Victoria Stodden

20042019
If you made any changes in Pure, your changes will be visible here soon.

Research Output 2004 2019

Filter
Article
2019

Computing environments for reproducibility: Capturing the “Whole Tale”

Brinckman, A., Chard, K., Gaffney, N., Hategan, M., Jones, M. B., Kowalik, K., Kulasekaran, S., Ludaescher, B., Mecum, B. D., Nabrzyski, J., Stodden, V., Taylor, I. J., Turk, M. J. & Turner, K., May 1 2019, In : Future Generation Computer Systems. 94, p. 854-867 14 p.

Research output: Contribution to journalArticle

Data mining
Big data
2018

An empirical analysis of journal policy effectiveness for computational reproducibility

Stodden, V., Seiler, J. & Ma, Z., Mar 13 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 11, p. 2584-2589 6 p.

Research output: Contribution to journalArticle

workflow
random sample
artifact
communication
science

Realizing the potential of data science

Berman, F., Rutenbar, R., Hailpern, B., Christensen, H., Davidson, S., Estrin, D., Franklin, M., Martonosi, M., Raghavan, P., Stodden, V. & Szalay, A. S., Apr 1 2018, In : Communications of the ACM. 61, 4, p. 67-72 6 p.

Research output: Contribution to journalArticle

2017

Four simple recommendations to encourage best practices in research software

Jiménez, R. C., Kuzak, M., Alhamdoosh, M., Barker, M., Batut, B., Borg, M., Capella-Gutierrez, S., Chue Hong, N., Cook, M., Corpas, M., Flannery, M., Garcia, L., Gelpí, J. L., Gladman, S., Goble, C., González Ferreiro, M., Gonzalez-Beltran, A., Griffin, P. C., Grüning, B., Hagberg, J. & 29 others, Holub, P., Hooft, R., Ison, J., Katz, D. S., Leskošek, B., López Gómez, F., Oliveira, L. J., Mellor, D., Mosbergen, R., Mulder, N., Perez-Riverol, Y., Pergl, R., Pichler, H., Pope, B., Sanz, F., Schneider, M. V., Stodden, V., Suchecki, R., Svobodová Vařeková, R., Talvik, H. A., Todorov, I., Treloar, A., Tyagi, S., van Gompel, M., Vaughan, D., Via, A., Wang, X., Watson-Haigh, N. S. & Crouch, S., Jan 1 2017, In : F1000Research. 6, 876.

Research output: Contribution to journalArticle

Practice Guidelines
Software
Research
Sustainable development
Software engineering

Structuring supplemental materials in support of reproducibility

Greenbaum, D., Rozowsky, J., Stodden, V. & Gerstein, M., Apr 5 2017, In : Genome biology. 18, 1, 64.

Research output: Contribution to journalArticle

Genomics
reproducibility
branching
genomics
material
2015

Reproducing statistical results

Stodden, V., Apr 10 2015, In : Annual Review of Statistics and Its Application. 2, p. 1-19 19 p.

Research output: Contribution to journalArticle

Disclosure
Reproducibility
Statistical test
Incentives
Reward

ResearchCompendia.org: Cyberinfrastructure for reproducibility and collaboration in computational science

Stodden, V., Miguez, S. & Seiler, J., Jan 1 2015, In : Computing in Science and Engineering. 17, 1, p. 12-19 8 p., 7030302.

Research output: Contribution to journalArticle

Transparency
Demonstrations
Pipelines
2014
Leishmania major
amastigotes
promastigotes
antimicrobial peptides
Parasites

The reproducible research movement in statistics

Stodden, V., 2014, In : Statistical Journal of the IAOS. 30, 2, p. 91-93 3 p.

Research output: Contribution to journalArticle

Statistics
Movement
Open science
Science policy
2013

Toward Reproducible Computational Research: An Empirical Analysis of Data and Code Policy Adoption by Journals

Stodden, V., Guo, P. & Ma, Z., Jun 21 2013, In : PloS one. 8, 6, e67111.

Research output: Contribution to journalArticle

Empirical Research
data analysis
Availability
Information Dissemination
2012

Reproducible research for scientific computing: Tools and strategies for changing the culture

Leveque, R., Mitchell, I. & Stodden, V., Jul 30 2012, In : Computing in Science and Engineering. 14, 4, p. 13-17 5 p., 6171147.

Research output: Contribution to journalArticle

Natural sciences computing
2010
science policy
Lead
Innovation
innovation
science
2009

Reproducible research in computational harmonic analysis

Donoho, D. L., Maleki, A., Shahram, M., Rahman, I. U. & Stodden, V., Jan 1 2009, In : Computing in Science and Engineering. 11, 1, p. 8-18 11 p., 4720218.

Research output: Contribution to journalArticle

Harmonic analysis
Atomizers
Patents and inventions
Sales

The legal framework for reproducible scientific research: Licensing and copyright

Stodden, V., Jan 1 2009, In : Computing in Science and Engineering. 11, 1, p. 35-40 6 p., 4720221.

Research output: Contribution to journalArticle

Patents and inventions
Sales
2007

Virtual northern analysis of the human genome

Hurowitz, E. H., Drori, I., Stodden, V., Donoho, D. L. & Brown, P. O., May 23 2007, In : PloS one. 2, 5, e460.

Research output: Contribution to journalArticle

Human Genome
Genes
Messenger RNA
genome
Untranslated Regions
2005

Multiscale representations for manifold-valued data

Rahman, I. U., Drori, I., Stodden, V., Donoho, D. L. & Schröder, P., Dec 1 2005, In : Multiscale Modeling and Simulation. 4, 4, p. 1201-1232 32 p.

Research output: Contribution to journalArticle

wavelet
compression
Wavelet Coefficients
software
matrix