Steven J Clough

19942019
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Research Output 1994 2019

  • 41 Article
  • 1 Conference contribution
2019

Diatraea saccharalis history of colonization in the Americas. The case for human-mediated dispersal

Francischini, F. J. B., Cordeiro, E. M. G., de Campos, J. B., Alves-Pereira, A., Gomes Viana, J. P., Wu, X., Wei, W., Brown, P., Joyce, A., Murua, G., Fogliata, S., Clough, S. J. & Zucchi, M. I., Jan 1 2019, In : PloS one. 14, 7, e0220031.

Research output: Contribution to journalArticle

Open Access
Diatraea saccharalis
History
Saccharum
Genetic Structures
Genes

Patterns of Genome-Wide Variation, Population Differentiation and SNP Discovery of the Red Banded Stink Bug (Piezodorus guildinii)

Zucchi, M. I., Cordeiro, E. M. G., Allen, C., Novello, M., Viana, J. P. G., Brown, P. J., Manjunatha, S., Omoto, C., Pinheiro, J. B. & Clough, S. J., Dec 1 2019, In : Scientific reports. 9, 1, 14480.

Research output: Contribution to journalArticle

Open Access
Single Nucleotide Polymorphism
Brazil
Gene Flow
Genetic Structures
Genetic Selection
2018

A novel receptor-like kinase involved in fungal pathogen defence in Arabidopsis thaliana

Ray, J., Yang, X., Kong, F., Guo, T., Deng, F., Clough, S. J. & Ramonell, K., Aug 2018, In : Journal of Phytopathology. 166, 7-8, p. 506-515 10 p.

Research output: Contribution to journalArticle

Plant Immunity
Arabidopsis
phosphotransferases (kinases)
Chitin
Phosphotransferases

Heritability of agronomic traits correlated with reduced stink bug damage in an F 2:3 soybean population derived from IAC-100

Da Fonseca Santos, M., Möller, M., Clough, S. J. & Pinheiro, J. B., Jan 2 2018, In : Journal of Crop Improvement. 32, 1, p. 1-18 18 p.

Research output: Contribution to journalArticle

Pentatomidae
heritability
filling period
Soybeans
agronomic traits

Two colors, one species: The case of melissodes nigroaenea (Apidae: Eucerini), an important pollinator of cotton fields in Brazil

Grando, C., Amon, N. D., Clough, S. J., Guo, N., Wei, W., Azevedo, P., López-Uribe, M. M. & Zucchi, M. I., Oct 2018, In : Sociobiology. 65, 4, p. 645-653 9 p.

Research output: Contribution to journalArticle

Melissodes
Apidae
pollinating insects
cotton
Brazil
2017

Genome-wide association mapping of resistance to a Brazilian isolate of Sclerotinia sclerotiorum in soybean genotypes mostly from Brazil

Wei, W., Mesquita, A. C. O., Figueiró, A. D. A., Wu, X., Manjunatha, S., Wickland, D. P., Hudson, M., Juliatti, F. C. & Clough, S. J., Nov 7 2017, In : BMC genomics. 18, 1, 849.

Research output: Contribution to journalArticle

Ascomycota
Soybeans
Brazil
Genotype
Genome

Morphological and molecular characterization of Brazilian populations of Diatraea saccharalis (Fabricius, 1794) (Lepidoptera: Crambidae) and the evolutionary relationship among species of Diatraea Guilding

Francischini, F. J. B., De Campos, J. B., Alves-Pereira, A., Gomes Viana, J. P., Grinter, C. C., Clough, S. J. & Zucchi, M. I., Nov 2017, In : PloS one. 12, 11, e0186266.

Research output: Contribution to journalArticle

Diatraea
Diatraea saccharalis
Saccharum
Crambidae
Lepidoptera
2016

Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining

Ghandchi, F. P., Caetano-Anolles, G., Clough, S. J. & Ort, D. R., Sep 2016, In : PloS one. 11, 9, e0162327.

Research output: Contribution to journalArticle

Oxygenases
Chlorophyll
oxygenases
genomics
chlorophyll

Resistance of soybean genotypes to Sclerotinia sclerotiorum isolates in different incubation environments

Castro, L. H. S., Figueiró, A. A., Nogueira, A. P. O., Clough, S. J. & Juliatti, F. C., Nov 21 2016, In : Genetics and Molecular Research. 15, 4, gmr15049061.

Research output: Contribution to journalArticle

Ascomycota
Soybeans
Genotype
Fungi
Growth
2015

The role of invertases in plant compensatory responses to simulated herbivory

Siddappaji, M. H., Scholes, D. R., Krishnankutty, S. M., Calla, B., Clough, S. J., Zielinski, R. E. & Paige, K. N., Jan 1 2015, In : BMC Plant Biology. 15, 1, 278.

Research output: Contribution to journalArticle

beta-fructofuranosidase
herbivores
pentoses
knockout mutants
glucose-6-phosphate 1-dehydrogenase
2014

Genomic evaluation of oxalate-degrading transgenic soybean in response to Sclerotinia sclerotiorum infection

Calla, B., Blahut-Beatty, L., Koziol, L., Zhang, Y., Neece, D. J., Carbajulca, D., Garcia, A., Simmonds, D. H. & Clough, S. J., Aug 2014, In : Molecular Plant Pathology. 15, 6, p. 563-575 13 p.

Research output: Contribution to journalArticle

Ascomycota
oxalate oxidase
Oxalates
Sclerotinia sclerotiorum
oxalates

Transcriptome analyses suggest a disturbance of iron homeostasis in soybean leaves during white mould disease establishment

Calla, B., Blahut-Beatty, L., Koziol, L., Simmonds, D. H. & Clough, S. J., Aug 2014, In : Molecular Plant Pathology. 15, 6, p. 576-588 13 p.

Research output: Contribution to journalArticle

Oxalic Acid
oxalic acid
homeostasis
Gene Expression Profiling
Soybeans
2013

Effect of Fusarium virguliforme phytotoxin on soybean gene expression suggests a role in multidimensional defence

Radwan, O., Li, M., Calla, B., Li, S., Hartman, G. L. & Clough, S. J., Apr 1 2013, In : Molecular Plant Pathology. 14, 3, p. 293-307 15 p.

Research output: Contribution to journalArticle

phytotoxins
Fusarium
Soybeans
gene expression
soybean
2012

14-3-3 proteins SGF14C and SGF14L play critical roles during soybean nodulation

Radwan, O., Wu, X., Govindarajulu, M., Libault, M., Neece, D. J., Oh, M. H., Berg, R. H., Stacey, G., Taylor, C. G., Huber, S. C. & Clough, S. J., Dec 1 2012, In : Plant physiology. 160, 4, p. 2125-2136 12 p.

Research output: Contribution to journalArticle

14-3-3 Proteins
nodulation
Soybeans
soybeans
proteins

Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max

Zabala, G., Campos, E., Varala, K. K., Bloomfield, S., Jones, S. I., Win, H., Tuteja, J. H., Calla, B., Clough, S. J., Hudson, M. & Vodkin, L. O., Oct 2 2012, In : BMC Plant Biology. 12, 177.

Research output: Contribution to journalArticle

Glycine max
RNA
microRNA
soybeans
small interfering RNA

Genome-wide identification of genes regulated by the rcs phosphorelay system in Erwinia amylovora

Wang, D., Qi, M., Calla, B., Korban, S. S., Clough, S. J., Cock, P. J. A., Sundin, G. W., Toth, I. & Zhao, Y., Jan 1 2012, In : Molecular Plant-Microbe Interactions. 25, 1, p. 6-17 12 p.

Research output: Contribution to journalArticle

Erwinia amylovora
Genome
Pyrus
genome
pears
2011

Regulatory genes and environmental regulation of amylovoran biosynthesis in Erwinia amylovora

Wang, D. P., Clough, S. J., Zhao, Y., Sundin, G. W., Korban, S. S. & Toth, I. K., May 13 2011, XII International Workshop on Fire Blight. International Society for Horticultural Science, p. 195-202 8 p. (Acta Horticulturae; vol. 896).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

environmental law
Erwinia amylovora
regulator genes
biosynthesis
temperature

The orphan gene ybjN conveys pleiotropic effects on multicellular behavior and survival of Escherichia coli

Wang, D., Calla, B., Vimolmangkang, S., Wu, X., Korban, S. S., Huber, S. C., Clough, S. J. & Zhao, Y., Sep 27 2011, In : PloS one. 6, 9, e25293.

Research output: Contribution to journalArticle

Escherichia coli
Genes
mutants
Acid resistance
acid tolerance

Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome

Radwan, O., Liu, Y. & Clough, S. J., Aug 1 2011, In : Molecular Plant-Microbe Interactions. 24, 8, p. 958-972 15 p.

Research output: Contribution to journalArticle

Fusarium
Sudden Death
Soybeans
soybeans
death
2010

Biotic stress globally downregulates photosynthesis genes

Bilgin, D. D., Zavala, J. A., Zhu, J., Clough, S. J., Ort, D. R. & Delucia, E. H., Oct 1 2010, In : Plant, Cell and Environment. 33, 10, p. 1597-1613 17 p.

Research output: Contribution to journalArticle

Photosynthesis
biotic stress
Down-Regulation
photosynthesis
Genes

Complete transcriptome of the soybean root hair cell, a single-cell model, and its alteration in response to Bradyrhizobium japonicum infection

Libault, M., Farmer, A., Brechenmacher, L., Drnevich, J., Langley, R. J., Bilgin, D. D., Radwan, O., Neece, D. J., Clough, S. J., May, G. D. & Stacey, G., Feb 1 2010, In : Plant physiology. 152, 2, p. 541-552 12 p.

Research output: Contribution to journalArticle

Bradyrhizobium
Bradyrhizobium japonicum
root hairs
Transcriptome
Soybeans
2009

A robust plant rna isolation method suitable for affymetrix genechip analysis and quantitative real-time rt-pcr

Bilgin, D. D., Delucia, E. H. & Clough, S. J., Mar 2009, In : Nature Protocols. 4, 3, p. 333-340 8 p.

Research output: Contribution to journalArticle

Plant RNA
RNA
Real-Time Polymerase Chain Reaction
Throughput
Plant Preparations
2008

A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis

Wan, J., Zhang, X. C., Neece, D., Ramonell, K. M., Clough, S. J., Kim, S. Y., Stacey, M. G. & Stacey, G., Feb 1 2008, In : Plant Cell. 20, 2, p. 471-481 11 p.

Research output: Contribution to journalArticle

Chitin
chitin
Arabidopsis
phosphotransferases (kinases)
Phosphotransferases

Elevated ozone alters soybean-virus interaction

Bilgin, D. D., Aldea, M., O'Neill, B. F., Benitez, M., Li, M., Clough, S. J. & Delucia, E. H., Oct 1 2008, In : Molecular Plant-Microbe Interactions. 21, 10, p. 1297-1308 12 p.

Research output: Contribution to journalArticle

Ozone
Soybeans
ozone
Soybean mosaic virus
soybeans

Soybean defense responses to the soybean aphid

Li, Y., Zou, J., Li, M., Bilgin, D. D., Vodkin, L. O., Hartman, G. L. & Clough, S. J., Jul 1 2008, In : New Phytologist. 179, 1, p. 185-195 11 p.

Research output: Contribution to journalArticle

Aphis glycines
Aphids
Soybeans
soybeans
Aphidoidea

Transcription profiling of soybean nodulation by Bradyrhizobium japonicum

Brechenmacher, L., Kim, M. Y., Benitez, M., Li, M., Joshi, T., Calla, B., Mei, P. L., Libault, M., Vodkin, L. O., Xu, D., Lee, S. H., Clough, S. J. & Stacey, G., May 1 2008, In : Molecular Plant-Microbe Interactions. 21, 5, p. 631-645 15 p.

Research output: Contribution to journalArticle

Bradyrhizobium
Nitrogen Fixation
Bradyrhizobium japonicum
nodulation
Soybeans

Transcriptome response to glyphosate in sensitive and resistant soybean

Zhu, J., Patzoldt, W. L., Shealy, R. T., Vodkin, L. O., Clough, S. J. & Tranel, P. J., Aug 13 2008, In : Journal of Agricultural and Food Chemistry. 56, 15, p. 6355-6363 9 p.

Research output: Contribution to journalArticle

glyphosate
Transcriptome
Soybeans
transcriptome
soybeans
2006

Transcriptome changes in the phenylpropanoid pathway of Glycine max in response to Pseudomonas syringae infection

Zabala, G., Zou, J., Tuteja, J., Gonzalez, D. O., Clough, S. J. & Vodkin, L. O., Nov 3 2006, In : BMC Plant Biology. 6, 26.

Research output: Contribution to journalArticle

Pseudomonas syringae
Pseudomonas Infections
phenylpropanoids
Transcriptome
Soybeans
2005
Pseudomonas syringae
Photosynthesis
Soybeans
Down-Regulation
photosynthesis

Floral dip: agrobacterium-mediated germ line transformation.

Clough, S. J., 2005, In : Methods in molecular biology (Clifton, N.J.). 286, p. 91-102 12 p.

Research output: Contribution to journalArticle

Agrobacterium
Germ Cells
Arabidopsis
Genes
Agrobacterium tumefaciens
2004

Features of a 103-kb gene-rich region in soybean include an inverted perfect repat cluster of CHS genes comprising the I locus

Clough, S. J., Tuteja, J. H., Li, M., Marek, L. F., Shoemaker, R. C. & Vodkin, L. O., Oct 1 2004, In : Genome. 47, 5, p. 819-831 13 p.

Research output: Contribution to journalArticle

Soybeans
Genes
Spermidine Synthase
Galactosidases
Subtilisin

Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant

Vodkin, L. O., Khanna, A., Shealy, R., Clough, S. J., Gonzalez, D. O., Philip, R., Zabala, G., Thibaud-Nissen, F., Sidarous, M., Strömvik, M. V., Shoop, E., Schmidt, C., Retzel, E., Erpelding, J., Shoemaker, R. C., Rodriguez-Huete, A. M., Polacco, J. C., Coryell, V., Keim, P., Gong, G. & 3 others, Liu, L., Pardinas, J. & Schweitzer, P., Sep 29 2004, In : BMC genomics. 5, 73.

Research output: Contribution to journalArticle

Oligonucleotide Array Sequence Analysis
Soybeans
Complementary DNA
Clone Cells
Genetic Association Studies

Tissue-specific gene silencing mediated by a naturally occurring chalcone synthase gene cluster in Glycine max

Tuteja, J. H., Clough, S. J., Chan, W. C. & Vodkin, L. O., Apr 1 2004, In : Plant Cell. 16, 4, p. 819-835 17 p.

Research output: Contribution to journalArticle

naringenin-chalcone synthase
Gene Silencing
gene silencing
Multigene Family
Soybeans
2000

A second T-region of the soybean-supervirulent chrysopine-type Ti plasmid pTiChry5, and construction of a fully disarmed vir helper plasmid

Palanichelvam, K., Oger, P., Clough, S. J., Cha, C., Bent, A. F. & Farrand, S. K., Jan 1 2000, In : Molecular Plant-Microbe Interactions. 13, 10, p. 1081-1091 11 p.

Research output: Contribution to journalArticle

Plant Tumor-Inducing Plasmids
Soybeans
opines
plasmids
Plasmids

Female reproductive tissues are the primary target of Agrobacterium-mediated transformation by the Arabidopsis floral-dip method

Desfeux, C., Clough, S. J. & Bent, A. F., Jul 2000, In : Plant physiology. 123, 3, p. 895-904 10 p.

Research output: Contribution to journalArticle

Agrobacterium
Arabidopsis
Glucuronidase
Ovule
gynoecium

Identification of arabidopsis mutants exhibiting an altered hypersensitive response in gene-for-gene disease resistance

Yu, I. C., Fengler, K. A., Clough, S. J. & Bent, A. F., Mar 2000, In : Molecular Plant-Microbe Interactions. 13, 3, p. 277-286 10 p.

Research output: Contribution to journalArticle

Disease Resistance
hypersensitive response
Arabidopsis
disease resistance
Pseudomonas syringae

The Arabidopsis dnd1 "defense, no death" gene encodes a mutated cyclic nucleotide-gated ion channel

Clough, S. J., Fengler, K. A., Yu, I. C., Lippok, B., Smith, R. K. & Bent, A. F., Aug 1 2000, In : Proceedings of the National Academy of Sciences of the United States of America. 97, 16, p. 9323-9328 6 p.

Research output: Contribution to journalArticle

Cyclic Nucleotide-Gated Cation Channels
Arabidopsis
Salicylic Acid
Disease Resistance
Genes
1998

Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana

Clough, S. J. & Bent, A. F., Dec 1 1998, In : Plant Journal. 16, 6, p. 735-743 9 p.

Research output: Contribution to journalArticle

Agrobacterium
Arabidopsis
Arabidopsis thaliana
Vacuum
Surface-Active Agents
1997

A two-component system in Ralstonia (Pseudomonas) solanacearum modulates production of PhcA-regulated virulence factors in response to 3- hydroxypalmitic acid methyl ester

Clough, S. J., Lee, K. E., Schell, M. A. & Denny, T. P., Jun 1997, In : Journal of bacteriology. 179, 11, p. 3639-3648 10 p.

Research output: Contribution to journalArticle

Ralstonia solanacearum
Virulence Factors
Esters
Operon
Cellulase

Differential expression of virulence genes and motility in Ralstonia (Pseudomonas) solanacearum during exponential growth

Clough, S. J., Flavier, A. B., Schell, M. A. & Denny, T. P., Mar 1997, In : Applied and Environmental Microbiology. 63, 3, p. 844-850 7 p.

Research output: Contribution to journalArticle

Ralstonia solanacearum
Ralstonia
motility
virulence
Virulence

Identification of 3-hydroxypalmitic acid methyl ester as a novel autoregulator controlling virulence in Ralstonia solanacearum

Flavier, A. B., Clough, S. J., Schell, M. A. & Denny, T. P., Nov 22 1997, In : Molecular Microbiology. 26, 2, p. 251-259 9 p.

Research output: Contribution to journalArticle

Ralstonia solanacearum
Virulence
Esters
Fatty Acids
Acyl-Butyrolactones
1994

Evidence for involvement of a volatile extracellular factor in Pseudomonas solanacearum virulence gene expression

Clough, S. J., Schell, M. A. & Denny, T. P., Jan 1 1994, In : Molecular Plant-Microbe Interactions. 7, 5, p. 621-630 10 p.

Research output: Contribution to journalArticle

Ralstonia solanacearum
Gene expression
Virulence
Gene Expression