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Research Output 1990 2019

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Review article
2016

A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity

Nguyen, N. P., Warnow, T., Pop, M. & White, B., Apr 20 2016, In : npj Biofilms and Microbiomes. 2, 16004.

Research output: Contribution to journalReview article

Cluster Analysis
Sequence Alignment
Microbiota
2014

Data access for the 1,000 Plants (1KP) project

Matasci, N., Hung, L. H., Yan, Z., Carpenter, E. J., Wickett, N. J., Mirarab, S., Nguyen, N., Warnow, T., Ayyampalayam, S., Barker, M., Burleigh, J. G., Gitzendanner, M. A., Wafula, E., Der, J. P., dePamphilis, C. W., Roure, B., Philippe, H., Ruhfel, B. R., Miles, N. W., Graham, S. W. & 24 others, Mathews, S., Surek, B., Melkonian, M., Soltis, D. E., Soltis, P. S., Rothfels, C., Pokorny, L., Shaw, J. A., DeGironimo, L., Stevenson, D. W., Villarreal, J. C., Chen, T., Kutchan, T. M., Rolf, M., Baucom, R. S., Deyholos, M. K., Samudrala, R., Tian, Z., Wu, X., Sun, X., Zhang, Y., Wang, J., Leebens-Mack, J. & Wong, G. K. S., Oct 27 2014, In : GigaScience. 3, 1, 17.

Research output: Contribution to journalReview article

Viridiplantae
Proteins
Transcriptome
Visualization
Pipelines
2006

Taking the first steps towards a standard for reporting on phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA)

Leebens-Mack, J., Vision, T., Brenner, E., Bowers, J. E., Cannon, S., Clement, M. J., Cunningham, C. W., DePamphilis, C., DeSalle, R., Doyle, J. J., Eisen, J. A., Gu, X., Harshman, J., Jansen, R. K., Kellogg, E. A., Koonin, E. V., Mishler, B. D., Philippe, H., Pires, J. C., Qiu, Y. L. & 8 others, Rhee, S. Y., Sjölander, K., Soltis, D. E., Soltis, P. S., Stevenson, D. W., Wall, K., Warnow, T. & Zmasek, C., Sep 4 2006, In : OMICS A Journal of Integrative Biology. 10, 2, p. 231-237 7 p.

Research output: Contribution to journalReview article

Phylogeny
Genes
Genome
Microarrays
Genomics
2005

A comparison of phylogenetic reconstruction methods on an Indo-European dataset

Nakhleh, L., Warnow, T., Ringe, D. & Evans, S. N., Aug 1 2005, In : Transactions of the Philological Society. 103, 2, p. 171-192 22 p.

Research output: Contribution to journalReview article

phylogeny
reconstruction
estimation procedure
language
linguistics