Vetle Ingvald Torvik

Article

ADAM: Another database of abbreviations in MEDLINE

Zhou, W., Torvik, V. I. & Smalheiser, N. R., Nov 15 2006, In : Bioinformatics. 22, 22, p. 2813-2818 6 p.

Research output: Contribution to journal › Article

Abbreviation

MEDLINE

Databases

Unified Medical Language System

Terminology

Anne O'Tate: A tool to support user-driven summarization, drill-down and browsing of PubMed search results

Smalheiser, N. R., Zhou, W. & Torvik, V. I., Feb 15 2008, In : Journal of Biomedical Discovery and Collaboration. 3, 2.

Research output: Contribution to journal › Article

Mandrillus

PubMed

Drilling

Peer Review

Names

A population-based statistical approach identifies parameters characteristics of human microRNA-mRNA interactions

Smalheiser, N. R. & Torvik, V. I., Sep 28 2004, In : BMC bioinformatics. 5, 139.

Research output: Contribution to journal › Article

MicroRNA

MicroRNAs

Messenger RNA

Interaction

Population

A probabilistic similarity metric for medline records: A model for author name disambiguation

Torvik, V. I., Weeber, M., Swanson, D. R. & Smalheiser, N. R., Jan 15 2005, In : Journal of the American Society for Information Science and Technology. 56, 2, p. 140-158 19 p.

Research output: Contribution to journal › Article

Contamination

environmental pollution

public service

language

Language

A probabilistic similarity metric for Medline records: a model for author name disambiguation.

Torvik, V. I., Weeber, M., Swanson, D. R. & Smalheiser, N. R., 2003, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 1 p.

Research output: Contribution to journal › Article

Names

Medical Subject Headings

Language

benzoylprop-ethyl

A quantitative model for linking two disparate sets of articles in MEDLINE

Torvik, V. I. & Smalheiser, N. R., Jul 1 2007, In : Bioinformatics. 23, 13, p. 1658-1665 8 p.

Research output: Contribution to journal › Article

Data Mining

MEDLINE

Literature Based Discovery

Linking

Logistic Models

Arrowsmith two-node search interface: A tutorial on finding meaningful links between two disparate sets of articles in MEDLINE

Smalheiser, N. R., Torvik, V. I. & Zhou, W., May 1 2009, In : Computer Methods and Programs in Biomedicine. 94, 2, p. 190-197 8 p.

Research output: Contribution to journal › Article

PubMed

MEDLINE

Literature

Data Mining

Research Personnel

Author name disambiguation in MEDLINE

Torvik, V. I. & Smalheiser, N. R., Jul 1 2009, In : ACM Transactions on Knowledge Discovery from Data. 3, 3, 11.

Research output: Contribution to journal › Article

Cluster computing

Data integration

Electronic mail

Information retrieval

Maximum likelihood

Beyond (simple) reading: Strategies, discoveries, and collaborations

Torvik, V. I., Renear, A. H., Smalheiser, N. R. & Marshall, C. C., Dec 1 2009, In : Proceedings of the ASIST Annual Meeting. 46

Research output: Contribution to journal › Article

Collaborative development of the Arrowsmith two node search interface designed for laboratory investigators

Smalheiser, N. R., Torvik, V. I., Bischoff-Grethe, A., Burhans, L. B., Gabriel, M., Homayouni, R., Kashef, A., Martone, M. E., Perkins, G. A., Price, D. L., Talk, A. C. & West, R., Jul 3 2006, In : Journal of Biomedical Discovery and Collaboration. 1, 1, 8.

Research output: Contribution to journal › Article

Research Personnel

World Wide Web

Scientific Community

Deconstructing the collaborative impact: Article and author characteristics that influence citation count

Hurley, L. A., Ogier, A. L. & Torvik, V. I., 2013, In : Proceedings of the ASIST Annual Meeting. 50, 1

Research output: Contribution to journal › Article

Metadata

Logistics

open access

Group

logistics

Disambiguation and co-authorship networks of the U.S. patent inventor database (1975-2010)

Li, G. C., Lai, R., D'Amour, A., Doolin, D. M., Sun, Y., Torvik, V. I., Yu, A. Z. & Lee, F., Jul 2014, In : Research Policy. 43, 6, p. 941-955 15 p.

Research output: Contribution to journal › Article

Innovation

Visualization

Time and motion study

Trademarks

Patents and inventions

Distribution of "Characteristic" Terms in MEDLINE Literatures

Smalheiser, N. R., Zhou, W. & Torvik, V. I., 2011, In : Information (Switzerland). 2, 2, p. 266-276 11 p.

Research output: Contribution to journal › Article

Open Access

Does collaboration bring high-impact studies? A preliminary study

Lu, C., Bu, Y., Zhang, C., Ding, Y., Torvik, V. I. & Zhang, C., Jan 1 2017, In : Proceedings of the Association for Information Science and Technology. 54, 1, p. 750-751 2 p.

Research output: Contribution to journal › Article

biology

Examining scientific writing styles from the perspective of linguistic complexity

Lu, C., Bu, Y., Wang, J., Ding, Y., Torvik, V., Schnaars, M. & Zhang, C., May 2019, In : Journal of the Association for Information Science and Technology. 70, 5, p. 462-475 14 p.

Research output: Contribution to journal › Article

Linguistics

linguistics

Syntactics

speaking

Group

Expression of microRNAs and their precursors in synaptic fractions of adult mouse forebrain

Lugli, G., Torvik, V. I., Larson, J. & Smalheiser, N. R., Jul 1 2008, In : Journal of Neurochemistry. 106, 2, p. 650-661 12 p.

Research output: Contribution to journal › Article

Prosencephalon

MicroRNAs

Post-Synaptic Density

Brain

Dendritic Spines

Guided inference of nested monotone Boolean functions

Torvik, V. I. & Triantaphyllou, E., May 1 2003, In : Information Sciences. 151, SUPPL, p. 171-200 30 p.

Research output: Contribution to journal › Article

Monotone Boolean Function

Average Complexity

Query Complexity

Boolean functions

Sufficiency

Has Large-Scale Named-Entity Network Analysis Been Resting on a Flawed Assumption?

Fegley, B. D. & Torvik, V. I., Jul 24 2013, In : PloS one. 8, 7, e70299.

Research output: Contribution to journal › Article

patents

Electric network analysis

Names

Cluster Analysis

Inventors

Kin of coauthorship in five decades of health science literature

Prosperi, M., Buchan, I., Fanti, I., Meloni, S., Palladino, P. & Torvik, V. I., Aug 9 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 32, p. 8957-8962 6 p.

Research output: Contribution to journal › Article

Medicine in Literature

Health

PubMed

MEDLINE

Cluster Analysis

MapAffil: A bibliographic tool for mapping author affiliation strings to cities and their geocodes worldwide

Torvik, V. I., Jan 1 2015, In : D-Lib Magazine. 21, 11-12, p. 1 1 p.

Research output: Contribution to journal › Article

city center

information retrieval

search engine

random sample

USSR

MicroRNA expression in rat brain exposed to repeated inescapable shock: Differential alterations in learned helplessness vs. non-learned helplessness

Smalheiser, N. R., Lugli, G., Rizavi, H. S., Zhang, H., Torvik, V. I., Pandey, G. N., Davis, J. M. & Dwivedi, Y., Nov 1 2011, In : International Journal of Neuropsychopharmacology. 14, 10, p. 1315-1325 11 p.

Research output: Contribution to journal › Article

Learned Helplessness

MicroRNAs

Shock

Brain

Down-Regulation

MicroRNA expression is down-regulated and reorganized in prefrontal cortex of depressed suicide subjects

Smalheiser, N. R., Lugli, G., Rizavi, H. S., Torvik, V. I., Turecki, G. & Dwivedi, Y., Mar 9 2012, In : PloS one. 7, 3, e33201.

Research output: Contribution to journal › Article

suicide

Prefrontal Cortex

MicroRNAs

microRNA

Suicide

Natural antisense transcripts are co-expressed with sense mRNAs in synaptoneurosomes of adult mouse forebrain

Smalheiser, N. R., Lugli, G., Torvik, V. I., Mise, N., Ikeda, R. & Abe, K., Dec 1 2008, In : Neuroscience Research. 62, 4, p. 236-239 4 p.

Research output: Contribution to journal › Article

Prosencephalon

Untranslated RNA

Dendritic Spines

Messenger RNA

Subcellular Fractions

Olfactory discrimination training up-regulates and reorganizes expression of microRNAs in adult mouse hippocampus

Smalheiser, N. R., Lugli, G., Lenon, A. L., Davis, J. M., Torvik, V. I. & Larson, J., Mar 22 2010, In : ASN Neuro. 2, 1, p. 39-48 10 p., e00028.

Research output: Contribution to journal › Article

MicroRNAs

Hippocampus

Up-Regulation

Calcium-Calmodulin-Dependent Protein Kinase Type 2

Learning

On the role of poetic versus nonpoetic features in "kindred" and diachronic poetry attribution

Fegley, B. D. & Torvik, V. I., Nov 1 2012, In : Journal of the American Society for Information Science and Technology. 63, 11, p. 2165-2181 17 p.

Research output: Contribution to journal › Article

attribution

poetry

Support vector machines

discrimination

folk music

Quantifying conceptual novelty in the biomedical literature

Mishra, S. & Torvik, V. I., Jan 1 2016, In : D-Lib Magazine. 22, 9-10

Research output: Contribution to journal › Article

logistics

literature

Ranking indirect connections in literature-based discovery: The role of medical subject headings

Swanson, D. R., Smalheiser, N. R. & Torvik, V. I., Sep 1 2006, In : Journal of the American Society for Information Science and Technology. 57, 11, p. 1427-1439 13 p.

Research output: Contribution to journal › Article

Magnesium

ranking

Computer systems

expert

literature

Self-citation is the hallmark of productive authors, of any gender

Mishra, S., Fegley, B. D., Diesner, J. & Torvik, V. I., Sep 2018, In : PloS one. 13, 9, e0195773.

Research output: Contribution to journal › Article

Visibility

Publications

gender

Language

Bibliographic Databases

Spatiotemporal analysis of tropical disease research combining Europe PMC and affiliation mapping web services

Palmblad, M. & Torvik, V. I., Oct 26 2017, In : Tropical Medicine and Health. 45, 1, 33.

Research output: Contribution to journal › Article

Spatio-Temporal Analysis

Workflow

Bibliometrics

Research

Tropical Medicine

The reliability issue of computer-aided breast cancer diagnosis

Kovalerchuk, B., Triantaphyllou, E., Ruiz, J. F., Torvik, V. I. & Vityaev, E., Jan 1 2000, In : Computers and Biomedical Research. 33, 4, p. 296-313 18 p.

Research output: Contribution to journal › Article

Breast Neoplasms

Neural networks

Chapter

Author name disambiguation

Smalheiser, N. R. & Torvik, V. I., Jan 1 2009, Annual Review of Information Science and Technology. Cronin, B. (ed.). p. 287-313 27 p. (Annual Review of Information Science and Technology; vol. 43).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Models of microRNA–target coordination

Smalheiser, N. R. & Torvik, V. I., Jan 1 2007, MicroRNAs: From Basic Science to Disease Biology. Cambridge University Press, p. 221-226 6 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

MicroRNAs

RNA

RNA Sequence Analysis

Messenger RNA

Seed

Conference article

A concept-based framework for passage retrieval in genomics

Zhou, W., Yu, C. T., Torvik, V. I. & Smalheiser, N. R., Dec 1 2006, In : NIST Special Publication.

Research output: Contribution to journal › Conference article

HTML

Genomics

Experiments

Conference contribution

A search engine approach to estimating temporal changes in gender orientation of first names

Smith, B. N., Singh, M. & Torvik, V. I., Aug 23 2013, JCDL 2013 - Proceedings of the 13th ACM/IEEE-CS Joint Conference on Digital Libraries. p. 199-208 10 p. (Proceedings of the ACM/IEEE Joint Conference on Digital Libraries).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Search engines

Digital libraries

Logistics

Geographical distribution of biomedical research in the USA and China

Guan, Y., Du, J. & Torvik, V. I., Dec 15 2017, WOSP 2017 - Proceedings of the 6th International Workshop on Mining Scientific Publications, Co-located with 2017 Joint Conference on Digital Libraries, JCDL 2017. Association for Computing Machinery, p. 40-45 6 p. (ACM International Conference Proceeding Series).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Geographical distribution

Knowledge-intensive conceptual retrieval and passage extraction of biomedical literature

Zhou, W., Yu, C., Smalheiser, N., Torvik, V. & Hong, J., Nov 30 2007, Proceedings of the 30th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, SIGIR'07. p. 655-662 8 p. (Proceedings of the 30th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, SIGIR'07).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Information retrieval systems

Retrieval

Information Retrieval

Genomics

Knowledge

Predicting medical subject headings based on abstract similarity and citations to MEDLINE records

Kehoe, A. K. & Torvik, V. I., Sep 1 2016, JCDL 2016 - Proceedings of the 16th ACM/IEEE-CS Joint Conference on Digital Libraries. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-September. p. 167-170 4 p. 7559580

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Classifiers

Neuroimaging

Experiments

Predicting MeSH beyond MEDLINE

Kehoe, A. K., Torvik, V. I., Smalheiser, N. R. & Ross, M. B., Feb 10 2017, Proceedings of the 1st Workshop on Scholarly Web Mining, SWM 2017. Association for Computing Machinery, p. 49-56 8 p. (ACM International Conference Proceeding Series; vol. Part F127853).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Bins

Segmentation of publication records of authors from the Web

Zhang, W., Yu, C., Smalheiser, N. & Torvik, V., Oct 17 2006, Proceedings of the 22nd International Conference on Data Engineering, ICDE '06. 1 p. 1617488. (Proceedings - International Conference on Data Engineering; vol. 2006).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Websites

Classifiers

Semantics

Experiments

Editorial