Tandy Warnow

Search results

• Data from: Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge

  Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, May 16 2019

  DOI: 10.13012/B2IDB-0569467_V2

  Dataset

• Using INC within Divide-and-Conquer Phylogeny Estimation - Datasets

  Le, T. (Creator), Sy, A. (Creator), Molloy, E. K. (Creator), Zhang, Q. (Creator), Rao, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jan 27 2019

  DOI: 10.13012/B2IDB-8518809_V1

  Dataset

• Data from: Accurate Large-scale Phylogeny-Aware Alignment using BAli-Phy

  Gupta, M. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 30 2021

  DOI: 10.13012/B2IDB-7863273_V1

  Dataset

• Data from "Re-evaluating Deep Neural Networks for Phylogeny Estimation: The issue of taxon sampling"

  Zaharias, P. (Creator), Grosshauser, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 24 2021

  DOI: 10.13012/B2IDB-8921156_V1

  Dataset

• INDELible simulated datesets with sequence length heterogeneity

  Warnow, T. (Creator) & Park, M. (Creator), University of Illinois Urbana-Champaign, Apr 6 2023

  DOI: 10.13012/B2IDB-0900513_V1

  Dataset

• Additional datasets (RNASim10k) for EMMA: A New Method for Computing Multiple Sequence Alignments given a Constraint Subset Alignment

  Shen, C. (Creator), Liu, B. (Creator), Williams, K. P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Sep 13 2023

  DOI: 10.13012/B2IDB-4194451_V1

  Dataset

• Data for Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees

  Liu, K. (Creator), Raghavan, S. (Creator), Nelesen, S. (Creator), Linder, C. R. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 19 2009

  DOI: 10.13012/B2IDB-5139418_V1

  Dataset

• Data For Well-Connected Communities In Real Networks.

  Park, M. (Creator), Tabatabaee, Y. (Creator), Warnow, T. (Creator) & Chacko, G. (Creator), University of Illinois Urbana-Champaign, Mar 16 2023

  DOI: 10.13012/B2IDB-0908742_V1

  Dataset

• Datasets from the study "OCTAL: Optimal Completion of Gene Trees in Polynomial Time"

  Christensen, S. (Creator), Molloy, E. K. (Creator), Vachaspati, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Feb 22 2018

  DOI: 10.13012/B2IDB-1616387_V1

  Dataset

• Data from TRACTION: Fast non-parametric improvement of estimated gene trees

  Christensen, S. (Creator), Molloy, E. K. (Creator), Vachaspati, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jul 29 2019

  DOI: 10.13012/B2IDB-1747658_V1

  Dataset

• MAGUS+eHMMs: Improved Multiple Sequence Alignment Accuracy for Fragmentary Sequences

  Shen, C. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 28 2021

  DOI: 10.13012/B2IDB-2419626_V1

  Dataset

• Data from: "Inferring Species Trees from Gene-Family with Duplication and Loss using Multi-Copy Gene-Family Tree Decomposition"

  Willson, J. (Creator), Roddur, M. S. (Creator), Baqiao, L. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, May 21 2021

  DOI: 10.13012/B2IDB-4050038_V1

  Dataset

• Data from Scalable Species Tree Inference with External Constraints

  Liu, B. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Nov 3 2021

  DOI: 10.13012/B2IDB-2566000_V1

  Dataset

• Seven ROSE datasets in high and low fragmentation conditions

  Shen, C. (Creator), Park, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Nov 19 2021

  DOI: 10.13012/B2IDB-6128941_V1

  Dataset

• The 16S.B.ALL dataset in 100-HF condition

  Shen, C. (Creator), Park, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Mar 25 2022

  DOI: 10.13012/B2IDB-6604429_V1

  Dataset

• Datasets for EMMA: A New Method for Computing Multiple Sequence Alignments given a Constraint Subset Alignment

  Shen, C. (Creator), Liu, B. (Creator), Williams, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 8 2022

  DOI: 10.13012/B2IDB-2567453_V1

  Dataset

• 5000-het: Dataset of Nucleotide Sequences with a Form of Evolutionary Sequence Length Heterogeneity

  Liu, B. (Creator), Shen, C. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 5 2022

  DOI: 10.13012/B2IDB-3974819_V1

  Dataset

• Data for SEPP: SATé-Enabled Phylogenetic Placement.

  Mirarab, S. (Creator), Ngyuen, N.-P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jul 1 2012

  DOI: 10.13012/B2IDB-9316702_V1

  Dataset

• Data for Taxonomic Identification and Phylogenetic Profiling

  Nguyen, N.-P. (Creator), Mirarab, S. (Creator), Bo, L. (Creator), Pop, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Oct 29 2014

  DOI: 10.13012/B2IDB-8783447_V1

  Dataset

• Data for SuperFine, DACTAL, and BeeTLe

  Swenson, M. S. (Creator), Suri, R. (Creator), Linder, C. R. (Creator), Warnow, T. (Creator), Nguyen, N.-P. (Creator), Mirarab, S. (Creator), Neves, D. T. (Creator), Sobral, J. L. (Creator), Pingali, K. (Creator), Nelesen, S. (Creator), Liu, K. (Creator) & Wang, L.-S. (Creator), University of Illinois Urbana-Champaign, Sep 20 2011

  DOI: 10.13012/B2IDB-2952208_V1

  Dataset

• Data for 16S and 23S rRNA alignments

  Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Sep 16 2017

  DOI: 10.13012/B2IDB-1614388_V1

  Dataset

• Data for Ultra-Large Alignments Using Phylogeny-Aware Profiles

  Nguyen, N.-P. (Creator), Mirarab, S. (Creator), Kumar, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Dec 16 2015

  DOI: 10.13012/B2IDB-3174395_V1

  Dataset

• HIPPI Dataset

  Nguyen, N.-P. (Creator), Nute, M. (Creator), Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 16 2016

  DOI: 10.13012/B2IDB-6795126_V1

  Dataset

• Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss

  Legried, B. (Creator), Molloy, E. K. (Creator), Warnow, T. (Creator) & Roch, S. (Creator), University of Illinois Urbana-Champaign, Jan 22 2020

  DOI: 10.13012/B2IDB-2626814_V2

  Dataset

• Disjoint Tree Mergers for Large-Scale Maximum LikelihoodTree Estimation

  Park, M. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 11 2021

  DOI: 10.13012/B2IDB-7008049_V1

  Dataset