii
Clustered Regularly Interspaced Short Palindromic Repeats
Genes
Transcription
Amylases

GroE chaperonins assisted functional expression of bacterial enzymes in Saccharomyces cerevisiae

Xia, P. F., Zhang, G. C., Liu, J. J., Kwak, S., Tsai, C. S., Kong, I. I., Sung, B. H., Sohn, J. H., Wang, S. G. & Jin, Y. S. Oct 1 2016 In : Biotechnology and Bioengineering. 113, 10, p. 2149-2155 7 p.

Research output: Contribution to journalArticle

Chaperonins
Isomerases
Saccharomyces cerevisiae
Enzymes
Yeast

Lactic acid production from cellobiose and xylose by engineered Saccharomyces cerevisiae

Turner, T. L., Zhang, G. C., Oh, E. J., Subramaniam, V., Adiputra, A., Subramaniam, V., Skory, C. D., Jang, J. Y., Yu, B. J., Park, I. & Jin, Y. S. May 1 2016 In : Biotechnology and Bioengineering. 113, 5, p. 1075-1083 9 p.

Research output: Contribution to journalArticle

Cellobiose
Xylose
Saccharomyces cerevisiae
Lactic Acid
Lactic acid

Lactose fermentation by engineered Saccharomyces cerevisiae capable of fermenting cellobiose

Liu, J. J., Zhang, G. C., Oh, E. J., Pathanibul, P., Turner, T. L. & Jin, Y. S. Sep 20 2016 In : Journal of Biotechnology. 234, p. 99-104 6 p.

Research output: Contribution to journalArticle

Cellobiose
Lactose
Fermentation
Saccharomyces cerevisiae
Metabolic Engineering

Metabolic engineering of a haploid strain derived from a triploid industrial yeast for producing cellulosic ethanol

Kim, S. R., Skerker, J. M., Kong, I. I., Kim, H., Maurer, M. J., Zhang, G. C., Peng, D., Wei, N., Arkin, A. P. & Jin, Y. S. Oct 28 2016 In : Metabolic Engineering.

Research output: Contribution to journalArticle

Metabolic Engineering
Triploidy
Haploidy
Fermentation
Ethanol

Metabolic engineering of probiotic Saccharomyces boulardii

Liu, J. J., Kong, I. I., Zhang, G. C., Jayakody, L. N., Kim, H., Xia, P. F., Kwak, S., Sung, B. H., Sohn, J. H., Walukiewicz, H. E., Rao, C. V. & Jin, Y. S. Apr 1 2016 In : Applied and Environmental Microbiology. 82, 8, p. 2280-2287 8 p.

Research output: Contribution to journalArticle

Metabolic Engineering
Saccharomyces
Probiotics
Health
Proteins

Mitigating health risks associated with alcoholic beverages through metabolic engineering

Jayakody, L. N., Lane, S., Kim, H. & Jin, Y. S. Feb 1 2016 In : Current Opinion in Biotechnology. 37, p. 173-181 9 p.

Research output: Contribution to journalReview article

Metabolic Engineering
Alcoholic Beverages
Yeasts
Health
Yeast

Optimization of an acetate reduction pathway for producing cellulosic ethanol by engineered yeast

Zhang, G. C., Kong, I. I., Wei, N., Peng, D., Turner, T. L., Sung, B. H., Sohn, J. H. & Jin, Y. S. Dec 1 2016 In : Biotechnology and Bioengineering. 113, 12, p. 2587-2596 10 p.

Research output: Contribution to journalArticle

Acetates
Ethanol
Yeasts
Xylose
Yeast

Overcoming the limited availability of human milk oligosaccharides: Challenges and opportunities for research and application

Bode, L., Contractor, N., Barile, D., Pohl, N., Prudden, A. R., Boons, G. J., Jin, Y. S. & Jennewein, S. Oct 1 2016 In : Nutrition Reviews. 74, 10, p. 635-644 10 p., nuw025

Research output: Contribution to journalArticle

Human Milk
Oligosaccharides
Metabolic Engineering
Infant Welfare
Infant Formula

PHO13 deletion-induced transcriptional activation prevents sedoheptulose accumulation during xylose metabolism in engineered Saccharomyces cerevisiae

Xu, H., Kim, S., Sorek, H., Lee, Y., Jeong, D., Kim, J., Oh, E. J., Yun, E. J., Wemmer, D. E., Kim, K. H., Kim, S. R. & Jin, Y. S. Mar 1 2016 In : Metabolic Engineering. 34, p. 88-96 9 p.

Research output: Contribution to journalArticle

Xylose
Transcriptional Activation
Saccharomyces cerevisiae
Yeast
Transaldolase

Rapid and efficient galactose fermentation by engineered Saccharomyces cerevisiae

Quarterman, J., Skerker, J. M., Feng, X., Liu, I. Y., Zhao, H., Arkin, A. P. & Jin, Y. S. Jul 10 2016 In : Journal of Biotechnology. 229, p. 13-21 9 p.

Research output: Contribution to journalArticle

Galactose
Fermentation
Saccharomyces cerevisiae
Respiration
Yeasts

Recent advances in biological production of sugar alcohols

Park, Y. C., Oh, E. J., Jo, J. H., Jin, Y. S. & Seo, J. H. Feb 1 2016 In : Current Opinion in Biotechnology. 37, p. 105-113 9 p.

Research output: Contribution to journalReview article

Sugar Alcohols
Substrates
Erythritol
Catabolite Repression
Metabolic Engineering
2015

Combining C6 and C5 sugar metabolism for enhancing microbial bioconversion

Zhang, G. C., Liu, J. J., Kong, I. I., Kwak, S. & Jin, Y. S. Dec 1 2015 In : Current Opinion in Chemical Biology. 29, p. 49-57 9 p.

Research output: Contribution to journalReview article

Carbohydrates
Fermentation
Biomass
Metabolic Engineering
Saccharum

Deletion of PHO13, encoding haloacid dehalogenase type IIA phosphatase, results in upregulation of the pentose phosphate pathway in Saccharomyces cerevisiae

Kim, S. R., Xu, H., Lesmana, A., Kuzmanovic, U., Au, M., Florencia, C., Oh, E. J., Zhang, G., Kim, K. H. & Jin, Y. S. 2015 In : Applied and Environmental Microbiology. 81, 5, p. 1601-1609 9 p.

Research output: Contribution to journalArticle

Pentose Phosphate Pathway
Xylose
Phosphoric Monoester Hydrolases
Saccharomyces cerevisiae
Up-Regulation

Development and physiological characterization of cellobiose-consuming Yarrowia lipolytica

Lane, S., Zhang, S., Wei, N., Rao, C. & Jin, Y. S. May 1 2015 In : Biotechnology and Bioengineering. 112, 5, p. 1012-1022 11 p.

Research output: Contribution to journalArticle

Yarrowia
Cellobiose
Glucose
Citric Acid
Nitrogen

Effects of genetic variation and growing condition of prairie cordgrass on feedstock composition and ethanol yield

Kim, S. M., Guo, J., Kwak, S., Jin, Y. S., Lee, D. K. & Singh, V. May 1 2015 In : Bioresource Technology. 183, p. 70-77 8 p.

Research output: Contribution to journalArticle

Ethanol
Grassland
ethanol
prairie
Feedstocks

Enhanced hexose fermentation by Saccharomyces cerevisiae through integration of stoichiometric modeling and genetic screening

Quarterman, J., Kim, S. R., Kim, P. J. & Jin, Y. S. Jan 1 2015 In : Journal of Biotechnology. 194, p. 48-57 10 p.

Research output: Contribution to journalArticle

Hexoses
Genetic Testing
Fermentation
Saccharomyces cerevisiae
Ethanol

Enhanced tolerance of Saccharomyces cerevisiae to multiple lignocellulose-derived inhibitors through modulation of spermidine contents

Kim, S. K., Jin, Y. S., Choi, I. G., Park, Y. C. & Seo, J. H. May 1 2015 In : Metabolic Engineering. 29, p. 46-55 10 p.

Research output: Contribution to journalArticle

Yeast
Spermidine
Saccharomyces cerevisiae
Strain control
Biofuels

Expanding xylose metabolism in yeast for plant cell wall conversion to biofuels

Li, X., Yu, V. Y. A., Lin, Y., Chomvong, K., Estrela, R., Park, A., Liang, J. M., Znameroski, E. A., Feehan, J., Kim, S. R. I., Jin, Y. S., Glass, N. L. & Cate, J. H. D. 2015 In : eLife. 4

Research output: Contribution to journalArticle

Xylitol
Biofuels
Xylose
Plant Cells
Cell Wall

Expression of Lactococcus lactis NADH oxidase increases 2,3-butanediol production in Pdc-deficient Saccharomyces cerevisiae

Kim, J. W., Seo, S. O., Zhang, G. C., Jin, Y. S. & Seo, J. H. Jun 8 2015 In : Bioresource Technology. 191, p. 512-519 8 p.

Research output: Contribution to journalArticle

Butylene Glycols
Lactococcus lactis
NAD
Saccharomyces cerevisiae
Oxidoreductases

Integrated, systems metabolic picture of acetone-butanol-ethanol fermentation by Clostridium acetobutylicum

Liao, C., Seo, S. O., Celik, V., Liu, H., Kong, W., Wang, Y., Blaschek, H., Jin, Y. S. & Lu, T. Jul 7 2015 In : Proceedings of the National Academy of Sciences of the United States of America. 112, 27, p. 8505-8510 6 p.

Research output: Contribution to journalArticle

Clostridium acetobutylicum
Butanols
Acetone
Fermentation
Ethanol

Lactic acid production from xylose by engineered Saccharomyces cerevisiae without PDC or ADH deletion

Turner, T. L., Zhang, G. C., Kim, S. R., Subramaniam, V., Steffen, D., Skory, C. D., Jang, J. Y., Yu, B. J. & Jin, Y. S. Jun 6 2015 In : Applied Microbiology and Biotechnology. 99, 19, p. 8023-8033 11 p.

Research output: Contribution to journalArticle

Xylose
Saccharomyces cerevisiae
Lactic Acid
Glucose
Ethanol

Markerless chromosomal gene deletion in Clostridium beijerinckii using CRISPR/Cas9 system

Wang, Y., Zhang, Z. T., Seo, S. O., Choi, K., Lu, T., Jin, Y. S. & Blaschek, H. P. Apr 1 2015 In : Journal of Biotechnology. 200, p. 1-5 5 p.

Research output: Contribution to journalArticle

Clostridium beijerinckii
Clustered Regularly Interspaced Short Palindromic Repeats
Gene Deletion
Genome
Butanols

Maternal fucosyltransferase 2 status affects the gut bifidobacterial communities of breastfed infants

Lewis, Z. T., Totten, S. M., Smilowitz, J. T., Popovic, M., Parker, E., Lemay, D. G., Van Tassell, M. L., Miller, M. J., Jin, Y. S., German, J. B., Lebrilla, C. B. & Mills, D. A. Apr 10 2015 In : Microbiome. 3, 1, 13

Research output: Contribution to journalArticle

Fucosyltransferases
Bifidobacterium
Oligosaccharides
Feces
Milk

Production of (S)-3-hydroxybutyrate by metabolically engineered Saccharomyces cerevisiae

Yun, E. J., Kwak, S., Kim, S. R., Park, Y. C., Jin, Y. S. & Kim, K. H. Sep 1 2015 In : Journal of Biotechnology. 209, p. 23-30 8 p.

Research output: Contribution to journalArticle

3-Hydroxybutyric Acid
Saccharomyces cerevisiae
Coenzyme A
Ethanol
Yeasts

Rapid and marker-free refactoring of xylose-fermenting yeast strains with Cas9/CRISPR

Tsai, C. S., Kong, I. I., Lesmana, A., Million, G., Zhang, G. C., Kim, S. R. & Jin, Y. S. Nov 1 2015 In : Biotechnology and Bioengineering. 112, 11, p. 2406-2411 6 p.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Xylose
Yeasts
Genes
Yeast

Simultaneous Utilization of Cellobiose, Xylose, and Acetic Acid from Lignocellulosic Biomass for Biofuel Production by an Engineered Yeast Platform

Wei, N., Oh, E. J., Million, G., Cate, J. H. D. & Jin, Y. S. Jun 19 2015 In : ACS Synthetic Biology. 4, 6, p. 707-713 7 p.

Research output: Contribution to journalArticle

Metabolic Engineering
Cellobiose
Biofuels
Xylose
Acetic Acid

Uncovering the nutritional landscape of food

Kim, S., Sung, J., Foo, M., Jin, Y. S. & Kim, P. J. Mar 13 2015 In : PLoS One. 10, 3, e0118697

Research output: Contribution to journalArticle

Food
Nutritional Requirements

Yeast synthetic biology toolbox and applications for biofuel production

Tsai, C. S., Kwak, S., Turner, T. L. & Jin, Y. S. 2015 In : FEMS Yeast Research. 15, 1, 12206

Research output: Contribution to journalShort survey

Synthetic Biology
Biofuels
Yeasts
Biomass
Genes
2014

2,3-Butanediol production from cellobiose by engineered Saccharomyces cerevisiae

Nan, H., Seo, S. O., Oh, E. J., Seo, J. H., Cate, J. H. D. & Jin, Y. S. 2014 In : Applied Microbiology and Biotechnology. 98, 12, p. 5757-5764 8 p.

Research output: Contribution to journalArticle

Butylene Glycols
Cellobiose
Saccharomyces cerevisiae
Pyruvic Acid
Ethanol

Analysis of cellodextrin transporters from Neurospora crassa in Saccharomyces cerevisiae for cellobiose fermentation

Kim, H., Lee, W. H., Galazka, J. M., Cate, J. H. D. & Jin, Y. S. 2014 In : Applied Microbiology and Biotechnology. 98, 3, p. 1087-1094 8 p.

Research output: Contribution to journalArticle

Cellobiose
Neurospora crassa
Fermentation
Saccharomyces cerevisiae
Glucose

Construction of a quadruple auxotrophic mutant of an industrial polyploid Saccharomyces cerevisiae strain by using RNA-guided Cas9 nuclease

Zhang, G. C., Kong, I. I., Kim, H., Liu, J. J., Cate, J. H. D. & Jin, Y. S. 2014 In : Applied and Environmental Microbiology. 80, 24, p. 7694-7701 8 p.

Research output: Contribution to journalArticle

Polyploidy
Saccharomyces cerevisiae
RNA
Genes
gene
Metabolites
Cellobiose
Saccharomyces cerevisiae
Oxidative Stress
Oxidative stress

Leveraging transcription factors to speed cellobiose fermentation by Saccharomyces cerevisiae

Lin, Y., Chomvong, K., Acosta-Sampson, L., Estrela, R., Galazka, J. M., Kim, S. R., Jin, Y. S. & Cate, J. H. Aug 27 2014 In : Biotechnology for Biofuels. 7, 1, 126

Research output: Contribution to journalArticle

Cellobiose
Fermentation
Saccharomyces cerevisiae
Transcription Factors
fermentation

Molecular cloning and expression of fungal cellobiose transporters and β-glucosidases conferring efficient cellobiose fermentation in Saccharomyces cerevisiae

Bae, Y. H., Kang, K. H., Jin, Y. S. & Seo, J. H. Jan 10 2014 In : Journal of Biotechnology. 169, 1, p. 34-41 8 p.

Research output: Contribution to journalArticle

Cellobiose
Cellulases
Molecular Cloning
Fermentation
Saccharomyces cerevisiae

Overcoming inefficient cellobiose fermentation by cellobiose phosphorylase in the presence of xylose

Chomvong, K., Kordić, V., Li, X., Bauer, S., Gillespie, A. E., Ha, S. J., Oh, E. J., Galazka, J. M., Jin, Y. S. & Cate, J. H. D. Jun 7 2014 In : Biotechnology for Biofuels. 7, 1, 85

Research output: Contribution to journalArticle

fermentation
Cellobiose
Phosphorylases
Xylose
Fermentation

Production of 2,3-butanediol from xylose by engineered Saccharomyces cerevisiae

Kim, S. J., Seo, S. O., Park, Y. C., Jin, Y. S. & Seo, J. H. Dec 20 2014 In : Journal of Biotechnology. 192, p. 376-382 7 p.

Research output: Contribution to journalArticle

Butylene Glycols
Xylose
Saccharomyces cerevisiae
Genes
Pyruvate Decarboxylase