Tandy Warnow

Search results

• 2022

  Recent progress on methods for estimating and updating large phylogenies

  Zaharias, P. & Warnow, T., Oct 10 2022, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 377, 1861, 20210244.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Phylogeny 100%
  • Pipeline 96%
  • Heterogeneity 77%
  • phylogeny 47%
  • Datasets 26%
• 2021

  Multispecies Coalescent: Theory and Applications in Phylogenetics

  Mirarab, S., Nakhleh, L. & Warnow, T., 2021, In: Annual Review of Ecology, Evolution, and Systematics. 52, p. 247-268 22 p.

  Research output: Contribution to journal › Review article › peer-review

  • phylogenetics 100%
  • phylogeny 68%
  • mathematical theory 50%
  • gene 36%
  • horizontal gene transfer 34%
• 2016

  A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity

  Nguyen, N. P., Warnow, T., Pop, M. & White, B., Apr 20 2016, In: npj Biofilms and Microbiomes. 2, 16004.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • 16S Ribosomal RNA 100%
  • Cluster Analysis 86%
  • Sequence Alignment 58%
  • Microbiota 47%
• 2014

  Data access for the 1,000 Plants (1KP) project

  Matasci, N., Hung, L. H., Yan, Z., Carpenter, E. J., Wickett, N. J., Mirarab, S., Nguyen, N., Warnow, T., Ayyampalayam, S., Barker, M., Burleigh, J. G., Gitzendanner, M. A., Wafula, E., Der, J. P., dePamphilis, C. W., Roure, B., Philippe, H., Ruhfel, B. R., Miles, N. W., Graham, S. W., & 24 othersMathews, S., Surek, B., Melkonian, M., Soltis, D. E., Soltis, P. S., Rothfels, C., Pokorny, L., Shaw, J. A., DeGironimo, L., Stevenson, D. W., Villarreal, J. C., Chen, T., Kutchan, T. M., Rolf, M., Baucom, R. S., Deyholos, M. K., Samudrala, R., Tian, Z., Wu, X., Sun, X., Zhang, Y., Wang, J., Leebens-Mack, J. & Wong, G. K. S., Oct 27 2014, In: GigaScience. 3, 1, 17.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Viridiplantae 100%
  • Proteins 51%
  • Phylogeny 39%
  • Genes 26%
  • Transcriptome 25%
• 2006

  Taking the first steps towards a standard for reporting on phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA)

  Leebens-Mack, J., Vision, T., Brenner, E., Bowers, J. E., Cannon, S., Clement, M. J., Cunningham, C. W., DePamphilis, C., DeSalle, R., Doyle, J. J., Eisen, J. A., Gu, X., Harshman, J., Jansen, R. K., Kellogg, E. A., Koonin, E. V., Mishler, B. D., Philippe, H., Pires, J. C., Qiu, Y. L., & 8 othersRhee, S. Y., Sjölander, K., Soltis, D. E., Soltis, P. S., Stevenson, D. W., Wall, K., Warnow, T. & Zmasek, C., 2006, In: OMICS A Journal of Integrative Biology. 10, 2, p. 231-237 7 p.

  Research output: Contribution to journal › Review article › peer-review

  • Assert 100%
  • Phylogeny 76%
  • Microarrays 69%
  • Genome 21%
  • Genomics 16%
• 2005

  A comparison of phylogenetic reconstruction methods on an Indo-European dataset

  Nakhleh, L., Warnow, T., Ringe, D. & Evans, S. N., Aug 2005, In: Transactions of the Philological Society. 103, 2, p. 171-192 22 p.

  Research output: Contribution to journal › Review article › peer-review

  • Phylogeny 82%
  • Phylogenetics 76%
  • reconstruction 62%
  • Indo-European Family 38%
  • estimation procedure 31%