Research Output 2000 2017

2017

Bioethanol production from cellulosic hydrolysates by engineered industrial Saccharomyces cerevisiae

Lee, Y. G., Jin, Y. S., Cha, Y. L. & Seo, J. H. 2017 In : Bioresource Technology. 228, p. 355-361 7 p.

Research output: Research - peer-reviewArticle

polyploidy
yeast
ethanol
mutant
Bioethanol

Characterization of a Clostridium beijerinckii spo0A mutant and its application for butyl butyrate production

Seo, S. O., Wang, Y., Lu, T., Jin, Y. S. & Blaschek, H. P. Jan 1 2017 In : Biotechnology and Bioengineering. 114, 1, p. 106-112 7 p.

Research output: Research - peer-reviewArticle

Clostridium beijerinckii
n-butyl n-butyrate
Clostridium
Fermentation
Butyrates
ethanol
Aldehyde Reductase
Xylose
Isoenzymes
Oxidoreductases

Elimination of the cryptic plasmid in Leuconostoc citreum by CRISPR/Cas9 system

Jang, Y. J., Seo, S. O., Kim, S. A., Li, L., Kim, T. J., Kim, S. C., Jin, Y. S. & Han, N. S. Jun 10 2017 In : Journal of Biotechnology. 251, p. 151-155 5 p.

Research output: Research - peer-reviewArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Leuconostoc
Plasmids
Guide RNA
Food

Enhanced ethanol fermentation by engineered Saccharomyces cerevisiae strains with high spermidine contents

Kim, S. K., Jo, J. H., Jin, Y. S. & Seo, J. H. 2017 In : Bioprocess and Biosystems Engineering. 40, 5, p. 683-691 9 p.

Research output: Research - peer-reviewArticle

Spermidine
Fermentation
Saccharomyces cerevisiae
Ethanol
Strain control

Enhanced isoprenoid production from xylose by engineered Saccharomyces cerevisiae

Kwak, S., Kim, S. R., Xu, H., Zhang, G. C., Lane, S., Kim, H. & Jin, Y. S. Nov 1 2017 In : Biotechnology and Bioengineering. 114, 11, p. 2581-2591 11 p.

Research output: Research - peer-reviewArticle

Xylose
Terpenes
Saccharomyces cerevisiae
Ethanol
Glucose

Enhanced xylose fermentation by engineered yeast expressing NADH oxidase through high cell density inoculums

Zhang, G. C., Turner, T. L. & Jin, Y. S. Mar 1 2017 In : Journal of Industrial Microbiology and Biotechnology. 44, 3, p. 387-395 9 p.

Research output: Research - peer-reviewArticle

Xylose
Fermentation
Cell Count
Yeasts
NADH oxidase

Genomic, Transcriptional, and Phenotypic Analysis of the Glucose Derepressed Clostridium beijerinckii Mutant Exhibiting Acid Crash Phenotype

Seo, S. O., Janssen, H., Magis, A., Wang, Y., Lu, T., Price, N. D., Jin, Y. S. & Blaschek, H. P. Nov 1 2017 In : Biotechnology Journal. 12, 11, 1700182

Research output: Research - peer-reviewArticle

Clostridium beijerinckii
Phenotype
Glucose
Acids
Fermentation

Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis

Sung, J., Kim, S., Cabatbat, J. J. T., Jang, S., Jin, Y. S., Jung, G. Y., Chia, N. & Kim, P. J. Jun 6 2017 In : Nature Communications. 8, 15393

Research output: Research - peer-reviewArticle

Metabolic Networks and Pathways
Gastrointestinal Microbiome
microorganisms
interactions
Microbiota
Cellobiose
Fermentation
Saccharomyces cerevisiae
Ethanol
beta-Glucosidase

Metabolic engineering of a haploid strain derived from a triploid industrial yeast for producing cellulosic ethanol

Kim, S. R., Skerker, J. M., Kong, I. I., Kim, H., Maurer, M. J., Zhang, G. C., Peng, D., Wei, N., Arkin, A. P. & Jin, Y. S. Mar 1 2017 In : Metabolic Engineering. 40, p. 176-185 10 p.

Research output: Research - peer-reviewArticle

Metabolic Engineering
Triploidy
Haploidy
Fermentation
Ethanol

Metabolic engineering of Saccharomyces cerevisiae for production of spermidine under optimal culture conditions

Kim, S. K., Jo, J. H., Park, Y. C., Jin, Y. S. & Seo, J. H. Jun 1 2017 In : Enzyme and Microbial Technology. 101, p. 30-35 6 p.

Research output: Research - peer-reviewArticle

Metabolic Engineering
Spermidine
Saccharomyces cerevisiae
Metabolic engineering
Fermentation

Production of fuels and chemicals from xylose by engineered Saccharomyces cerevisiae: A review and perspective

Kwak, S. & Jin, Y. S. May 11 2017 In : Microbial Cell Factories. 16, 1, 82

Research output: Research - peer-reviewReview article

Xylose
Saccharomyces cerevisiae
Yeasts
Metabolism
Glucose

Recycling Carbon Dioxide during Xylose Fermentation by Engineered Saccharomyces cerevisiae

Xia, P. F., Zhang, G. C., Walker, B., Seo, S. O., Kwak, S., Liu, J. J., Kim, H., Ort, D. R., Wang, S. G. & Jin, Y. S. Feb 17 2017 In : ACS Synthetic Biology. 6, 2, p. 276-283 8 p.

Research output: Research - peer-reviewArticle

Xylose
Recycling
Carbon Dioxide
Fermentation
Saccharomyces cerevisiae

Short communication: Conversion of lactose and whey into lactic acid by engineered yeast

Turner, T. L., Kim, E., Hwang, C. H., Zhang, G. C., Liu, J. J. & Jin, Y. S. Jan 1 2017 In : Journal of Dairy Science. 100, 1, p. 124-128 5 p.

Research output: Research - peer-reviewArticle

whey
lactic acid
animal communication
lactose
yeasts

Transporter engineering for cellobiose fermentation under lower pH conditions by engineered Saccharomyces cerevisiae

Oh, E. J., Kwak, S., Kim, H. & Jin, Y. S. Apr 1 2017 (Accepted/In press) In : Bioresource Technology.

Research output: Research - peer-reviewArticle

fermentation
engineering
mutant
Cellobiose
Fermentation
2016
Clostridium beijerinckii
Clustered Regularly Interspaced Short Palindromic Repeats
Bacterial Genomes
Nucleotides
Gene Editing

Comparison of xylose fermentation by two high-performance engineered strains of Saccharomyces cerevisiae

Li, X., Park, A., Estrela, R., Kim, S. R., Jin, Y. S. & Cate, J. H. D. Mar 1 2016 In : Biotechnology Reports. 9, p. 53-56 4 p.

Research output: Research - peer-reviewArticle

xylose isomerase
Xylose
Fermentation
Saccharomyces cerevisiae
D-Xylulose Reductase

Enhanced production of 2,3-butanediol in pyruvate decarboxylase-deficient Saccharomyces cerevisiae through optimizing ratio of glucose/galactose

Choi, E. J., Kim, J. W., Kim, S. J., Seo, S. O., Lane, S., Park, Y. C., Jin, Y. S. & Seo, J. H. Nov 1 2016 In : Biotechnology Journal. 11, 11, p. 1424-1432 9 p.

Research output: Research - peer-reviewArticle

Pyruvate Decarboxylase
Galactose
Saccharomyces cerevisiae
Glucose
2,3-butylene glycol

Fumarate-mediated persistence of Escherichia coli against antibiotics

Kim, J. S., Cho, D. H., Heo, P., Jung, S. C., Park, M., Oh, E. J., Sung, J., Kim, P. J., Lee, S. C., Lee, D. H., Lee, S., Lee, C. H., Shin, D., Jin, Y. S. & Kweon, D. H. Apr 1 2016 In : Antimicrobial Agents and Chemotherapy. 60, 4, p. 2232-2240 9 p.

Research output: Research - peer-reviewArticle

Fumarates
Escherichia coli
Anti-Bacterial Agents
Succinate Dehydrogenase
Operon

Gene amplification on demand accelerates cellobiose utilization in engineered Saccharomyces cerevisiae

Oh, E. J., Skerker, J. M., Kim, S. R., Wei, N., Turner, T. L., Maurer, M. J., Arkin, A. P. & Jin, Y. S. Jun 1 2016 In : Applied and Environmental Microbiology. 82, 12, p. 3631-3639 9 p.

Research output: Research - peer-reviewArticle

yeast
amplification
gene
demand
gene amplification

Gene transcription repression in Clostridium beijerinckii using CRISPR-dCas9

Wang, Y., Zhang, Z. T., Seo, S. O., Lynn, P., Lu, T., Jin, Y. S. & Blaschek, H. P. Dec 1 2016 In : Biotechnology and Bioengineering. 113, 12, p. 2739-2743 5 p.

Research output: Research - peer-reviewArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Clostridium
Transcription
Genes
Clostridium beijerinckii

GroE chaperonins assisted functional expression of bacterial enzymes in Saccharomyces cerevisiae

Xia, P. F., Zhang, G. C., Liu, J. J., Kwak, S., Tsai, C. S., Kong, I. I., Sung, B. H., Sohn, J. H., Wang, S. G. & Jin, Y. S. Oct 1 2016 In : Biotechnology and Bioengineering. 113, 10, p. 2149-2155 7 p.

Research output: Research - peer-reviewArticle

Chaperonins
Saccharomyces cerevisiae
Enzymes
Escherichia coli
xylose isomerase

Lactic acid production from cellobiose and xylose by engineered Saccharomyces cerevisiae

Turner, T. L., Zhang, G. C., Oh, E. J., Subramaniam, V., Adiputra, A., Subramaniam, V., Skory, C. D., Jang, J. Y., Yu, B. J., Park, I. & Jin, Y. S. May 1 2016 In : Biotechnology and Bioengineering. 113, 5, p. 1075-1083 9 p.

Research output: Research - peer-reviewArticle

Cellobiose
Xylose
Saccharomyces cerevisiae
Lactic Acid
Sugars

Lactose fermentation by engineered Saccharomyces cerevisiae capable of fermenting cellobiose

Liu, J. J., Zhang, G. C., Oh, E. J., Pathanibul, P., Turner, T. L. & Jin, Y. S. Sep 20 2016 In : Journal of Biotechnology. 234, p. 99-104 6 p.

Research output: Research - peer-reviewArticle

Cellobiose
Lactose
Fermentation
Saccharomyces cerevisiae
Metabolic Engineering

Metabolic engineering of probiotic Saccharomyces boulardii

Liu, J. J., Kong, I. I., Zhang, G. C., Jayakody, L. N., Kim, H., Xia, P. F., Kwak, S., Sung, B. H., Sohn, J. H., Walukiewicz, H. E., Rao, C. V. & Jin, Y. S. Apr 1 2016 In : Applied and Environmental Microbiology. 82, 8, p. 2280-2287 8 p.

Research output: Research - peer-reviewArticle

Saccharomyces cerevisiae var. cerevisiae
metabolic engineering
probiotics
engineering
Metabolic Engineering

Mitigating health risks associated with alcoholic beverages through metabolic engineering

Jayakody, L. N., Lane, S., Kim, H. & Jin, Y. S. Feb 1 2016 In : Current Opinion in Biotechnology. 37, p. 173-181 9 p.

Research output: Research - peer-reviewReview article

Metabolic Engineering
Alcoholic Beverages
Yeasts
Health
Metabolic engineering

Optimization of an acetate reduction pathway for producing cellulosic ethanol by engineered yeast

Zhang, G. C., Kong, I. I., Wei, N., Peng, D., Turner, T. L., Sung, B. H., Sohn, J. H. & Jin, Y. S. Dec 1 2016 In : Biotechnology and Bioengineering. 113, 12, p. 2587-2596 10 p.

Research output: Research - peer-reviewArticle

Acetates
Ethanol
Yeasts
Cellulosic ethanol
Oxidoreductases

Overcoming the limited availability of human milk oligosaccharides: Challenges and opportunities for research and application

Bode, L., Contractor, N., Barile, D., Pohl, N., Prudden, A. R., Boons, G. J., Jin, Y. S. & Jennewein, S. Oct 1 2016 In : Nutrition Reviews. 74, 10, p. 635-644 10 p., nuw025

Research output: Research - peer-reviewArticle

Human Milk
Oligosaccharides
Research
Metabolic Engineering
Infant Formula

PHO13 deletion-induced transcriptional activation prevents sedoheptulose accumulation during xylose metabolism in engineered Saccharomyces cerevisiae

Xu, H., Kim, S., Sorek, H., Lee, Y., Jeong, D., Kim, J., Oh, E. J., Yun, E. J., Wemmer, D. E., Kim, K. H., Kim, S. R. & Jin, Y. S. Mar 1 2016 In : Metabolic Engineering. 34, p. 88-96 9 p.

Research output: Research - peer-reviewArticle

Xylose
Transcriptional Activation
Saccharomyces cerevisiae
sedoheptulose
Metabolism

Rapid and efficient galactose fermentation by engineered Saccharomyces cerevisiae

Quarterman, J., Skerker, J. M., Feng, X., Liu, I. Y., Zhao, H., Arkin, A. P. & Jin, Y. S. Jul 10 2016 In : Journal of Biotechnology. 229, p. 13-21 9 p.

Research output: Research - peer-reviewArticle

Galactose
Fermentation
Saccharomyces cerevisiae
Respiration
Yeasts

Recent advances in biological production of sugar alcohols

Park, Y. C., Oh, E. J., Jo, J. H., Jin, Y. S. & Seo, J. H. Feb 1 2016 In : Current Opinion in Biotechnology. 37, p. 105-113 9 p.

Research output: Research - peer-reviewReview article

Sugar Alcohols
Substrates
Erythritol
Catabolite Repression
Metabolic Engineering
2015

Combining C6 and C5 sugar metabolism for enhancing microbial bioconversion

Zhang, G. C., Liu, J. J., Kong, I. I., Kwak, S. & Jin, Y. S. Dec 1 2015 In : Current Opinion in Chemical Biology. 29, p. 49-57 9 p.

Research output: Research - peer-reviewReview article

Bioconversion
Metabolism
Sugars
Fermentation
Biomass

Deletion of PHO13, encoding haloacid dehalogenase type IIA phosphatase, results in upregulation of the pentose phosphate pathway in Saccharomyces cerevisiae

Kim, S. R., Xu, H., Lesmana, A., Kuzmanovic, U., Au, M., Florencia, C., Oh, E. J., Zhang, G., Kim, K. H. & Jin, Y. S. 2015 In : Applied and Environmental Microbiology. 81, 5, p. 1601-1609 9 p.

Research output: Research - peer-reviewArticle

Pentose Phosphate Pathway
Phosphoric Monoester Hydrolases
Saccharomyces cerevisiae
Up-Regulation
Enzymes

Development and physiological characterization of cellobiose-consuming Yarrowia lipolytica

Lane, S., Zhang, S., Wei, N., Rao, C. & Jin, Y. S. May 1 2015 In : Biotechnology and Bioengineering. 112, 5, p. 1012-1022 11 p.

Research output: Research - peer-reviewArticle

Yarrowia
Cellobiose
Glucose
Citric Acid
Nitrogen

Effects of genetic variation and growing condition of prairie cordgrass on feedstock composition and ethanol yield

Kim, S. M., Guo, J., Kwak, S., Jin, Y. S., Lee, D. K. & Singh, V. May 1 2015 In : Bioresource Technology. 183, p. 70-77 8 p.

Research output: Research - peer-reviewArticle

prairie
genetic variation
ethanol
effect
Feedstocks

Enhanced hexose fermentation by Saccharomyces cerevisiae through integration of stoichiometric modeling and genetic screening

Quarterman, J., Kim, S. R., Kim, P. J. & Jin, Y. S. Jan 1 2015 In : Journal of Biotechnology. 194, p. 48-57 10 p.

Research output: Research - peer-reviewArticle

Hexoses
Genetic Testing
Fermentation
Saccharomyces cerevisiae
Ethanol

Enhanced tolerance of Saccharomyces cerevisiae to multiple lignocellulose-derived inhibitors through modulation of spermidine contents

Kim, S. K., Jin, Y. S., Choi, I. G., Park, Y. C. & Seo, J. H. May 1 2015 In : Metabolic Engineering. 29, p. 46-55 10 p.

Research output: Research - peer-reviewArticle

Spermidine
Modulation
lignocellulose
Saccharomyces cerevisiae
Biofuels

Expanding xylose metabolism in yeast for plant cell wall conversion to biofuels

Li, X., Yu, V. Y. A., Lin, Y., Chomvong, K., Estrela, R., Park, A., Liang, J. M., Znameroski, E. A., Feehan, J., Kim, S. R. I., Jin, Y. S., Glass, N. L. & Cate, J. H. D. 2015 In : eLife. 4

Research output: Research - peer-reviewArticle

Xylitol
Biofuels
Xylose
Plant Cells
Cell Wall

Expression of Lactococcus lactis NADH oxidase increases 2,3-butanediol production in Pdc-deficient Saccharomyces cerevisiae

Kim, J. W., Seo, S. O., Zhang, G. C., Jin, Y. S. & Seo, J. H. Jun 8 2015 In : Bioresource Technology. 191, p. 512-519 8 p.

Research output: Research - peer-reviewArticle

Lactococcus lactis
Saccharomyces cerevisiae
NADH oxidase
2,3-butylene glycol
gene

Integrated, systems metabolic picture of acetone-butanol-ethanol fermentation by Clostridium acetobutylicum

Liao, C., Seo, S. O., Celik, V., Liu, H., Kong, W., Wang, Y., Blaschek, H., Jin, Y. S. & Lu, T. Jul 7 2015 In : Proceedings of the National Academy of Sciences of the United States of America. 112, 27, p. 8505-8510 6 p.

Research output: Research - peer-reviewArticle

Clostridium acetobutylicum
Butanols
Acetone
Fermentation
Ethanol

Lactic acid production from xylose by engineered Saccharomyces cerevisiae without PDC or ADH deletion

Turner, T. L., Zhang, G. C., Kim, S. R., Subramaniam, V., Steffen, D., Skory, C. D., Jang, J. Y., Yu, B. J. & Jin, Y. S. Oct 10 2015 In : Applied Microbiology and Biotechnology. 99, 19, p. 8023-8033 11 p.

Research output: Research - peer-reviewArticle

Xylose
Saccharomyces cerevisiae
Lactic Acid
Glucose
Ethanol

Markerless chromosomal gene deletion in Clostridium beijerinckii using CRISPR/Cas9 system

Wang, Y., Zhang, Z. T., Seo, S. O., Choi, K., Lu, T., Jin, Y. S. & Blaschek, H. P. Apr 1 2015 In : Journal of Biotechnology. 200, p. 1-5 5 p.

Research output: Research - peer-reviewArticle

Clostridium beijerinckii
Clustered Regularly Interspaced Short Palindromic Repeats
Gene Deletion
Genome
Butanols

Maternal fucosyltransferase 2 status affects the gut bifidobacterial communities of breastfed infants

Lewis, Z. T., Totten, S. M., Smilowitz, J. T., Popovic, M., Parker, E., Lemay, D. G., Van Tassell, M. L., Miller, M. J., Jin, Y. S., German, J. B., Lebrilla, C. B. & Mills, D. A. Apr 10 2015 In : Microbiome. 3, 1, 13

Research output: Research - peer-reviewArticle

Mothers
galactoside 2-alpha-L-fucosyltransferase
Bifidobacterium
Oligosaccharides
Feces

Production of (S)-3-hydroxybutyrate by metabolically engineered Saccharomyces cerevisiae

Yun, E. J., Kwak, S., Kim, S. R., Park, Y. C., Jin, Y. S. & Kim, K. H. Sep 1 2015 In : Journal of Biotechnology. 209, p. 23-30 8 p.

Research output: Research - peer-reviewArticle

3-Hydroxybutyric Acid
Saccharomyces cerevisiae
Ethanol
Yeasts
Carbon

Rapid and marker-free refactoring of xylose-fermenting yeast strains with Cas9/CRISPR

Tsai, C. S., Kong, I. I., Lesmana, A., Million, G., Zhang, G. C., Kim, S. R. & Jin, Y. S. Nov 1 2015 In : Biotechnology and Bioengineering. 112, 11, p. 2406-2411 6 p.

Research output: Research - peer-reviewArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Xylose
Yeasts
Genes
Fermentation

Simultaneous Utilization of Cellobiose, Xylose, and Acetic Acid from Lignocellulosic Biomass for Biofuel Production by an Engineered Yeast Platform

Wei, N., Oh, E. J., Million, G., Cate, J. H. D. & Jin, Y. S. Jun 19 2015 In : ACS Synthetic Biology. 4, 6, p. 707-713 7 p.

Research output: Research - peer-reviewArticle

Metabolic engineering
Cellobiose
Biofuels
Xylose
Acetic Acid

Uncovering the nutritional landscape of food

Kim, S., Sung, J., Foo, M., Jin, Y. S. & Kim, P. J. Mar 13 2015 In : PLoS ONE. 10, 3, e0118697

Research output: Research - peer-reviewArticle

nutrients
Food
Nutrients
nutrient balance
nutrient requirements

Yeast synthetic biology toolbox and applications for biofuel production

Tsai, C. S., Kwak, S., Turner, T. L. & Jin, Y. S. 2015 In : FEMS Yeast Research. 15, 1, 12206

Research output: Research - peer-reviewShort survey

Synthetic Biology
Biofuels
Yeasts
Biomass
Genes