Research Output 2000 2018

2018

A mutation in PGM2 causing inefficient galactose metabolism in the probiotic yeast Saccharomyces boulardii

Liu, J. J., Zhang, G. C., Kong, I. I., Yun, E. J., Zheng, J. Q., Kweon, D. H. & Jin, Y. S. May 1 2018 In : Applied and Environmental Microbiology. 84, 10, e02858-17

Research output: Contribution to journalArticle

Saccharomyces cerevisiae var. cerevisiae
probiotics
Probiotics
Galactose
Metabolism

Bacterial genome editing with CRISPR-Cas9: Taking clostridium beijerinckii as an example

Zhang, Z. T., Jiménez-Bonilla, P., Seo, S. O., Lu, T., Jin, Y. S., Blaschek, H. P. & Wang, Y. Jan 1 2018 Methods in Molecular Biology. Humana Press Inc., p. 297-325 29 p. (Methods in Molecular Biology; vol. 1772)

Research output: Chapter in Book/Report/Conference proceedingChapter

Clostridium beijerinckii
Clustered Regularly Interspaced Short Palindromic Repeats
Bacterial Genomes
Guide RNA
Streptococcus pyogenes
Clostridium beijerinckii
Flavin Mononucleotide
Fluorescence
Oxygen
Metabolic Engineering

Direct fermentation of Jerusalem artichoke tuber powder for production of L-lactic acid and D-lactic acid by metabolically engineered Kluyveromyces marxianus

Bae, J. H., Kim, H. J., Kim, M. J., Sung, B. H., Jeon, J. H., Kim, H. S., Jin, Y. S., Kweon, D. H. & Sohn, J. H. Jan 20 2018 In : Journal of Biotechnology. 266, p. 27-33 7 p.

Research output: Contribution to journalArticle

Metabolic engineering
Kluyveromyces
Metabolic Engineering
Inulin
Helianthus

Engineering and evolution of saccharomyces cerevisiae to produce biofuels and chemicals

Turner, T. L., Kim, H., Kong, I. I., Liu, J. J., Zhang, G. C. & Jin, Y. S. Jan 1 2018 Advances in Biochemical Engineering/Biotechnology. Springer Science and Business Media Deutschland GmbH, p. 175-215 41 p. (Advances in Biochemical Engineering/Biotechnology; vol. 162)

Research output: Chapter in Book/Report/Conference proceedingChapter

Biofuels
Yeast
Saccharomyces cerevisiae
Fossil Fuels
Bioconversion

Enhanced cellobiose fermentation by engineered Saccharomyces cerevisiae expressing a mutant cellodextrin facilitator and cellobiose phosphorylase

Kim, H., Oh, E. J., Lane, S. T., Lee, W. H., Cate, J. H. D. & Jin, Y. S. Jun 10 2018 In : Journal of Biotechnology. 275, p. 53-59 7 p.

Research output: Contribution to journalArticle

cellodextrin phosphorylase
cellobiose phosphorylase
Cellobiose
Yeast
Fermentation

Glucose repression can be alleviated by reducing glucose phosphorylation rate in Saccharomyces cerevisiae

Lane, S., Xu, H., Oh, E. J., Kim, H., Lesmana, A., Jeong, D., Zhang, G., Tsai, C. S., Jin, Y. S. & Kim, S. R. Dec 1 2018 In : Scientific Reports. 8, 1, 2613

Research output: Contribution to journalArticle

Saccharomyces cerevisiae
Phosphorylation
Glucose
Clustered Regularly Interspaced Short Palindromic Repeats
Mutation

Improved squalene production through increasing lipid contents in Saccharomyces cerevisiae

Wei, L. J., Kwak, S., Liu, J. J., Lane, S., Hua, Q., Kweon, D. H. & Jin, Y. S. Jan 1 2018 (Accepted/In press) In : Biotechnology and bioengineering.

Research output: Contribution to journalArticle

Nuclear quadrupole resonance
Water recycling
Squalene
Yeast
Lipids

Metabolomic elucidation of the effects of media and carbon sources on fatty acid production by Yarrowia lipolytica

Yun, E. J., Lee, J., Kim, D. H., Kim, J., Kim, S., Jin, Y. S. & Kim, K. H. Apr 20 2018 In : Journal of Biotechnology. 272-273, p. 7-13 7 p.

Research output: Contribution to journalArticle

Yarrowia
Saturated fatty acids
Palmitic acid
Lipogenesis
Metabolomics

Promiscuous activities of heterologous enzymes lead to unintended metabolic rerouting in Saccharomyces cerevisiae engineered to assimilate various sugars from renewable biomass

Yun, E. J., Oh, E. J., Liu, J. J., Yu, S., Kim, D. H., Kwak, S., Kim, K. H. & Jin, Y. S. May 14 2018 In : Biotechnology for Biofuels. 11, 1, 140

Research output: Contribution to journalArticle

Metabolites
Sugars
Yeast
Biomass
yeast

Synthetic Whole-Cell Biodevices for Targeted Degradation of Antibiotics

Xia, P. F., Li, Q., Tan, L. R., Liu, M. M., Jin, Y. S. & Wang, S. G. Dec 1 2018 In : Scientific Reports. 8, 1, 2906

Research output: Contribution to journalArticle

Tetracycline
Escherichia coli
Anti-Bacterial Agents
Degradation
Detoxification

Value-added biotransformation of cellulosic sugars by engineered Saccharomyces cerevisiae

Lane, S., Dong, J. & Jin, Y. S. Jan 1 2018 (Accepted/In press) In : Bioresource Technology.

Research output: Contribution to journalArticle

Biofuels
Biotransformation
Saccharomyces cerevisiae
Yeasts
Metabolic Engineering

Yeast derived lysA2 can control bacterial contamination in ethanol fermentation

Kim, J. S., Daum, M. A., Jin, Y. S. & Miller, M. J. Jun 1 2018 In : Viruses. 10, 6, 281

Research output: Contribution to journalArticle

Fermentation
Ethanol
Yeasts
Saccharum
Lactobacillaceae
2017

Bioethanol production from cellulosic hydrolysates by engineered industrial Saccharomyces cerevisiae

Lee, Y. G., Jin, Y. S., Cha, Y. L. & Seo, J. H. Jan 1 2017 In : Bioresource Technology. 228, p. 355-361 7 p.

Research output: Contribution to journalArticle

polyploidy
Bioethanol
Yeast
yeast
ethanol

Characterization of a Clostridium beijerinckii spo0A mutant and its application for butyl butyrate production

Seo, S. O., Wang, Y., Lu, T., Jin, Y. S. & Blaschek, H. P. Jan 1 2017 In : Biotechnology and Bioengineering. 114, 1, p. 106-112 7 p.

Research output: Contribution to journalArticle

Clostridium beijerinckii
Clostridium
Butenes
Fermentation
Butyrates

Construction of efficient xylose-fermenting Saccharomyces cerevisiae through a synthetic isozyme system of xylose reductase from Scheffersomyces stipitis

Jo, J. H., Park, Y. C., Jin, Y. S. & Seo, J. H. Jan 1 2017 In : Bioresource Technology. 241, p. 88-94 7 p.

Research output: Contribution to journalArticle

Aldehyde Reductase
Xylose
Yeast
Isoenzymes
ethanol

Elimination of the cryptic plasmid in Leuconostoc citreum by CRISPR/Cas9 system

Jang, Y. J., Seo, S. O., Kim, S. A., Li, L., Kim, T. J., Kim, S. C., Jin, Y. S. & Han, N. S. Jun 10 2017 In : Journal of Biotechnology. 251, p. 151-155 5 p.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Leuconostoc
Plasmids
Guide RNA
Genetic Engineering

Enhanced ethanol fermentation by engineered Saccharomyces cerevisiae strains with high spermidine contents

Kim, S. K., Jo, J. H., Jin, Y. S. & Seo, J. H. Jan 1 2017 In : Bioprocess and Biosystems Engineering. 40, 5, p. 683-691 9 p.

Research output: Contribution to journalArticle

Spermidine
Yeast
Fermentation
Saccharomyces cerevisiae
Ethanol

Enhanced isoprenoid production from xylose by engineered Saccharomyces cerevisiae

Kwak, S., Kim, S. R., Xu, H., Zhang, G. C., Lane, S., Kim, H. & Jin, Y. S. Nov 1 2017 In : Biotechnology and bioengineering. 114, 11, p. 2581-2591 11 p.

Research output: Contribution to journalArticle

Xylose
Terpenes
Yeast
Saccharomyces cerevisiae
Ethanol

Enhanced xylose fermentation by engineered yeast expressing NADH oxidase through high cell density inoculums

Zhang, G. C., Turner, T. L. & Jin, Y. S. Mar 1 2017 In : Journal of Industrial Microbiology and Biotechnology. 44, 3, p. 387-395 9 p.

Research output: Contribution to journalArticle

Xylose
Fermentation
D-Xylulose Reductase
Cell Count
Yeasts
Cellobiose
Cellulose
Fermentation
Saccharomyces cerevisiae
Ethanol

Genomic, Transcriptional, and Phenotypic Analysis of the Glucose Derepressed Clostridium beijerinckii Mutant Exhibiting Acid Crash Phenotype

Seo, S. O., Janssen, H., Magis, A., Wang, Y., Lu, T., Price, N. D., Jin, Y. S. & Blaschek, H. P. Nov 1 2017 In : Biotechnology Journal. 12, 11, 1700182

Research output: Contribution to journalArticle

Clostridium beijerinckii
Phenotype
Glucose
Acids
Fermentation

Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis

Sung, J., Kim, S., Cabatbat, J. J. T., Jang, S., Jin, Y. S., Jung, G. Y., Chia, N. & Kim, P. J. Jun 6 2017 In : Nature Communications. 8, 15393

Research output: Contribution to journalArticle

microorganisms
Metabolic Networks and Pathways
Microbiota
Medical problems
Macromolecules
Cellobiose
beta-Glucosidase
Fermentation
Saccharomyces cerevisiae
Ethanol

Metabolic engineering of a haploid strain derived from a triploid industrial yeast for producing cellulosic ethanol

Kim, S. R., Skerker, J. M., Kong, I. I., Kim, H., Maurer, M. J., Zhang, G. C., Peng, D., Wei, N., Arkin, A. P. & Jin, Y. S. Mar 1 2017 In : Metabolic Engineering. 40, p. 176-185 10 p.

Research output: Contribution to journalArticle

Cellulosic ethanol
Metabolic engineering
Metabolic Engineering
Triploidy
Haploidy

Metabolic engineering of Saccharomyces cerevisiae for production of spermidine under optimal culture conditions

Kim, S. K., Jo, J. H., Park, Y. C., Jin, Y. S. & Seo, J. H. Jun 1 2017 In : Enzyme and Microbial Technology. 101, p. 30-35 6 p.

Research output: Contribution to journalArticle

Metabolic engineering
Metabolic Engineering
Spermidine
Yeast
Saccharomyces cerevisiae

Metabolic engineering of yeast for lignocellulosic biofuel production

Jin, Y. S. & Cate, J. H. D. Dec 1 2017 In : Current Opinion in Chemical Biology. 41, p. 99-106 8 p.

Research output: Contribution to journalReview article

Metabolic engineering
Metabolic Engineering
Biofuels
Yeast
Yeasts

Production of fuels and chemicals from xylose by engineered Saccharomyces cerevisiae: A review and perspective

Kwak, S. & Jin, Y. S. May 11 2017 In : Microbial Cell Factories. 16, 1, 82

Research output: Contribution to journalReview article

Xylose
Yeast
Saccharomyces cerevisiae
Yeasts
Metabolism

Recycling Carbon Dioxide during Xylose Fermentation by Engineered Saccharomyces cerevisiae

Xia, P. F., Zhang, G. C., Walker, B., Seo, S. O., Kwak, S., Liu, J. J., Kim, H., Ort, D. R., Wang, S. G. & Jin, Y. S. Feb 17 2017 In : ACS Synthetic Biology. 6, 2, p. 276-283 8 p.

Research output: Contribution to journalArticle

Xylose
Recycling
Pentoses
Carbon Dioxide
Pentose Phosphate Pathway

Short communication: Conversion of lactose and whey into lactic acid by engineered yeast

Turner, T. L., Kim, E., Hwang, C. H., Zhang, G. C., Liu, J. J. & Jin, Y. S. Jan 1 2017 In : Journal of Dairy Science. 100, 1, p. 124-128 5 p.

Research output: Contribution to journalArticle

Lactose
whey
lactic acid
animal communication
lactose

Transporter engineering for cellobiose fermentation under lower pH conditions by engineered Saccharomyces cerevisiae

Oh, E. J., Kwak, S., Kim, H. & Jin, Y. S. Dec 1 2017 In : Bioresource Technology. 245, p. 1469-1475 7 p.

Research output: Contribution to journalArticle

Cellobiose
Yeast
Fermentation
fermentation
engineering
2016
Clostridium beijerinckii
Clustered Regularly Interspaced Short Palindromic Repeats
Bacterial Genomes
Clostridium
Nucleotides

Comparison of xylose fermentation by two high-performance engineered strains of Saccharomyces cerevisiae

Li, X., Park, A., Estrela, R., Kim, S. R., Jin, Y. S. & Cate, J. H. D. Mar 1 2016 In : Biotechnology Reports. 9, p. 53-56 4 p.

Research output: Contribution to journalArticle

xylose isomerase
D-Xylulose Reductase
Xylose
Aldehyde Reductase
Fermentation
Biotechnology
Fillers
Food
Nexus

Enhanced production of 2,3-Butanediol by engineered Saccharomyces cerevisiae through fine-tuning of Pyruvate decarboxylase and NADH oxidase activities

Kim, J. W., Kim, J., Seo, S. O., Kim, K. H., Jin, Y. S. & Seo, J. H. Jan 1 2016 In : Biotechnology for Biofuels. 9, 1, 265

Research output: Contribution to journalArticle

Pyruvate Oxidase
Pyruvate Decarboxylase
Yeast
yeast
Saccharomyces cerevisiae

Enhanced production of 2,3-butanediol in pyruvate decarboxylase-deficient Saccharomyces cerevisiae through optimizing ratio of glucose/galactose

Choi, E. J., Kim, J. W., Kim, S. J., Seo, S. O., Lane, S., Park, Y. C., Jin, Y. S. & Seo, J. H. Nov 1 2016 In : Biotechnology Journal. 11, 11, p. 1424-1432 9 p.

Research output: Contribution to journalArticle

Pyruvate Decarboxylase
Galactose
Saccharomyces cerevisiae
Glucose
Biomass

Fumarate-mediated persistence of Escherichia coli against antibiotics

Kim, J. S., Cho, D. H., Heo, P., Jung, S. C., Park, M., Oh, E. J., Sung, J., Kim, P. J., Lee, S. C., Lee, D. H., Lee, S., Lee, C. H., Shin, D., Jin, Y. S. & Kweon, D. H. Apr 1 2016 In : Antimicrobial Agents and Chemotherapy. 60, 4, p. 2232-2240 9 p.

Research output: Contribution to journalArticle

Fumarates
Succinate Dehydrogenase
Escherichia coli
Anti-Bacterial Agents
Operon

Gene amplification on demand accelerates cellobiose utilization in engineered Saccharomyces cerevisiae

Oh, E. J., Skerker, J. M., Kim, S. R., Wei, N., Turner, T. L., Maurer, M. J., Arkin, A. P. & Jin, Y. S. Jun 1 2016 In : Applied and Environmental Microbiology. 82, 12, p. 3631-3639 9 p.

Research output: Contribution to journalArticle

gene amplification
Cellobiose
cellobiose
Gene Amplification
yeast

Gene transcription repression in Clostridium beijerinckii using CRISPR-dCas9

Wang, Y., Zhang, Z. T., Seo, S. O., Lynn, P., Lu, T., Jin, Y. S. & Blaschek, H. P. Dec 1 2016 In : Biotechnology and Bioengineering. 113, 12, p. 2739-2743 5 p.

Research output: Contribution to journalArticle

Clostridium beijerinckii
Clustered Regularly Interspaced Short Palindromic Repeats
Clostridium
Transcription
Genes

GroE chaperonins assisted functional expression of bacterial enzymes in Saccharomyces cerevisiae

Xia, P. F., Zhang, G. C., Liu, J. J., Kwak, S., Tsai, C. S., Kong, I. I., Sung, B. H., Sohn, J. H., Wang, S. G. & Jin, Y. S. Oct 1 2016 In : Biotechnology and bioengineering. 113, 10, p. 2149-2155 7 p.

Research output: Contribution to journalArticle

Chaperonins
xylose isomerase
Yeast
Saccharomyces cerevisiae
Enzymes

Lactic acid production from cellobiose and xylose by engineered Saccharomyces cerevisiae

Turner, T. L., Zhang, G. C., Oh, E. J., Subramaniam, V., Adiputra, A., Subramaniam, V., Skory, C. D., Jang, J. Y., Yu, B. J., Park, I. & Jin, Y. S. May 1 2016 In : Biotechnology and Bioengineering. 113, 5, p. 1075-1083 9 p.

Research output: Contribution to journalArticle

Cellobiose
Xylose
Lactic acid
Yeast
Saccharomyces cerevisiae

Lactose fermentation by engineered Saccharomyces cerevisiae capable of fermenting cellobiose

Liu, J. J., Zhang, G. C., Oh, E. J., Pathanibul, P., Turner, T. L. & Jin, Y. S. Sep 20 2016 In : Journal of Biotechnology. 234, p. 99-104 6 p.

Research output: Contribution to journalArticle

Cellobiose
Lactose
Fermentation
Saccharomyces cerevisiae
Metabolic Engineering

Metabolic engineering of probiotic Saccharomyces boulardii

Liu, J. J., Kong, I. I., Zhang, G. C., Jayakody, L. N., Kim, H., Xia, P. F., Kwak, S., Sung, B. H., Sohn, J. H., Walukiewicz, H. E., Rao, C. V. & Jin, Y. S. Apr 1 2016 In : Applied and Environmental Microbiology. 82, 8, p. 2280-2287 8 p.

Research output: Contribution to journalArticle

Saccharomyces cerevisiae var. cerevisiae
Metabolic Engineering
metabolic engineering
probiotics
Probiotics

Mitigating health risks associated with alcoholic beverages through metabolic engineering

Jayakody, L. N., Lane, S., Kim, H. & Jin, Y. S. Feb 1 2016 In : Current Opinion in Biotechnology. 37, p. 173-181 9 p.

Research output: Contribution to journalReview article

Metabolic engineering
Metabolic Engineering
Alcoholic Beverages
Health risks
Yeast

Optimization of an acetate reduction pathway for producing cellulosic ethanol by engineered yeast

Zhang, G. C., Kong, I. I., Wei, N., Peng, D., Turner, T. L., Sung, B. H., Sohn, J. H. & Jin, Y. S. Dec 1 2016 In : Biotechnology and Bioengineering. 113, 12, p. 2587-2596 10 p.

Research output: Contribution to journalArticle

Cellulosic ethanol
Xylose
Yeast
Acetates
Ethanol

Overcoming the limited availability of human milk oligosaccharides: Challenges and opportunities for research and application

Bode, L., Contractor, N., Barile, D., Pohl, N., Prudden, A. R., Boons, G. J., Jin, Y. S. & Jennewein, S. Oct 1 2016 In : Nutrition Reviews. 74, 10, p. 635-644 10 p., nuw025

Research output: Contribution to journalArticle

Human Milk
Oligosaccharides
Research
Metabolic Engineering
Infant Formula

PHO13 deletion-induced transcriptional activation prevents sedoheptulose accumulation during xylose metabolism in engineered Saccharomyces cerevisiae

Xu, H., Kim, S., Sorek, H., Lee, Y., Jeong, D., Kim, J., Oh, E. J., Yun, E. J., Wemmer, D. E., Kim, K. H., Kim, S. R. & Jin, Y. S. Mar 1 2016 In : Metabolic Engineering. 34, p. 88-96 9 p.

Research output: Contribution to journalArticle

Xylose
Metabolism
Yeast
Transcriptional Activation
Saccharomyces cerevisiae

Rapid and efficient galactose fermentation by engineered Saccharomyces cerevisiae

Quarterman, J., Skerker, J. M., Feng, X., Liu, I. Y., Zhao, H., Arkin, A. P. & Jin, Y. S. Jul 10 2016 In : Journal of Biotechnology. 229, p. 13-21 9 p.

Research output: Contribution to journalArticle

Galactose
Fermentation
Saccharomyces cerevisiae
Respiration
Yeasts

Recent advances in biological production of sugar alcohols

Park, Y. C., Oh, E. J., Jo, J. H., Jin, Y. S. & Seo, J. H. Feb 1 2016 In : Current Opinion in Biotechnology. 37, p. 105-113 9 p.

Research output: Contribution to journalReview article

Sugar Alcohols
Erythritol
Catabolite Repression
Metabolic engineering
Metabolic Engineering
2015

Combining C6 and C5 sugar metabolism for enhancing microbial bioconversion

Zhang, G. C., Liu, J. J., Kong, I. I., Kwak, S. & Jin, Y. S. Dec 1 2015 In : Current Opinion in Chemical Biology. 29, p. 49-57 9 p.

Research output: Contribution to journalReview article

Bioconversion
Metabolism
Sugars
Fermentation
Biomass