Tauqeer Alam

2025

Comparative analysis of the Streptococcus pneumoniae competence development in vitro versus in vivo during pneumonia-derived sepsis

Chong, S. Y., Lew, S. Q., Alam, T., Gaulke, C. A. & Lau, G. W., 2025, In: Frontiers in Microbiology. 16, 1540511.

Research output: Contribution to journal › Article › peer-review

Open Access

2024

The Cryptosporidium signaling kinase CDPK5 plays an important role in male gametogenesis and parasite virulence

Nava, M. G., Szewczyk, J., Arrington, J. V., Alam, T. & Vinayak, S., Jun 25 2024, In: Cell Reports. 43, 6, 114263.

Research output: Contribution to journal › Article › peer-review

Open Access

Time-resolved RNA-seq analysis to unravel the in vivo competence induction by Streptococcus pneumoniae during pneumonia-derived sepsis

Oh, M. W., Lin, J., Chong, S. Y., Lew, S. Q., Alam, T. & Lau, G. W., Mar 2024, In: Microbiology Spectrum. 12, 3

Research output: Contribution to journal › Article › peer-review

Open Access

2020

Prophage-mediated disruption of genetic competence in staphylococcus pseudintermedius

Brooks, M. R., Padilla-Vélez, L., Khan, T. A., Qureshi, A. A., Pieper, J. B., Maddox, C. W. & Tauqeer Alam, M., 2020, In: mSystems. 5, 1, e00684-19.

Research output: Contribution to journal › Article › peer-review

Open Access

Staphylococcal Protein A (spa) Locus Is a Hot Spot for Recombination and Horizontal Gene Transfer in Staphylococcus pseudintermedius

Zukancic, A., Khan, M. A., Gurmen, S. J., Gliniecki, Q. M., Moritz-Kinkade, D. L., Maddox, C. W. & Alam, M. T., Sep 2020, In: mSphere. 5, 5, e00666-20.

Research output: Contribution to journal › Article › peer-review

Open Access

2019

Population Gene Introgression and High Genome Plasticity for the Zoonotic Pathogen Streptococcus agalactiae

Richards, V. P., Velsko, I. M., Alam, M. T., Zadoks, R. N., Manning, S. D., Pavinski Bitar, P. D., Hassler, H. B., Crestani, C., Springer, G. H., Probert, B. M., Town, C. D. & Stanhope, M. J., Nov 1 2019, In: Molecular biology and evolution. 36, 11, p. 2572-2590 19 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2017

Draft sequencing and assembly of the genome of the world's largest fish, the whale shark: Rhincodon typus Smith 1828

Read, T. D., Petit, R. A., Joseph, S. J., Alam, M. T., Weil, M. R., Ahmad, M., Bhimani, R., Vuong, J. S., Haase, C. P., Webb, D. H., Tan, M. & Dove, A. D. M., Jul 14 2017, In: BMC genomics. 18, 1, 532.

Research output: Contribution to journal › Article › peer-review

Open Access

2015

The geography of malaria genetics in the Democratic Republic of Congo: A complex and fragmented landscape

Carrel, M., Patel, J., Taylor, S. M., Janko, M., Mwandagalirwa, M. K., Tshefu, A. K., Escalante, A. A., McCollum, A., Alam, M. T., Udhayakumar, V., Meshnick, S. & Emch, M., May 1 2015, In: Social Science and Medicine. 133, p. 233-241 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Transmission and microevolution of USA300 MRSA in U.S. households: Evidence from whole-genome sequencing

Alam, M. T., Read, T. D., Petit, R. A., Boyle-Vavra, S., Miller, L. G., Eells, S. J., Daum, R. S. & David, M. Z., Mar 10 2015, In: mBio. 6, 2, e00054-15.

Research output: Contribution to journal › Article › peer-review

Open Access

USA300 and USA500 clonal lineages of Staphylococcus aureus do not produce a capsular polysaccharide due to conserved mutations in the cap5 locus

Boyle-Vavra, S., Li, X., Alam, M. T., Read, T. D., Sieth, J., Cywes-Bentley, C., Dobbins, G., David, M. Z., Kumar, N., Eells, S. J., Miller, L. G., Boxrud, D. J., Chambers, H. F., Lynfield, R., Lee, J. C. & Daum, R. S., Apr 7 2015, In: mBio. 6, 2, e02585-14.

Research output: Contribution to journal › Article › peer-review

Open Access

2014

Development of oxacillin resistance in a patient with recurrent Staphylococcus aureus bacteremia

Burd, E. M., Alam, M. T., Passalacqua, K. D., Kalokhe, A. S., Eaton, M. E., Satola, S. W., Kraft, C. S. & Read, T. D., Aug 2014, In: Journal of Clinical Microbiology. 52, 8, p. 3114-3117 4 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Dissecting vancomycin-intermediate resistance in staphylococcus aureus using genome-wide association

Alam, M. T., Petit, R. A., Crispell, E. K., Thornton, T. A., Conneely, K. N., Jiang, Y., Satola, S. W. & Read, T. D., May 2014, In: Genome biology and evolution. 6, 5, p. 1174-1185 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

IsdB-dependent hemoglobin binding is required for acquisition of heme by Staphylococcus aureus

Pishchany, G., Sheldon, J. R., Dickson, C. F., Alam, M. T., Read, T. D., Gell, D. A., Heinrichs, D. E. & Skaar, E. P., Jun 1 2014, In: Journal of Infectious Diseases. 209, 11, p. 1764-1772 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

The complete mitochondrial genome sequence of the world's largest fish, the whale shark (Rhincodon typus), and its comparison with those of related shark species

Alam, M. T., Petit, R. A., Read, T. D. & Dove, A. D. M., Apr 10 2014, In: Gene. 539, 1, p. 44-49 6 p.

Research output: Contribution to journal › Article › peer-review

2013

Efficacy of chloroquine for the treatment of uncomplicated Plasmodium falciparum malaria in Honduras

Torres, R. E. M., Banegas, E. I., Mendoza, M., Diaz, C., Bucheli, S. T. M., Fontecha, G. A., Alam, M. T., Goldman, I., Udhayakumar, V. & Zambrano, J. O. N., May 2013, In: American Journal of Tropical Medicine and Hygiene. 88, 5, p. 850-854 5 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Historical Shifts in Brazilian P. falciparum Population Structure and Drug Resistance Alleles

Griffing, S. M., Viana, G. M. R., Mixson-Hayden, T., Sridaran, S., Alam, M. T., de Oliveira, A. M., Barnwell, J. W., Escalante, A. A., Povoa, M. M. & Udhayakumar, V., Mar 15 2013, In: PloS one. 8, 3, e58984.

Research output: Contribution to journal › Article › peer-review

Open Access

Plasmodium falciparum sulfadoxine resistance is geographically and genetically clustered within the DR Congo

Taylor, S. M., Antonia, A. L., Parobek, C. M., Juliano, J. J., Janko, M., Emch, M., Alam, M. T., Udhayakumar, V., Tshefu, A. K. & Meshnick, S. R., Jan 30 2013, In: Scientific reports. 3, 1165.

Research output: Contribution to journal › Article › peer-review

Open Access

2012

Genetic variation in the plasmodium falciparum circumsporozoite protein in india and its relevance to RTS,S malaria vaccine

Zeeshan, M., Alam, M. T., Vinayak, S., Bora, H., Tyagi, R. K., Alam, M. S., Choudhary, V., Mittra, P., Lumb, V., Bharti, P. K., Udhayakumar, V., Singh, N., Jain, V., Singh, P. P. & Sharma, Y. D., Aug 17 2012, In: PloS one. 7, 8, e43430.

Research output: Contribution to journal › Article › peer-review

Open Access

2011

Selective sweeps and genetic lineages of Plasmodium falciparum drug -resistant alleles in Ghana

Alam, M. T., De Souza, D. K., Vinayak, S., Griffing, S. M., Poe, A. C., Duah, N. O., Ghansah, A., Asamoa, K., Slutsker, L., Wilson, M. D., Barnwell, J. W., Udhayakumar, V. & Koram, K. A., Jan 15 2011, In: Journal of Infectious Diseases. 203, 2, p. 220-227 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

South American plasmodium falciparum after the malaria eradication era: Clonal population expansion and survival of the fittest hybrids

Griffing, S. M., Mixson-Hayden, T., Sridaran, S., Alam, M. T., McCollum, A. M., Cabezas, C., Quezada, W. M., Barnwell, J. W., de Oliveira, A. M., Lucas, C., Arrospide, N., Escalante, A. A., Bacon, D. J. & Udhayakumar, V., Sep 16 2011, In: PloS one. 6, 9, e23486.

Research output: Contribution to journal › Article › peer-review

Open Access

Tracking origins and spread of sulfadoxine-resistant Plasmodium falciparum dhps alleles in Thailand

Alam, M. T., Vinayak, S., Congpuong, K., Wongsrichanalai, C., Satimai, W., Slutsker, L., Escalante, A. A., Barnwell, J. W. & Udhayakumar, V., Jan 2011, In: Antimicrobial Agents and Chemotherapy. 55, 1, p. 155-164 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2010

Multiple genetic backgrounds of the amplified plasmodium falciparum multidrug resistance (Pfrndr1) gene and selective sweep of 184F mutation in Cambodia

Vinayak, S., Alam, M. T., Sem, R., Shah, N. K., Susanti, A. I., Lim, P., Muth, S., Maguire, J. D., Rogers, W. O., Fandeur, T., Barnwell, J. W., Escalante, A. A., Wongsrichanalai, C., Ariey, F., Meshnick, S. R. & Udhayakumar, V., May 15 2010, In: Journal of Infectious Diseases. 201, 10, p. 1551-1560 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Origin and evolution of sulfadoxine resistant Plasmodium falciparum

Vinayak, S., Alam, T., Mixson-Hayden, T., McCollum, A. M., Sem, R., Shah, N. K., Lim, P., Muth, S., Rogers, W. O., Fandeur, T., Barnwell, J. W., Escalante, A. A., Wongsrichanalai, C., Ariey, F., Meshnick, S. R. & Udhayakumar, V., Mar 2010, In: PLoS pathogens. 6, 3, e1000830.

Research output: Contribution to journal › Article › peer-review

Open Access

Therapeutic efficacy of chloroquine and sequence variation in pfcrt gene among patients with falciparum malaria in central India

Bharti, P. K., Alam, M. T., Boxer, R., Shukla, M. M., Gautam, S. P., Sharma, Y. D. & Singh, N., Jan 2010, In: Tropical Medicine and International Health. 15, 1, p. 33-40 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2008

Cellular immune responses to recombinant Plasmodium vivax tryptophan-rich antigen (PvTRAg) among individuals exposed to vivax malaria

Alam, M. T., Bora, H., Mittra, P., Singh, N. & Sharma, Y. D., Jun 2008, In: Parasite Immunology. 30, 6-7, p. 379-383 5 p.

Research output: Contribution to journal › Article › peer-review

High immunogenecity and erythrocyte-binding activity in the tryptophan-rich domain (TRD) of the 74-kDa Plasmodium vivax alanine-tryptophan-rich antigen (PvATRAg74)

Alam, M. T., Bora, H., Singh, N. & Sharma, Y. D., Jul 23 2008, In: Vaccine. 26, 31, p. 3787-3794 8 p.

Research output: Contribution to journal › Article › peer-review

Plasmodium vivax: Sequence polymorphism and effect of natural selection at apical membrane antigen 1 (PvAMA1) among Indian population

Thakur, A., Alam, M. T., Bora, H., Kaur, P. & Sharma, Y. D., Aug 1 2008, In: Gene. 419, 1-2, p. 35-42 8 p.

Research output: Contribution to journal › Article › peer-review

The type and mysorensis forms of the Anopheles stephensi (Diptera: Culicidae) in India exhibit identical ribosomal DNA ITS2 and domain-3 sequences

Alam, M. T., Bora, H., Das, M. K. & Sharma, Y. D., Jun 2008, In: Parasitology Research. 103, 1, p. 75-80 6 p.

Research output: Contribution to journal › Article › peer-review

2007

Extensive genetic diversity in the Plasmodium falciparum Na ⁺/H⁺ exchanger 1 transporter protein implicated in quinine resistance

Vinayak, S., Alam, M. T., Upadhyay, M., Das, M. K., Dev, V., Singh, N., Dash, A. P. & Sharma, Y. D., Dec 2007, In: Antimicrobial Agents and Chemotherapy. 51, 12, p. 4508-4511 4 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Extensive heterozygosity at four microsatellite loci flanking Plasmodium vivax dihydrofolate reductase gene

Alam, M. T., Agarwal, R. & Sharma, Y. D., Jun 2007, In: Molecular and Biochemical Parasitology. 153, 2, p. 178-185 8 p.

Research output: Contribution to journal › Article › peer-review

Identification of two cryptic species in the Anopheles (Cellia) annularis complex using ribosomal DNA PCR-RFLP

Alam, M. T., Das, M. K., Dev, V., Ansari, M. A. & Sharma, Y. D., Apr 2007, In: Parasitology Research. 100, 5, p. 943-948 6 p.

Research output: Contribution to journal › Article › peer-review

PCR-RFLP method for the identification of four members of the Anopheles annularis group of mosquitoes (Diptera: Culicidae)

Alam, M. T., Das, M. K., Dev, V., Ansari, M. A. & Sharma, Y. D., Mar 2007, In: Transactions of the Royal Society of Tropical Medicine and Hygiene. 101, 3, p. 239-244 6 p.

Research output: Contribution to journal › Article › peer-review

Sequence diversity and natural selection at domain I of the apical membrane antigen 1 among Indian Plasmodium falciparum populations

Garg, S., Alam, M. T., Das, M. K., Dev, V., Kumar, A., Dash, A. P. & Sharma, Y. D., 2007, In: Malaria Journal. 6, 154.

Research output: Contribution to journal › Article › peer-review

Open Access

Similar trends of pyrimethamine resistance-associated mutations in Plasmodium vivax and P. falciparum

Alam, M. T., Bora, H., Bharti, P. K., Saifi, M. A., Das, M. K., Dev, V., Kumar, A., Singh, N., Dash, A. P., Das, B., Wajihullah & Sharma, Y. D., Mar 2007, In: Antimicrobial Agents and Chemotherapy. 51, 3, p. 857-863 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2006

Molecular identification of Anopheles (Cellia) sundaicus from the Andaman and Nicobar islands of India

Alam, M. T., Das, M. K., Ansari, M. A. & Sharma, Y. D., Jan 2006, In: Acta Tropica. 97, 1, p. 10-18 9 p.

Research output: Contribution to journal › Article › peer-review

2005

Identification, expression, localization and serological characterization of a tryptophan-rich antigen from the human malaria parasite Plasmodium vivax

Jalah, R., Sarin, R., Sud, N., Alam, M. T., Parikh, N., Das, T. K. & Sharma, Y. D., Aug 2005, In: Molecular and Biochemical Parasitology. 142, 2, p. 158-169 12 p.

Research output: Contribution to journal › Article › peer-review

Tauqeer Alam

Research output

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