Stephen R Downie

2024

Circumscription of the East Asia clade (Apiaceae subfamily Apioideae) and the taxonomic placements of several problematic genera

Zhou, J., Wang, X., Zhou, S., Niu, J., Yue, J., Liu, Z. & Downie, S. R., Mar 2024, In: Plant Diversity. 46, 2, p. 206-218 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Phylogenomics and the rise of the angiosperms

Zuntini, A. R., Carruthers, T., Maurin, O., Bailey, P. C., Leempoel, K., Brewer, G. E., Epitawalage, N., Françoso, E., Gallego-Paramo, B., McGinnie, C., Negrão, R., Roy, S. R., Simpson, L., Toledo Romero, E., Barber, V. M. A., Botigué, L., Clarkson, J. J., Cowan, R. S., Dodsworth, S. & Johnson, M. G. & 259 others, Kim, J. T., Pokorny, L., Wickett, N. J., Antar, G. M., DeBolt, L., Gutierrez, K., Hendriks, K. P., Hoewener, A., Hu, A. Q., Joyce, E. M., Kikuchi, I. A. B. S., Larridon, I., Larson, D. A., de Lírio, E. J., Liu, J. X., Malakasi, P., Przelomska, N. A. S., Shah, T., Viruel, J., Allnutt, T. R., Ameka, G. K., Andrew, R. L., Appelhans, M. S., Arista, M., Ariza, M. J., Arroyo, J., Arthan, W., Bachelier, J. B., Bailey, C. D., Barnes, H. F., Barrett, M. D., Barrett, R. L., Bayer, R. J., Bayly, M. J., Biffin, E., Biggs, N., Birch, J. L., Bogarín, D., Borosova, R., Bowles, A. M. C., Boyce, P. C., Bramley, G. L. C., Briggs, M., Broadhurst, L., Brown, G. K., Bruhl, J. J., Bruneau, A., Buerki, S., Burns, E., Byrne, M., Cable, S., Calladine, A., Callmander, M. W., Cano, Á., Cantrill, D. J., Cardinal-McTeague, W. M., Carlsen, M. M., Carruthers, A. J. A., de Castro Mateo, A., Chase, M. W., Chatrou, L. W., Cheek, M., Chen, S., Christenhusz, M. J. M., Christin, P. A., Clements, M. A., Coffey, S. C., Conran, J. G., Cornejo, X., Couvreur, T. L. P., Cowie, I. D., Csiba, L., Darbyshire, I., Davidse, G., Davies, N. M. J., Davis, A. P., van Dijk, K. J., Downie, S. R., Duretto, M. F., Duvall, M. R., Edwards, S. L., Eggli, U., Erkens, R. H. J., Escudero, M., de la Estrella, M., Fabriani, F., Fay, M. F., Ferreira, P. D. L., Ficinski, S. Z., Fowler, R. M., Frisby, S., Fu, L., Fulcher, T., Galbany-Casals, M., Gardner, E. M., German, D. A., Giaretta, A., Gibernau, M., Gillespie, L. J., González, C. C., Goyder, D. J., Graham, S. W., Grall, A., Green, L., Gunn, B. F., Gutiérrez, D. G., Hackel, J., Haevermans, T., Haigh, A., Hall, J. C., Hall, T., Harrison, M. J., Hatt, S. A., Hidalgo, O., Hodkinson, T. R., Holmes, G. D., Hopkins, H. C. F., Jackson, C. J., James, S. A., Jobson, R. W., Kadereit, G., Kahandawala, I. M., Kainulainen, K., Kato, M., Kellogg, E. A., King, G. J., Klejevskaja, B., Klitgaard, B. B., Klopper, R. R., Knapp, S., Koch, M. A., Leebens-Mack, J. H., Lens, F., Leon, C. J., Léveillé-Bourret, É., Lewis, G. P., Li, D. Z., Li, L., Liede-Schumann, S., Livshultz, T., Lorence, D., Lu, M., Lu-Irving, P., Luber, J., Lucas, E. J., Luján, M., Lum, M., Macfarlane, T. D., Magdalena, C., Mansano, V. F., Masters, L. E., Mayo, S. J., McColl, K., McDonnell, A. J., McDougall, A. E., McLay, T. G. B., McPherson, H., Meneses, R. I., Merckx, V. S. F. T., Michelangeli, F. A., Mitchell, J. D., Monro, A. K., Moore, M. J., Mueller, T. L., Mummenhoff, K., Munzinger, J., Muriel, P., Murphy, D. J., Nargar, K., Nauheimer, L., Nge, F. J., Nyffeler, R., Orejuela, A., Ortiz, E. M., Palazzesi, L., Peixoto, A. L., Pell, S. K., Pellicer, J., Penneys, D. S., Perez-Escobar, O. A., Persson, C., Pignal, M., Pillon, Y., Pirani, J. R., Plunkett, G. M., Powell, R. F., Prance, G. T., Puglisi, C., Qin, M., Rabeler, R. K., Rees, P. E. J., Renner, M., Roalson, E. H., Rodda, M., Rogers, Z. S., Rokni, S., Rutishauser, R., de Salas, M. F., Schaefer, H., Schley, R. J., Schmidt-Lebuhn, A., Shapcott, A., Al-Shehbaz, I., Shepherd, K. A., Simmons, M. P., Simões, A. O., Simões, A. R. G., Siros, M., Smidt, E. C., Smith, J. F., Snow, N., Soltis, D. E., Soltis, P. S., Soreng, R. J., Sothers, C. A., Starr, J. R., Stevens, P. F., Straub, S. C. K., Struwe, L., Taylor, J. M., Telford, I. R. H., Thornhill, A. H., Tooth, I., Trias-Blasi, A., Udovicic, F., Utteridge, T. M. A., Del Valle, J. C., Verboom, G. A., Vonow, H. P., Vorontsova, M. S., de Vos, J. M., Al-Wattar, N., Waycott, M., Welker, C. A. D., White, A. J., Wieringa, J. J., Williamson, L. T., Wilson, T. C., Wong, S. Y., Woods, L. A., Woods, R., Worboys, S., Xanthos, M., Yang, Y., Zhang, Y. X., Zhou, M. Y., Zmarzty, S., Zuloaga, F. O., Antonelli, A., Bellot, S., Crayn, D. M., Grace, O. M., Kersey, P. J., Leitch, I. J., Sauquet, H., Smith, S. A., Eiserhardt, W. L., Forest, F. & Baker, W. J., May 23 2024, In: Nature. 629, 8013, p. 843-850 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2022

A systematic study of North American Angelica species (Apiaceae) based on nrDNA ITS and cpDNA sequences and fruit morphology

Liao, C. Y., Gao, Q., Katz-Downie, D. S. & Downie, S. R., Jul 2022, In: Journal of Systematics and Evolution. 60, 4, p. 789-808 20 p.

Research output: Contribution to journal › Article › peer-review

Systematics of the Iranian genera Aphanopleura, Demavendia, Haussknechtia, Psammogeton, and Zeravschania (Apiaceae tribe Pimpinelleae)

Mousavi, S. S., Mozaffarian, V., Mummenhoff, K., Downie, S. R. & Zarre, S., Feb 2022, In: Plant Systematics and Evolution. 308, 1, 2.

Research output: Contribution to journal › Article › peer-review

The chloroplast genomes of Sanicula (Apiaceae): plastome structure, comparative analyses and phylogenetic relationships

Yang, C., Yao, X. Y., Chen, Z. X., Downie, S. R. & Wang, Q. Z., Aug 2022, In: Nordic Journal of Botany. 2022, 8, e03549.

Research output: Contribution to journal › Article › peer-review

2021

A higher-level nuclear phylogenomic study of the carrot family (Apiaceae)

Clarkson, J. J., Zuntini, A. R., Maurin, O., Downie, S. R., Plunkett, G. M., Nicolas, A. N., Smith, J. F., Feist, M. A. E., Gutierrez, K., Malakasi, P., Bailey, P., Brewer, G. E., Epitawalage, N., Zmarzty, S., Forest, F. & Baker, W. J., Jul 2021, In: American journal of botany. 108, 7, p. 1252-1269 18 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Resolving species boundaries in a recent radiation with the Angiosperms353 probe set: the Lomatium packardiae/L. anomalum clade of the L. triternatum (Apiaceae) complex

Ottenlips, M. V., Mansfield, D. H., Buerki, S., Feist, M. A. E., Downie, S. R., Dodsworth, S., Forest, F., Plunkett, G. M. & Smith, J. F., Jul 2021, In: American journal of botany. 108, 7, p. 1217-1233 17 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2020

An updated lineage-based tribal classification of Apiaceae subfamily Apioideae with special focus on Iranian genera

Mousavi, S., Mozaffarian, V., Mummenhoff, K., Downie, S. R. & Zarre, S., 2020, In: Systematics and Biodiversity. 19, 1, p. 89-109 21 p.

Research output: Contribution to journal › Article › peer-review

2019

A comparative analysis of complete plastid genomes from Prangos fedtschenkoi and Prangos lipskyi (Apiaceae)

Mustafina, F. U., Yi, D. K., Choi, K., Shin, C. H., Tojibaev, K. S. & Downie, S. R., Jan 2019, In: Ecology and Evolution. 9, 1, p. 364-377 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Assembling and analysis of sanicula orthacantha chloroplast genome

Chen, Z., Yao, X., Downie, S. R. & Wang, Q., Apr 2019, In: Biodiversity Science. 27, 4, p. 366-372 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Evolutionary shifts in fruit dispersal syndromes in Apiaceae tribe Scandiceae

Wojewódzka, A., Baczyński, J., Banasiak, Ł., Downie, S. R., Czarnocka-Cieciura, A., Gierek, M., Frankiewicz, K. & Spalik, K., May 1 2019, In: Plant Systematics and Evolution. 305, 5, p. 401-414 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Floral organogenesis in three members of the tribe delphinieae (Ranunculaceae)

Chang, H., Downie, S. R., Peng, H. & Sun, F., Nov 2019, In: Plants. 8, 11, 493.

Research output: Contribution to journal › Article › peer-review

Open Access

Laserocarpum, a new genus of Apiaceae endemic to Greece

Spalik, K., Wojewódzka, A., Constantinidis, T., Downie, S. R., Gierek, M. & Banasiak, Ł., 2019, In: Acta Societatis Botanicorum Poloniae. 88, 3, 3635.

Research output: Contribution to journal › Article › peer-review

Open Access

2018

Genome-wide searches and molecular analyses highlight the unique evolutionary path of flavone synthase i (FNSI) in Apiaceae

Wang, Q. Z., Downie, S. R., Chen, Z. X. & McIntyre, C. L., 2018, In: Genome. 61, 2, p. 103-109 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Rampant polyphyly in the Arracacia clade (Apiaceae) and an assessment of the phylogenetic utility of 20 noncoding plastid loci

Danderson, C. A., Downie, S. R. & Hermann, M., Jan 2018, In: Molecular Phylogenetics and Evolution. 118, p. 286-305 20 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Try Tri again? Resolving species boundaries in the Lomatium triternatum (Apiaceae) complex

Smith, J. F., Mansfield, D. H., Stevens, M., Sosa, E., Feist, M. A. E., Downie, S. R., Plunkett, G. M. & Darrach, M., May 2018, In: Journal of Systematics and Evolution. 56, 3, p. 218-230 13 p.

Research output: Contribution to journal › Article › peer-review

2017

The Phylogenetic Significance of Fruit Anatomical and Micromorphological Structures in Chinese Heracleum Species and Related Taxa (Apiaceae)

Liu, M. & Downie, S. R., 2017, In: Systematic Botany. 42, 2, p. 313-325 13 p.

Research output: Contribution to journal › Article › peer-review

2016

A taxonomic study of the genus Hellenocarum H. Wolff (Umbelliferae-apioideae) based on morphology, fruit anatomy, and molecular data

Zakharova, E. A., Kljuykov, E. V., Degtjareva, G. V., Samigullin, T. H., Ukrainskaya, U. A. & Downie, S. R., 2016, In: Turkish Journal of Botany. 40, 2, p. 176-193 18 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Development of expressed sequence tag-simple sequence repeat markers for genetic characterization and population structure analysis of Praxelis clematidea (Asteraceae)

Wang, Q. Z., Huang, M., Downie, S. R. & Chen, Z. X., May 23 2016, In: Genetics and Molecular Research. 15, 2

Research output: Contribution to journal › Article › peer-review

Open Access

Pastinaca erzincanensis (Apiaceae), A New Species from Eastern Turkey and Its Phylogenetic Position within Tordylieae

Menemen, Y., Kandemir, A. & Downie, S. R., Nov 2016, In: Annales Botanici Fennici. 53, 5-6, p. 373-382 10 p.

Research output: Contribution to journal › Article › peer-review

The role of the Southern Hemisphere in the evolutionary history of Apiaceae, a mostly north temperate plant family

Calviño, C. I., Teruel, F. E. & Downie, S. R., Feb 1 2016, In: Journal of Biogeography. 43, 2, p. 398-409 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2015

A comparative analysis of whole plastid genomes from the apiales: Expansion and contraction of the inverted repeat, mitochondrial to plastid transfer of DNA, and identification of highly divergent noncoding regions

Downie, S. R. & Jansen, R. K., 2015, In: Systematic Botany. 40, 1, p. 336-351 16 p.

Research output: Contribution to journal › Article › peer-review

Genetic diversity and structure of the noxious alien grass Praxelis clematidea in southern China

Wang, Q., Huang, M., Downie, S. R., Chen, Z. & Chen, Y., Apr 1 2015, In: Biochemical Systematics and Ecology. 59, p. 183-189 7 p.

Research output: Contribution to journal › Article › peer-review

Patterns of Genetic Diversity in the Globally Invasive Species Wild Parsnip (Pastinaca sativa)

Jogesh, T., Peery, R., Downie, S. R. & Berenbaum, M. R., Oct 1 2015, In: Invasive Plant Science and Management. 8, 4, p. 415-429 15 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2014

Identification of species in the angiosperm family Apiaceae using DNA barcodes

Liu, J., Shi, L., Han, J., Li, G., Lu, H., Hou, J., Zhou, X., Meng, F. & Downie, S. R., Nov 1 2014, In: Molecular ecology resources. 14, 6, p. 1231-1238 8 p.

Research output: Contribution to journal › Article › peer-review

Molecular phylogenetics of Pimpinella and allied genera (Apiaceae), with emphasis on Chinese native species, inferred from nrDNA ITS and cpDNA intron sequence data

Wang, Z. X., Downie, S. R., Tan, J. B., Liao, C. Y., Yu, Y. & He, X. J., Oct 1 2014, In: Nordic Journal of Botany. 32, 5, p. 642-657 16 p.

Research output: Contribution to journal › Article › peer-review

Phylogenetic analysis reveals multiple cases of morphological parallelism and taxonomic polyphyly in lomatium (Apiaceae)

George, E. E., Mansfield, D. H., Smith, J. F., Hartman, R. L., Downie, S. R. & Hinchliff, C. E., May 2014, In: Systematic Botany. 39, 2, p. 662-675 14 p.

Research output: Contribution to journal › Article › peer-review

Recurrent short-distance dispersal explains wide distributions of hydrophytic umbellifers (Apiaceae tribe Oenantheae)

Spalik, K., Banasiak, L., Feist, M. A. E. & Downie, S. R., Aug 2014, In: Journal of Biogeography. 41, 8, p. 1559-1571 13 p.

Research output: Contribution to journal › Article › peer-review

2013

Dispersal patterns in space and time: A case study of apiaceae subfamily apioideae

Banasiak, Ł., Piwczyński, M., Uliński, T., Downie, S. R., Watson, M. F., Shakya, B. & Spalik, K., Jul 2013, In: Journal of Biogeography. 40, 7, p. 1324-1335 12 p.

Research output: Contribution to journal › Article › peer-review

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

Ming, R., VanBuren, R., Liu, Y., Yang, M., Han, Y., Li, L. T., Zhang, Q., Kim, M. J., Schatz, M. C., Campbell, M., Li, J., Bowers, J. E., Tang, H., Lyons, E., Ferguson, A. A., Narzisi, G., Nelson, D. R., Blaby-Haas, C. E., Gschwend, A. R. & Jiao, Y. & 51 others, Der, J. P., Zeng, F., Han, J., Min, X. J., Hudson, K. A., Singh, R., Grennan, A. K., Karpowicz, S. J., Watling, J. R., Ito, K., Robinson, S. A., Hudson, M. E., Yu, Q., Mockler, T. C., Carroll, A., Zheng, Y., Sunkar, R., Jia, R., Chen, N., Arro, J., Wai, C. M., Wafula, E., Spence, A., Han, Y., Xu, L., Zhang, J., Peery, R., Haus, M. J., Xiong, W., Walsh, J. A., Wu, J., Wang, M. L., Zhu, Y. J., Paull, R. E., Britt, A. B., Du, C., Downie, S. R., Schuler, M. A., Michael, T. P., Long, S. P., Ort, D. R., William Schopf, J., Gang, D. R., Jiang, N., Yandell, M., dePamphilis, C. W., Merchant, S. S., Paterson, A. H., Buchanan, B. B., Li, S. & Shen-Miller, J., May 10 2013, In: Genome biology. 14, 5, R41.

Research output: Contribution to journal › Article › peer-review

Open Access

New insights into the phylogeny of angelica and its allies (apiaceae) with emphasis on east Asian species, inferred from nrDNA, cpDNA, and morphological evidence

Liao, C., Downie, S. R., Li, Q., Yu, Y., He, X. & Zhou, B., Feb 2013, In: Systematic Botany. 38, 1, p. 266-281 16 p.

Research output: Contribution to journal › Article › peer-review

Siculosciadium, a new monotypic genus of Apiaceae from Sicily

Brullo, C., Brullo, S., Downie, S. R., Danderson, C. A. & Del Galdo, G. G., Jul 2013, In: Annals of the Missouri Botanical Garden. 99, 1, p. 1-18 18 p.

Research output: Contribution to journal › Article › peer-review

2012

Historical biogeography of the Angelica group (Apiaceae tribe Selineae) inferred from analyses of nrDNA and cpDNA sequences

Liao, C. Y., Downie, S. R., Yu, Y. & He, X. J., May 2012, In: Journal of Systematics and Evolution. 50, 3, p. 206-217 12 p.

Research output: Contribution to journal › Article › peer-review

Revised generic delimitations for Oxypolis and Ptilimnium (Apiaceae) based on leaf morphology, comparative fruit anatomy, and phylogenetic analysis of nuclear rDNA ITS and cpDNA trnQ-trnK intergenic spacer sequence data

Feist, M. A. E., Downie, S. R., Magee, A. R. & Liu, M. R., Apr 2012, In: Taxon. 61, 2, p. 402-418 17 p.

Research output: Contribution to journal › Article › peer-review

2011

A phylogenetic and biogeographic study of the genus Lilaeopsis (Apiaceae Tribe Oenantheae)

Bone, T. S., Downie, S. R., Affolter, J. M. & Spalik, K., Jul 2011, In: Systematic Botany. 36, 3, p. 789-805 17 p.

Research output: Contribution to journal › Article › peer-review

Phylogeny and biogeography of Chinese Heracleum (Apiaceae tribe Tordylieae) with comments on their fruit morphology

Yu, Y., Downie, S. R., He, X., Deng, X. & Yan, L., Oct 2011, In: Plant Systematics and Evolution. 296, 3-4, p. 179-203 25 p.

Research output: Contribution to journal › Article › peer-review

2010

Phylogenetic analyses of morphological and molecular data reveal major clades within the perennial, endemic western North American Apiaceae subfamily Apioideae

Sun, F. J. & Downie, S. R., Mar 2010, In: Journal of the Torrey Botanical Society. 137, 2, p. 133-156 24 p.

Research output: Contribution to journal › Article › peer-review

Phylogenetic position of African and Malagasy Pimpinella species and related genera (Apiaceae, Pimpinelleae)

Magee, A. R., van Wyk, B. E., Tilney, P. M. & Downie, S. R., Sep 2010, In: Plant Systematics and Evolution. 288, 3-4, p. 201-211 11 p.

Research output: Contribution to journal › Article › peer-review

2009

A taxonomic revision of Capnophyllum (Apiaceae: Apioideae)

Magee, A. R., van Wyk, B. E., Tilney, P. M. & Downie, S. R., Apr 2009, In: South African Journal of Botany. 75, 2, p. 283-291 9 p.

Research output: Contribution to journal › Article › peer-review

Billburttia, a new genus of Apiaceae (tribe Apieae) endemic to Madagascar

Magee, A. R., van Wyk, B. E., Tilney, P. M., Sales, F., Hedge, I. & Downie, S. R., 2009, In: Plant Systematics and Evolution. 283, 3, p. 237-245 9 p.

Research output: Contribution to journal › Article › peer-review

Generic delimitations and relationships of the Cape genera Capnophyllum, Dasispermum, and Sonderina, the North African genera Krubera and Stoibrax, and a new monotypic genus of the subfamily Apioideae (Apiaceae)

Magee, A. R., van Wyk, B. E., Tilney, P. M. & Downie, S. R., Jul 2009, In: Systematic Botany. 34, 3, p. 580-594 15 p.

Research output: Contribution to journal › Article › peer-review

Generic delimitations within the Sium alliance (Apiaceae tribe Oenantheae) inferred from cpDNA rps16-5′trnK ^(UUU) and nrDNA ITS sequences

Spalik, K., Downie, S. R. & Watson, M. F., Aug 2009, In: Taxon. 58, 3, p. 735-748 14 p.

Research output: Contribution to journal › Article › peer-review

Molecular systematics of angelica and allied genera (apiaceae) from the hengduan mountains of China based on nrDNA ITS sequences: Phylogenetic affinities and biogeographic implications

Feng, T., Downie, S. R., Yu, Y., Zhang, X., Chen, W., He, X. & Liu, S., Jul 2009, In: Journal of Plant Research. 122, 4, p. 403-414 12 p.

Research output: Contribution to journal › Article › peer-review

Phylogenetic relationships in the genus Lichtensteinia (Apiaceae) based on morphological, anatomical and DNA sequence data

Tilney, P. M., Van Wyk, B. E., Downie, S. R. & Calviño, C. I., Jan 2009, In: South African Journal of Botany. 75, 1, p. 64-82 19 p.

Research output: Contribution to journal › Article › peer-review

Pseudoridolfia, nouveau genre d'Apiaceae découvert au Maroc

Reduron, J. P., Mathez, J., Downie, S. R., Danderson, C. A. & Ostroumova, T., 2009, In: Acta Botanica Gallica. 156, 3, p. 487-500 14 p.

Research output: Contribution to journal › Article › peer-review

Towards a more robust molecular phylogeny of Chinese Apiaceae subfamily Apioideae: Additional evidence from nrDNA ITS and cpDNA intron (rpl16 and rps16) sequences

Zhou, J., Gong, X., Downie, S. R. & Peng, H., Oct 2009, In: Molecular Phylogenetics and Evolution. 53, 1, p. 56-68 13 p.

Research output: Contribution to journal › Article › peer-review

Stephen R Downie

Research output

Search results