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Research Output 2000 2020

2020

Xylose assimilation enhances the production of isobutanol in engineered Saccharomyces cerevisiae

Lane, S., Zhang, Y., Yun, E. J., Ziolkowski, L., Zhang, G., Jin, Y. S. & Avalos, J. L., Feb 1 2020, In : Biotechnology and bioengineering. 117, 2, p. 372-381 10 p.

Research output: Contribution to journalArticle

Xylose
Yeast
Saccharomyces cerevisiae
Ethanol
Glucose
2019

An extra copy of the β-glucosidase gene improved the cellobiose fermentation capability of an engineered Saccharomyces cerevisiae strain

Kim, H. J., Lee, W. H., Turner, T. L., Kwak, S. & Jin, Y. S., Oct 1 2019, In : 3 Biotech. 9, 10, 367.

Research output: Contribution to journalArticle

Glucosidases
Cellobiose
cellobiose
glucosidases
Fermentation

Bioenergy and Biorefinery

Han, S. O., Inui, M. & Jin, Y. S., Jun 2019, In : Biotechnology Journal. 14, 6, 1900160.

Research output: Contribution to journalEditorial

Open Access
Yeast
yeast
ethanol
Ethanol
maize

Biosynthetic Routes for Producing Various Fucosyl-Oligosaccharides

Yun, E. J., Liu, J. J., Lee, J. W., Kwak, S., Yu, S., Kim, K. H. & Jin, Y. S., Feb 15 2019, In : ACS synthetic biology. 8, 2, p. 415-424 10 p.

Research output: Contribution to journalArticle

Oligosaccharides
Fucose
Guanosine Diphosphate Fucose
Prebiotics
Sugars

Comparative global metabolite profiling of xylose-fermenting Saccharomyces cerevisiae SR8 and Scheffersomyces stipitis

Shin, M., Kim, J. W., Ye, S., Kim, S., Jeong, D., Lee, D. Y., Kim, J. N., Jin, Y. S., Kim, K. H. & Kim, S. R., Jul 4 2019, In : Applied Microbiology and Biotechnology. 103, 13, p. 5435-5446 12 p.

Research output: Contribution to journalArticle

Xylose
Saccharomyces cerevisiae
Ethanol
Fermentation
Xylulose
Pyruvate Decarboxylase
Glycerolphosphate Dehydrogenase
Glycerol
Yeast
Saccharomyces cerevisiae

Deletion of JEN1 and ADY2 reduces lactic acid yield from an engineered Saccharomyces cerevisiae, in xylose medium, expressing a heterologous lactate dehydrogenase

Turner, T. L., Lane, S., Jayakody, L. N., Zhang, G. C., Kim, H., Cho, W. & Jin, Y. S., Aug 22 2019, In : FEMS yeast research. 19, 6, foz050.

Research output: Contribution to journalArticle

Xylose
L-Lactate Dehydrogenase
Saccharomyces cerevisiae
Lactic Acid
Ethanol

L-Fucose production by engineered Escherichia coli

Liu, J. J., Lee, J. W., Yun, E. J., Jung, S. M., Seo, J. H. & Jin, Y-S., Apr 2019, In : Biotechnology and bioengineering. 116, 4, p. 904-911 8 p.

Research output: Contribution to journalArticle

Fucose
Fermentation
Escherichia coli
Mammals
Enzymatic hydrolysis

Overcoming the thermodynamic equilibrium of an isomerization reaction through oxidoreductive reactions for biotransformation

Liu, J. J., Zhang, G. C., Kwak, S., Oh, E. J., Yun, E. J., Chomvong, K., Cate, J. H. D. & Jin, Y. S., Dec 1 2019, In : Nature communications. 10, 1, 1356.

Research output: Contribution to journalArticle

Open Access
thermodynamic equilibrium
Biotransformation
Isomerization
lactose
galactose

Overexpression of RCK1 improves acetic acid tolerance in Saccharomyces cerevisiae

Oh, E. J., Wei, N., Kwak, S., Kim, H. & Jin, Y-S., Feb 20 2019, In : Journal of Biotechnology. 292, p. 1-4 4 p.

Research output: Contribution to journalArticle

Acetic acid
Acetic Acid
Yeast
Saccharomyces cerevisiae
Fermentation

Production of biofuels and chemicals from xylose using native and engineered yeast strains

Kwak, S., Jo, J. H., Yun, E. J., Jin, Y-S. & Seo, J. H., Mar 1 2019, In : Biotechnology Advances. 37, 2, p. 271-283 13 p.

Research output: Contribution to journalReview article

Xylose
Biofuels
Yeast
Yeasts
Coenzymes

Production of galactitol from galactose by the oleaginous yeast Rhodosporidium toruloides IFO0880

Jagtap, S. S., Bedekar, A. A., Liu, J. J., Jin, Y. S. & Rao, C. V., Oct 18 2019, In : Biotechnology for Biofuels. 12, 1, 250.

Research output: Contribution to journalArticle

Open Access
Galactitol
Galactose
Yeast
yeast
sugar

Redirection of the Glycolytic Flux Enhances Isoprenoid Production in Saccharomyces cerevisiae

Kwak, S., Yun, E. J., Lane, S., Oh, E. J., Kim, K. H. & Jin, Y. S., Jan 1 2019, (Accepted/In press) In : Biotechnology Journal. 1900173.

Research output: Contribution to journalArticle

Terpenes
NADP
Saccharomyces cerevisiae
Phosphofructokinases
Pentose Phosphate Pathway

Synchronization of stochastic expressions drives the clustering of functionally related genes

Xu, H., Liu, J. J., Liu, Z., Li, Y., Jin, Y. S. & Zhang, J., Oct 9 2019, In : Science Advances. 5, 10, aax6525.

Research output: Contribution to journalArticle

Open Access
genes
synchronism
catabolism
galactose
chromatin

Vitamin A Production by Engineered Saccharomyces cerevisiae from Xylose via Two-Phase in Situ Extraction

Sun, L., Kwak, S. & Jin, Y. S., Sep 20 2019, In : ACS synthetic biology. 8, 9, p. 2131-2140 10 p.

Research output: Contribution to journalArticle

Xylose
Vitamins
Vitamin A
Yeast
Saccharomyces cerevisiae

Xylose utilization stimulates mitochondrial production of isobutanol and 2-methyl-1-butanol in Saccharomyces cerevisiae

Zhang, Y., Lane, S., Chen, J. M., Hammer, S. K., Luttinger, J., Yang, L., Jin, Y. S. & Avalos, J. L., Sep 20 2019, In : Biotechnology for Biofuels. 12, 1, 223.

Research output: Contribution to journalArticle

Open Access
1-Butanol
Xylose
Butenes
Yeast
Saccharomyces cerevisiae
2018

A mutation in PGM2 causing inefficient galactose metabolism in the probiotic yeast Saccharomyces boulardii

Liu, J. J., Zhang, G. C., Kong, I. I., Yun, E. J., Zheng, J. Q., Kweon, D. H. & Jin, Y. S., May 1 2018, In : Applied and environmental microbiology. 84, 10, e02858-17.

Research output: Contribution to journalArticle

Saccharomyces cerevisiae var. cerevisiae
probiotics
Probiotics
Galactose
galactose

Bacterial genome editing with CRISPR-Cas9: Taking clostridium beijerinckii as an example

Zhang, Z. T., Jiménez-Bonilla, P., Seo, S. O., Lu, T., Jin, Y-S., Blaschek, H-P. M. & Wang, Y., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 297-325 29 p. (Methods in Molecular Biology; vol. 1772).

Research output: Chapter in Book/Report/Conference proceedingChapter

Clostridium beijerinckii
Clustered Regularly Interspaced Short Palindromic Repeats
Bacterial Genomes
Guide RNA
Streptococcus pyogenes

Biosynthesis of a Functional Human Milk Oligosaccharide, 2′-Fucosyllactose, and l -Fucose Using Engineered Saccharomyces cerevisiae

Liu, J. J., Kwak, S., Pathanibul, P., Lee, J. W., Yu, S., Yun, E. J., Lim, H., Kim, K. H. & Jin, Y-S., Nov 16 2018, In : ACS synthetic biology. 7, 11, p. 2529-2536 8 p.

Research output: Contribution to journalArticle

Oligosaccharides
Fucose
Biosynthesis
Human Milk
Yeast
Clostridium beijerinckii
Flavin Mononucleotide
Clostridium
Fluorescence
Oxygen

Direct conversion of cellulose into ethanol and ethyl-β-d-glucoside via engineered Saccharomyces cerevisiae

Jayakody, L. N., Liu, J. J., Yun, E. J., Turner, T. L., Oh, E. J. & Jin, Y-S., Dec 2018, In : Biotechnology and bioengineering. 115, 12, p. 2859-2868 10 p.

Research output: Contribution to journalArticle

Glucosides
Cellulose
Yeast
Saccharomyces cerevisiae
Ethanol

Direct fermentation of Jerusalem artichoke tuber powder for production of L-lactic acid and D-lactic acid by metabolically engineered Kluyveromyces marxianus

Bae, J. H., Kim, H. J., Kim, M. J., Sung, B. H., Jeon, J. H., Kim, H. S., Jin, Y-S., Kweon, D. H. & Sohn, J. H., Jan 20 2018, In : Journal of Biotechnology. 266, p. 27-33 7 p.

Research output: Contribution to journalArticle

Kluyveromyces
Helianthus
Lactic acid
Powders
Fermentation

Effects of acclimation and pH on ammonia inhibition for mesophilic methanogenic microflora

Park, J. H., Yoon, J. J., Kumar, G., Jin, Y-S. & Kim, S. H., Oct 2018, In : Waste Management. 80, p. 218-223 6 p.

Research output: Contribution to journalArticle

acclimation
ammonia
nitrogen
methane
effect

Engineering and evolution of saccharomyces cerevisiae to produce biofuels and chemicals

Turner, T. L., Kim, H., Kong, I. I., Liu, J. J., Zhang, G. C. & Jin, Y. S., Jan 1 2018, Advances in Biochemical Engineering/Biotechnology. Springer Science and Business Media Deutschland GmbH, p. 175-215 41 p. (Advances in Biochemical Engineering/Biotechnology; vol. 162).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biofuels
Yeast
Saccharomyces cerevisiae
Fossil Fuels
Bioconversion

Enhanced cellobiose fermentation by engineered Saccharomyces cerevisiae expressing a mutant cellodextrin facilitator and cellobiose phosphorylase

Kim, H., Oh, E. J., Lane, S. T., Lee, W. H., Cate, J. H. D. & Jin, Y. S., Jun 10 2018, In : Journal of Biotechnology. 275, p. 53-59 7 p.

Research output: Contribution to journalArticle

cellodextrin phosphorylase
cellobiose phosphorylase
Cellobiose
Yeast
Fermentation

Expression of Gre2p improves tolerance of engineered xylose-fermenting Saccharomyces cerevisiae to glycolaldehyde under xylose metabolism

Jayakody, L. N., Turner, T. L., Yun, E. J., Kong, I. I., Liu, J. J. & Jin, Y. S., Sep 1 2018, In : Applied Microbiology and Biotechnology. 102, 18, p. 8121-8133 13 p.

Research output: Contribution to journalArticle

Xylose
Saccharomyces cerevisiae
Biomass
Fermentation
Pyruvaldehyde

Glucose repression can be alleviated by reducing glucose phosphorylation rate in Saccharomyces cerevisiae

Lane, S., Xu, H., Oh, E. J., Kim, H., Lesmana, A., Jeong, D., Zhang, G., Tsai, C. S., Jin, Y. S. & Kim, S. R., Dec 1 2018, In : Scientific reports. 8, 1, 2613.

Research output: Contribution to journalArticle

Saccharomyces cerevisiae
Phosphorylation
Glucose
Clustered Regularly Interspaced Short Palindromic Repeats
Mutation

Improved squalene production through increasing lipid contents in Saccharomyces cerevisiae

Wei, L. J., Kwak, S., Liu, J. J., Lane, S., Hua, Q., Kweon, D. H. & Jin, Y-S., Jul 2018, In : Biotechnology and bioengineering. 115, 7, p. 1793-1800 8 p.

Research output: Contribution to journalArticle

Squalene
Yeast
Lipids
Saccharomyces cerevisiae
Hydroxymethylglutaryl CoA Reductases

Metabolic engineering of Saccharomyces cerevisiae by using the CRISPR-Cas9 system for enhanced fatty acid production

Kim, D. H., Kim, I. J., Yun, E. J., Kwak, S., Jin, Y-S. & Kim, K. H., Oct 2018, In : Process Biochemistry. 73, p. 23-28 6 p.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Metabolic engineering
Metabolic Engineering
Fatty acids
Yeast

Metabolomic elucidation of the effects of media and carbon sources on fatty acid production by Yarrowia lipolytica

Yun, E. J., Lee, J., Kim, D. H., Kim, J., Kim, S., Jin, Y-S. & Kim, K. H., Apr 20 2018, In : Journal of Biotechnology. 272-273, p. 7-13 7 p.

Research output: Contribution to journalArticle

Yarrowia
Metabolomics
Fatty acids
Glycerol
Lipids

Phenotypic evaluation and characterization of 21 industrial Saccharomyces cerevisiae yeast strains

Kong, I. I., Turner, T. L., Kim, H., Kim, S. R. & Jin, Y. S., Jan 1 2018, In : FEMS yeast research. 18, 1

Research output: Contribution to journalArticle

Fermentation
Saccharomyces cerevisiae
Yeasts
Glucose
Ethanol

Production of a human milk oligosaccharide 2'-fucosyllactose by metabolically engineered Saccharomyces cerevisiae

Yu, S., Liu, J. J., Yun, E. J., Kwak, S., Kim, K. H. & Jin, Y-S., Jun 27 2018, In : Microbial cell factories. 17, 1, 101.

Research output: Contribution to journalArticle

Oligosaccharides
Human Milk
Yeast
Saccharomyces cerevisiae
Salvaging

Promiscuous activities of heterologous enzymes lead to unintended metabolic rerouting in Saccharomyces cerevisiae engineered to assimilate various sugars from renewable biomass

Yun, E. J., Oh, E. J., Liu, J. J., Yu, S., Kim, D. H., Kwak, S., Kim, K. H. & Jin, Y. S., May 14 2018, In : Biotechnology for Biofuels. 11, 1, 140.

Research output: Contribution to journalArticle

Sugars
Yeast
Biomass
yeast
Saccharomyces cerevisiae

Synthetic Whole-Cell Biodevices for Targeted Degradation of Antibiotics

Xia, P. F., Li, Q., Tan, L. R., Liu, M. M., Jin, Y-S. & Wang, S. G., Dec 1 2018, In : Scientific reports. 8, 1, 2906.

Research output: Contribution to journalArticle

Tetracycline
Escherichia coli
Anti-Bacterial Agents
Degradation
Detoxification

The pH-stat Butyric Acid Feeding Strategy Coupled with Gas-Stripping for n-Butanol Production by Clostridium beijerinckii

Lee, D. G., Jeon, J. M., Yang, Y. H., Jin, Y-S. & Yoon, J. J., Jan 1 2018, (Accepted/In press) In : Waste and Biomass Valorization.

Research output: Contribution to journalArticle

Clostridium
Butyric acid
Butenes
acid
Gases

Value-added biotransformation of cellulosic sugars by engineered Saccharomyces cerevisiae

Lane, S., Dong, J. & Jin, Y. S., Jul 2018, In : Bioresource Technology. 260, p. 380-394 15 p.

Research output: Contribution to journalReview article

biotransformation
Sugars
Yeast
sugar
Biofuels

Yeast derived lysA2 can control bacterial contamination in ethanol fermentation

Kim, J. S., Daum, M. A., Jin, Y-S. & Miller, M. J., Jun 2018, In : Viruses. 10, 6, 281.

Research output: Contribution to journalArticle

Fermentation
Ethanol
Yeasts
Saccharum
Lactobacillaceae
2017

Bioethanol production from cellulosic hydrolysates by engineered industrial Saccharomyces cerevisiae

Lee, Y. G., Jin, Y-S., Cha, Y. L. & Seo, J. H., Jan 1 2017, In : Bioresource Technology. 228, p. 355-361 7 p.

Research output: Contribution to journalArticle

polyploidy
Bioethanol
Yeast
yeast
ethanol

Characterization of a Clostridium beijerinckii spo0A mutant and its application for butyl butyrate production

Seo, S. O., Wang, Y., Lu, T., Jin, Y-S. & Blaschek, H-P. M., Jan 1 2017, In : Biotechnology and bioengineering. 114, 1, p. 106-112 7 p.

Research output: Contribution to journalArticle

Clostridium beijerinckii
Clostridium
Butenes
Fermentation
Butyrates

Construction of efficient xylose-fermenting Saccharomyces cerevisiae through a synthetic isozyme system of xylose reductase from Scheffersomyces stipitis

Jo, J. H., Park, Y. C., Jin, Y-S. & Seo, J. H., Jan 1 2017, In : Bioresource Technology. 241, p. 88-94 7 p.

Research output: Contribution to journalArticle

Aldehyde Reductase
Xylose
Yeast
Isoenzymes
ethanol

Elimination of the cryptic plasmid in Leuconostoc citreum by CRISPR/Cas9 system

Jang, Y. J., Seo, S. O., Kim, S. A., Li, L., Kim, T. J., Kim, S. C., Jin, Y. S. & Han, N. S., Jun 10 2017, In : Journal of Biotechnology. 251, p. 151-155 5 p.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Leuconostoc
RNA
Plasmids
Guide RNA

Enhanced ethanol fermentation by engineered Saccharomyces cerevisiae strains with high spermidine contents

Kim, S. K., Jo, J. H., Jin, Y. S. & Seo, J. H., Jan 1 2017, In : Bioprocess and Biosystems Engineering. 40, 5, p. 683-691 9 p.

Research output: Contribution to journalArticle

Spermidine
Yeast
Fermentation
Saccharomyces cerevisiae
Ethanol

Enhanced isoprenoid production from xylose by engineered Saccharomyces cerevisiae

Kwak, S., Kim, S. R., Xu, H., Zhang, G. C., Lane, S., Kim, H. & Jin, Y. S., Nov 2017, In : Biotechnology and bioengineering. 114, 11, p. 2581-2591 11 p.

Research output: Contribution to journalArticle

Xylose
Terpenes
Yeast
Saccharomyces cerevisiae
Ethanol

Enhanced xylose fermentation by engineered yeast expressing NADH oxidase through high cell density inoculums

Zhang, G. C., Turner, T. L. & Jin, Y. S., Mar 1 2017, In : Journal of Industrial Microbiology and Biotechnology. 44, 3, p. 387-395 9 p.

Research output: Contribution to journalArticle

Xylose
Yeast
Fermentation
D-Xylulose Reductase
Cell Count
Cellobiose
Cellulose
Fermentation
Saccharomyces cerevisiae
Ethanol

Genomic, Transcriptional, and Phenotypic Analysis of the Glucose Derepressed Clostridium beijerinckii Mutant Exhibiting Acid Crash Phenotype

Seo, S. O., Janssen, H., Magis, A., Wang, Y., Lu, T., Price, N. D., Jin, Y-S. & Blaschek, H-P. M., Nov 2017, In : Biotechnology Journal. 12, 11, 1700182.

Research output: Contribution to journalArticle

Clostridium beijerinckii
Phenotype
Glucose
Acids
Fermentation

Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis

Sung, J., Kim, S., Cabatbat, J. J. T., Jang, S., Jin, Y. S., Jung, G. Y., Chia, N. & Kim, P. J., Jun 6 2017, In : Nature communications. 8, 15393.

Research output: Contribution to journalArticle

microorganisms
Metabolic Networks and Pathways
Microbiota
Medical problems
Macromolecules
Cellobiose
Saccharification
Glucosidases
Yeast
Fermentation

Metabolic engineering of a haploid strain derived from a triploid industrial yeast for producing cellulosic ethanol

Kim, S. R., Skerker, J. M., Kong, I. I., Kim, H., Maurer, M. J., Zhang, G. C., Peng, D., Wei, N., Arkin, A. P. & Jin, Y. S., Mar 1 2017, In : Metabolic Engineering. 40, p. 176-185 10 p.

Research output: Contribution to journalArticle

Cellulosic ethanol
Metabolic engineering
Metabolic Engineering
Triploidy
Haploidy