Steven J Clough

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Research Output

  • 43 Article
  • 1 Conference contribution
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Article
2020

Genome-wide expression of low temperature response genes in Rosa hybrida L.

dos Reis, M. V., Rouhana, L. V., Sadeque, A., Koga, L., Clough, S. J., Calla, B., Paiva, P. D. D. O. & Korban, S. S., Jan 2020, In : Plant Physiology and Biochemistry. 146, p. 238-248 11 p.

Research output: Contribution to journalArticle

2019

Diatraea saccharalis history of colonization in the Americas. The case for human-mediated dispersal

Francischini, F. J. B., Cordeiro, E. M. G., de Campos, J. B., Alves-Pereira, A., Gomes Viana, J. P., Wu, X., Wei, W., Brown, P., Joyce, A., Murua, G., Fogliata, S., Clough, S. J. & Zucchi, M. I., 2019, In : PloS one. 14, 7, e0220031.

Research output: Contribution to journalArticle

Open Access

Patterns of Genome-Wide Variation, Population Differentiation and SNP Discovery of the Red Banded Stink Bug (Piezodorus guildinii)

Zucchi, M. I., Cordeiro, E. M. G., Allen, C., Novello, M., Viana, J. P. G., Brown, P. J., Manjunatha, S., Omoto, C., Pinheiro, J. B. & Clough, S. J., Dec 1 2019, In : Scientific reports. 9, 1, 14480.

Research output: Contribution to journalArticle

Open Access

Population genomics of the neotropical brown stink bug, euschistus heros: The most important emerging insect pest to soybean in brazil

Zucchi, M. I., Cordeiro, E. M. G., Wu, X., Lamana, L. M., Brown, P. J., Manjunatha, S., Viana, J. P. G., Omoto, C., Pinheiro, J. B. & Clough, S. J., Jan 1 2019, In : Frontiers in Genetics. 10, OCT, 1035.

Research output: Contribution to journalArticle

Open Access
2018

A novel receptor-like kinase involved in fungal pathogen defence in Arabidopsis thaliana

Ray, J., Yang, X., Kong, F., Guo, T., Deng, F., Clough, S. & Ramonell, K., Aug 2018, In : Journal of Phytopathology. 166, 7-8, p. 506-515 10 p.

Research output: Contribution to journalArticle

Heritability of agronomic traits correlated with reduced stink bug damage in an F2:3 soybean population derived from IAC-100

Da Fonseca Santos, M., Möller, M., Clough, S. J. & Pinheiro, J. B., Jan 2 2018, In : Journal of Crop Improvement. 32, 1, p. 1-18 18 p.

Research output: Contribution to journalArticle

Two colors, one species: The case of melissodes nigroaenea (Apidae: Eucerini), an important pollinator of cotton fields in Brazil

Grando, C., Amon, N. D., Clough, S. J., Guo, N., Wei, W., Azevedo, P., López-Uribe, M. M. & Zucchi, M. I., Oct 2018, In : Sociobiology. 65, 4, p. 645-653 9 p.

Research output: Contribution to journalArticle

2017

Genome-wide association mapping of resistance to a Brazilian isolate of Sclerotinia sclerotiorum in soybean genotypes mostly from Brazil

Wei, W., Mesquita, A. C. O., Figueiró, A. D. A., Wu, X., Manjunatha, S., Wickland, D. P., Hudson, M. E., Juliatti, F. C. & Clough, S. J., Nov 7 2017, In : BMC genomics. 18, 1, 849.

Research output: Contribution to journalArticle

Morphological and molecular characterization of Brazilian populations of Diatraea saccharalis (Fabricius, 1794) (Lepidoptera: Crambidae) and the evolutionary relationship among species of Diatraea Guilding

Francischini, F. J. B., De Campos, J. B., Alves-Pereira, A., Gomes Viana, J. P., Grinter, C. C., Clough, S. J. & Zucchi, M. I., Nov 2017, In : PloS one. 12, 11, e0186266.

Research output: Contribution to journalArticle

2016

Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining

Ghandchi, F. P., Caetano-Anolles, G., Clough, S. J. & Ort, D. R., Sep 2016, In : PloS one. 11, 9, e0162327.

Research output: Contribution to journalArticle

Resistance of soybean genotypes to Sclerotinia sclerotiorum isolates in different incubation environments

Castro, L. H. S., Figueiró, A. A., Nogueira, A. P. O., Clough, S. J. & Juliatti, F. C., Nov 21 2016, In : Genetics and Molecular Research. 15, 4, gmr15049061.

Research output: Contribution to journalArticle

2015

The role of invertases in plant compensatory responses to simulated herbivory

Siddappaji, M. H., Scholes, D. R., Krishnankutty, S. M., Calla, B., Clough, S. J., Zielinski, R. E. & Paige, K. N., Jan 1 2015, In : BMC Plant Biology. 15, 1, 278.

Research output: Contribution to journalArticle

2014

Genomic evaluation of oxalate-degrading transgenic soybean in response to Sclerotinia sclerotiorum infection

Calla, B., Blahut-Beatty, L., Koziol, L., Zhang, Y., Neece, D. J., Carbajulca, D., Garcia, A., Simmonds, D. H. & Clough, S. J., Aug 2014, In : Molecular Plant Pathology. 15, 6, p. 563-575 13 p.

Research output: Contribution to journalArticle

Transcriptome analyses suggest a disturbance of iron homeostasis in soybean leaves during white mould disease establishment

Calla, B., Blahut-Beatty, L., Koziol, L., Simmonds, D. H. & Clough, S. J., Aug 2014, In : Molecular Plant Pathology. 15, 6, p. 576-588 13 p.

Research output: Contribution to journalArticle

2013

Effect of Fusarium virguliforme phytotoxin on soybean gene expression suggests a role in multidimensional defence

Radwan, O., Li, M., Calla, B., Li, S., Hartman, G. L. & Clough, S. J., Apr 1 2013, In : Molecular Plant Pathology. 14, 3, p. 293-307 15 p.

Research output: Contribution to journalArticle

2012

14-3-3 proteins SGF14C and SGF14L play critical roles during soybean nodulation

Radwan, O., Wu, X., Govindarajulu, M., Libault, M., Neece, D. J., Oh, M. H., Berg, R. H., Stacey, G., Taylor, C. G., Huber, S. C. & Clough, S. J., Dec 1 2012, In : Plant physiology. 160, 4, p. 2125-2136 12 p.

Research output: Contribution to journalArticle

Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max

Zabala, G., Campos, E., Varala, K. K., Bloomfield, S., Jones, S. I., Win, H., Tuteja, J. H., Calla, B., Clough, S. J., Hudson, M. & Vodkin, L. O., Oct 2 2012, In : BMC Plant Biology. 12, 177.

Research output: Contribution to journalArticle

Genome-wide identification of genes regulated by the rcs phosphorelay system in Erwinia amylovora

Wang, D., Qi, M., Calla, B., Korban, S. S., Clough, S. J., Cock, P. J. A., Sundin, G. W., Toth, I. & Zhao, Y., Jan 1 2012, In : Molecular Plant-Microbe Interactions. 25, 1, p. 6-17 12 p.

Research output: Contribution to journalArticle

2011

The orphan gene ybjN conveys pleiotropic effects on multicellular behavior and survival of Escherichia coli

Wang, D., Calla, B., Vimolmangkang, S., Wu, X., Korban, S. S., Huber, S. C., Clough, S. J. & Zhao, Y., Sep 27 2011, In : PloS one. 6, 9, e25293.

Research output: Contribution to journalArticle

Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome

Radwan, O., Liu, Y. & Clough, S. J., Aug 1 2011, In : Molecular Plant-Microbe Interactions. 24, 8, p. 958-972 15 p.

Research output: Contribution to journalArticle

2010

Biotic stress globally downregulates photosynthesis genes

Bilgin, D. D., Zavala, J. A., Zhu, J., Clough, S. J., Ort, D. R. & Delucia, E. H., Oct 1 2010, In : Plant, Cell and Environment. 33, 10, p. 1597-1613 17 p.

Research output: Contribution to journalArticle

Complete transcriptome of the soybean root hair cell, a single-cell model, and its alteration in response to Bradyrhizobium japonicum infection

Libault, M., Farmer, A., Brechenmacher, L., Drnevich, J., Langley, R. J., Bilgin, D. D., Radwan, O., Neece, D. J., Clough, S. J., May, G. D. & Stacey, G., Feb 2010, In : Plant physiology. 152, 2, p. 541-552 12 p.

Research output: Contribution to journalArticle

2009

A robust plant rna isolation method suitable for affymetrix genechip analysis and quantitative real-time rt-pcr

Bilgin, D. D., Delucia, E. H. & Clough, S. J., Mar 2009, In : Nature Protocols. 4, 3, p. 333-340 8 p.

Research output: Contribution to journalArticle

2008

A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis

Wan, J., Zhang, X. C., Neece, D., Ramonell, K. M., Clough, S., Kim, S. Y., Stacey, M. G. & Stacey, G., Feb 2008, In : Plant Cell. 20, 2, p. 471-481 11 p.

Research output: Contribution to journalArticle

Elevated ozone alters soybean-virus interaction

Bilgin, D. D., Aldea, M., O'Neill, B. F., Benitez, M., Li, M., Clough, S. J. & DeLucia, E. H., Oct 1 2008, In : Molecular Plant-Microbe Interactions. 21, 10, p. 1297-1308 12 p.

Research output: Contribution to journalArticle

Soybean defense responses to the soybean aphid

Li, Y., Zou, J., Li, M., Bilgin, D. D., Vodkin, L. O., Hartman, G. L. & Clough, S. J., Jul 1 2008, In : New Phytologist. 179, 1, p. 185-195 11 p.

Research output: Contribution to journalArticle

Transcription profiling of soybean nodulation by Bradyrhizobium japonicum

Brechenmacher, L., Kim, M. Y., Benitez, M., Li, M., Joshi, T., Calla, B., Mei, P. L., Libault, M., Vodkin, L. O., Xu, D., Lee, S. H., Clough, S. J. & Stacey, G., May 1 2008, In : Molecular Plant-Microbe Interactions. 21, 5, p. 631-645 15 p.

Research output: Contribution to journalArticle

Transcriptome response to glyphosate in sensitive and resistant soybean

Zhu, J., Patzoldt, W. L., Shealy, R. T., Vodkin, L. O., Clough, S. J. & Tranel, P. J., Aug 13 2008, In : Journal of Agricultural and Food Chemistry. 56, 15, p. 6355-6363 9 p.

Research output: Contribution to journalArticle

2006

Transcriptome changes in the phenylpropanoid pathway of Glycine max in response to Pseudomonas syringae infection

Zabala, G., Zou, J., Tuteja, J., Gonzalez, D. O., Clough, S. J. & Vodkin, L. O., Nov 3 2006, In : BMC Plant Biology. 6, 26.

Research output: Contribution to journalArticle

2005

Expression profiling soybean response to Pseudomonas syringae reveals new defense-related genes and rapid HR-specific downregulation of photosynthesis

Zou, J., Rodriguez-Zas, S., Aldea, M., Li, M., Zhu, J., Gonzalez, D. O., Vodkin, L. O., DeLucia, E. & Clough, S. J., Nov 1 2005, In : Molecular Plant-Microbe Interactions. 18, 11, p. 1161-1174 14 p.

Research output: Contribution to journalArticle

Floral dip: agrobacterium-mediated germ line transformation.

Clough, S. J., 2005, In : Methods in molecular biology (Clifton, N.J.). 286, p. 91-102 12 p.

Research output: Contribution to journalArticle

2004

Features of a 103-kb gene-rich region in soybean include an inverted perfect repat cluster of CHS genes comprising the I locus

Clough, S. J., Tuteja, J. H., Li, M., Marek, L. F., Shoemaker, R. C. & Vodkin, L. O., Oct 1 2004, In : Genome. 47, 5, p. 819-831 13 p.

Research output: Contribution to journalArticle

Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant

Vodkin, L. O., Khanna, A., Shealy, R., Clough, S. J., Gonzalez, D. O., Philip, R., Zabala, G., Thibaud-Nissen, F., Sidarous, M., Strömvik, M. V., Shoop, E., Schmidt, C., Retzel, E., Erpelding, J., Shoemaker, R. C., Rodriguez-Huete, A. M., Polacco, J. C., Coryell, V., Keim, P., Gong, G. & 3 others, Liu, L., Pardinas, J. & Schweitzer, P., Sep 29 2004, In : BMC genomics. 5, 73.

Research output: Contribution to journalArticle

Tissue-specific gene silencing mediated by a naturally occurring chalcone synthase gene cluster in Glycine max

Tuteja, J. H., Clough, S. J., Chan, W. C. & Vodkin, L. O., Apr 1 2004, In : Plant Cell. 16, 4, p. 819-835 17 p.

Research output: Contribution to journalArticle

2000

A second T-region of the soybean-supervirulent chrysopine-type Ti plasmid pTiChry5, and construction of a fully disarmed vir helper plasmid

Palanichelvam, K., Oger, P., Clough, S. J., Cha, C., Bent, A. F. & Farrand, S. K., Jan 1 2000, In : Molecular Plant-Microbe Interactions. 13, 10, p. 1081-1091 11 p.

Research output: Contribution to journalArticle

Female reproductive tissues are the primary target of Agrobacterium-mediated transformation by the Arabidopsis floral-dip method

Desfeux, C., Clough, S. J. & Bent, A. F., Jul 2000, In : Plant physiology. 123, 3, p. 895-904 10 p.

Research output: Contribution to journalArticle

Identification of arabidopsis mutants exhibiting an altered hypersensitive response in gene-for-gene disease resistance

Yu, I. C., Fengler, K. A., Clough, S. J. & Bent, A. F., Mar 2000, In : Molecular Plant-Microbe Interactions. 13, 3, p. 277-286 10 p.

Research output: Contribution to journalArticle

The Arabidopsis dnd1 "defense, no death" gene encodes a mutated cyclic nucleotide-gated ion channel

Clough, S. J., Fengler, K. A., Yu, I. C., Lippok, B., Smith, R. K. & Bent, A. F., Aug 1 2000, In : Proceedings of the National Academy of Sciences of the United States of America. 97, 16, p. 9323-9328 6 p.

Research output: Contribution to journalArticle

1998

Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana

Clough, S. J. & Bent, A. F., Dec 1 1998, In : Plant Journal. 16, 6, p. 735-743 9 p.

Research output: Contribution to journalArticle

1997

A two-component system in Ralstonia (Pseudomonas) solanacearum modulates production of PhcA-regulated virulence factors in response to 3- hydroxypalmitic acid methyl ester

Clough, S. J., Lee, K. E., Schell, M. A. & Denny, T. P., Jun 1997, In : Journal of bacteriology. 179, 11, p. 3639-3648 10 p.

Research output: Contribution to journalArticle

Differential expression of virulence genes and motility in Ralstonia (Pseudomonas) solanacearum during exponential growth

Clough, S. J., Flavier, A. B., Schell, M. A. & Denny, T. P., Mar 1997, In : Applied and Environmental Microbiology. 63, 3, p. 844-850 7 p.

Research output: Contribution to journalArticle

Identification of 3-hydroxypalmitic acid methyl ester as a novel autoregulator controlling virulence in Ralstonia solanacearum

Flavier, A. B., Clough, S. J., Schell, M. A. & Denny, T. P., Nov 22 1997, In : Molecular Microbiology. 26, 2, p. 251-259 9 p.

Research output: Contribution to journalArticle

1994

Evidence for involvement of a volatile extracellular factor in Pseudomonas solanacearum virulence gene expression

Clough, S. J., Schell, M. A. & Denny, T. P., Jan 1 1994, In : Molecular Plant-Microbe Interactions. 7, 5, p. 621-630 10 p.

Research output: Contribution to journalArticle