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Article
2020

Genomic regions influencing aggressive behavior in honey bees are defined by colony allele frequencies

Avalos, A., Fang, M., Pan, H., Ramirez Lluch, A., Lipka, A. E., Zhao, S. D., Giray, T., Robinson, G. E., Zhang, G. & Hudson, M. E., Jul 6 2020, In : Proceedings of the National Academy of Sciences.

Research output: Contribution to journalArticle

Nonparametric false discovery rate control for identifying simultaneous signals

Zhao, S. D. & Nguyen, Y. T., Jan 1 2020, In : Electronic Journal of Statistics. 14, 1, p. 110-142 33 p.

Research output: Contribution to journalArticle

Open Access
2019

Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge

Saul, M. C., Blatti, C., Yang, W., Bukhari, S. A., Shpigler, H. Y., Troy, J. M., Seward, C. H., Sloofman, L., Chandrasekaran, S., Bell, A. M., Stubbs, L., Robinson, G. E., Zhao, S. D. & Sinha, S., Jan 2019, In : Genes, Brain and Behavior. 18, 1, p. e12502 e12502.

Research output: Contribution to journalArticle

2018

A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models

Tabe-Bordbar, S., Emad, A., Zhao, S. D. & Sinha, S., Dec 1 2018, In : Scientific reports. 8, 1, 6620.

Research output: Contribution to journalArticle

A simple and fast method for computing the Poisson binomial distribution function

Biscarri, W., Zhao, S. D. & Brunner, R. J., Jun 2018, In : Computational Statistics and Data Analysis. 122, p. 92-100 9 p.

Research output: Contribution to journalArticle

Genetic Reduction in Left Ventricular Protein Kinase C-α and Adverse Ventricular Remodeling in Human Subjects

Hu, R., Morley, M. P., Brandimarto, J., Tucker, N. R., Parsons, V. A., Zhao, S. D., Meder, B., Katus, H. A., Rühle, F., Stoll, M., Villard, E., Cambien, F., Lin, H., Smith, N. L., Felix, J. F., Vasan, R. S., van der Harst, P., Newton-Cheh, C., Li, J., Kim, C. E. & 10 others, Hakonarson, H., Hannenhalli, S., Ashley, E. A., Moravec, C. S., Tang, W. H. W., Maillet, M., Molkentin, J. D., Ellinor, P. T., Margulies, K. B. & Cappola, T. P., Mar 1 2018, In : Circulation. Genomic and precision medicine. 11, 3, p. e001901

Research output: Contribution to journalArticle

Open Access

Integrated Analysis of Genetic Ancestry and Genomic Alterations across Cancers

Yuan, J., Hu, Z., Mahal, B. A., Zhao, S. D., Kensler, K. H., Pi, J., Hu, X., Zhang, Y., Wang, Y., Jiang, J., Li, C., Zhong, X., Montone, K. T., Guan, G., Tanyi, J. L., Fan, Y., Xu, X., Morgan, M. A., Long, M., Zhang, Y. & 5 others, Zhang, R., Sood, A. K., Rebbeck, T. R., Dang, C. V. & Zhang, L., Oct 8 2018, In : Cancer Cell. 34, 4, p. 549-560.e9

Research output: Contribution to journalArticle

More accurate semiparametric regression in pharmacogenomics

Rong, Y., Zhao, S. D., Zhu, J., Yuan, W., Cheng, W. & Li, Y., 2018, In : Statistics and its Interface. 11, 4, p. 573-580 8 p.

Research output: Contribution to journalArticle

2017

Combining Biomarkers with EMR Data to Identify Patients in Different Phases of Sepsis

Taneja, I., Reddy, B., Damhorst, G., Dave Zhao, S., Hassan, U., Price, Z., Jensen, T., Ghonge, T., Patel, M., Wachspress, S., Winter, J., Rappleye, M., Smith, G., Healey, R., Ajmal, M., Khan, M., Patel, J., Rawal, H., Sarwar, R., Soni, S. & 6 others, Anwaruddin, S., Davis, B., Kumar, J., White, K., Bashir, R. & Zhu, R., Dec 1 2017, In : Scientific reports. 7, 1, 10800.

Research output: Contribution to journalArticle

Deep evolutionary conservation of autism-related genes

Shpigler, H. Y., Saul, M. C., Corona, F., Block, L., Cash Ahmed, A., Zhao, S. D. & Robinson, G. E., Sep 5 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 36, p. 9653-9658 6 p.

Research output: Contribution to journalArticle

Integrative genetic risk prediction using non-parametric empirical Bayes classification

Zhao, S. D., Jun 2017, In : Biometrics. 73, 2, p. 582-592 11 p.

Research output: Contribution to journalArticle

Optimal detection of weak positive latent dependence between two sequences of multiple tests

Zhao, S. D., Cai, T. T. & Li, H., Aug 2017, In : Journal of Multivariate Analysis. 160, p. 169-184 16 p.

Research output: Contribution to journalArticle

Sparse Simultaneous Signal Detection for Identifying Genetically Controlled Disease Genes

Zhao, S. D., Cai, T. T., Cappola, T. P., Margulies, K. B. & Li, H., Jul 3 2017, In : Journal of the American Statistical Association. 112, 519, p. 1032-1046 15 p.

Research output: Contribution to journalArticle

Temporal dynamics of neurogenomic plasticity in response to social interactions in male threespined sticklebacks

Bukhari, S. A., Saul, M. C., Seward, C. H., Zhang, H., Bensky, M., James, N., Zhao, S. D., Chandrasekaran, S., Stubbs, L. & Bell, A. M., Jul 2017, In : PLoS genetics. 13, 7, e1006840.

Research output: Contribution to journalArticle

Transcriptional regulatory dynamics drive coordinated metabolic and neural response to social challenge in mice

Saul, M. C., Seward, C. H., Troy, J. M., Zhang, H., Sloofman, L. G., Lu, X., Weisner, P. A., Caetano-Anolles, D., Sun, H., Zhao, S. D., Chandrasekaran, S., Sinha, S. & Stubbs, L., Jun 2017, In : Genome Research. 27, 6, p. 959-972 14 p.

Research output: Contribution to journalArticle

2015

Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers

Yan, X., Hu, Z., Feng, Y., Hu, X., Yuan, J., Zhao, S. D., Zhang, Y., Yang, L., Shan, W., He, Q., Fan, L., Kandalaft, L. E., Tanyi, J. L., Li, C., Yuan, C. X., Zhang, D., Yuan, H., Hua, K., Lu, Y., Katsaros, D. & 10 others, Huang, Q., Montone, K., Fan, Y., Coukos, G., Boyd, J., Sood, A. K., Rebbeck, T., Mills, G. B., Dang, C. V. & Zhang, L., Oct 12 2015, In : Cancer Cell. 28, 4, p. 529-540 12 p., 2143.

Research output: Contribution to journalArticle

Genetic sharing and heritability of paediatric age of onset autoimmune diseases

Li, Y. R., Zhao, S. D., Li, J., Bradfield, J. P., Mohebnasab, M., Steel, L., Kobie, J., Abrams, D. J., Mentch, F. D., Glessner, J. T., Guo, Y., Wei, Z., Connolly, J. J., Cardinale, C. J., Bakay, M., Li, D., Maggadottir, S. M., Thomas, K. A., Qui, H., Chiavacci, R. M. & 43 others, Kim, C. E., Wang, F., Snyder, J., Flatø, B., Førre, O., Denson, L. A., Thompson, S. D., Becker, M. L., Guthery, S. L., Latiano, A., Perez, E., Resnick, E., Strisciuglio, C., Staiano, A., Miele, E., Silverberg, M. S., Lie, B. A., Punaro, M., Russell, R. K., Wilson, D. C., Dubinsky, M. C., Monos, D. S., Annese, V., Munro, J. E., Wise, C., Chapel, H., Cunningham-Rundles, C., Orange, J. S., Behrens, E. M., Sullivan, K. E., Kugathasan, S., Griffiths, A. M., Satsangi, J., Grant, S. F. A., Sleiman, P. M. A., Finkel, T. H., Polychronakos, C., Baldassano, R. N., Luning Prak, E. T., Ellis, J. A., Li, H., Keating, B. J. & Hakonarson, H., Oct 9 2015, In : Nature communications. 6, 8442.

Research output: Contribution to journalArticle

High-dimensional classification via nonparametric empirical Bayes and maximum likelihood inference

Dicker, L. H. & Zhao, S. D., Jan 1 2015, In : Biometrika. 103, 1, p. 21-34 14 p.

Research output: Contribution to journalArticle

Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases

Li, Y. R., Li, J., Zhao, S. D., Bradfield, J. P., Mentch, F. D., Maggadottir, S. M., Hou, C., Abrams, D. J., Chang, D., Gao, F., Guo, Y., Wei, Z., Connolly, J. J., Cardinale, C. J., Bakay, M., Glessner, J. T., Li, D., Kao, C., Thomas, K. A., Qiu, H. & 46 others, Chiavacci, R. M., Kim, C. E., Wang, F., Snyder, J., Richie, M. D., Flatø, B., Førre, Ø., Denson, L. A., Thompson, S. D., Becker, M. L., Guthery, S. L., Latiano, A., Perez, E., Resnick, E., Russell, R. K., Wilson, D. C., Silverberg, M. S., Annese, V., Lie, B. A., Punaro, M., Dubinsky, M. C., Monos, D. S., Strisciuglio, C., Staiano, A., Miele, E., Kugathasan, S., Ellis, J. A., Munro, J. E., Sullivan, K. E., Wise, C. A., Chapel, H., Cunningham-Rundles, C., Grant, S. F. A., Orange, J. S., Sleiman, P. M. A., Behrens, E. M., Griffiths, A. M., Satsangi, J., Finkel, T. H., Keinan, A., Prak, E. T. L., Polychronakos, C., Baldassano, R. N., Li, H., Keating, B. J. & Hakonarson, H., Sep 8 2015, In : Nature Medicine. 21, 9, p. 1018-1027 10 p.

Research output: Contribution to journalArticle

2014

A Functional Genomic Approach Identifies FAL1 as an Oncogenic Long Noncoding RNA that Associates with BMI1 and Represses p21 Expression in Cancer

Hu, X., Feng, Y., Zhang, D., Zhao, S. D., Hu, Z., Greshock, J., Zhang, Y., Yang, L., Zhong, X., Wang, L. P., Jean, S., Li, C., Huang, Q., Katsaros, D., Montone, K. T., Tanyi, J. L., Lu, Y., Boyd, J., Nathanson, K. L., Li, H. & 2 others, Mills, G. B. & Zhang, L., 2014, In : Cancer Cell. 26, 3, p. 344-357 14 p.

Research output: Contribution to journalArticle

Direct estimation of differential networks

Zhao, S. D., Cai, T. T. & Li, H., Jun 2014, In : Biometrika. 101, 2, p. 253-268 16 p.

Research output: Contribution to journalArticle

Más-o-menos: A simple sign averaging method for discrimination in genomic data analysis

Zhao, S. D., Parmigiani, G., Huttenhower, C. & Waldron, L., May 28 2014, In : Bioinformatics. 30, 21, p. 3062-3069 8 p.

Research output: Contribution to journalArticle

More powerful genetic association testing via a new statistical framework for integrative genomics

Zhao, S. D., Cai, T. T. & Li, H., Dec 1 2014, In : Biometrics. 70, 4, p. 881-890 10 p.

Research output: Contribution to journalArticle

Score test variable screening

Zhao, S. D. & Li, Y., Dec 1 2014, In : Biometrics. 70, 4, p. 862-871 10 p.

Research output: Contribution to journalArticle

The dantzig selector for censored linear regression models

Li, Y., Dicker, L. & Zhao, S. D., Jan 1 2014, In : Statistica Sinica. 24, 1, p. 251-268 18 p.

Research output: Contribution to journalArticle

2013

A randomized phase II study of docetaxel with or without vandetanib in recurrent or metastatic squamous cell carcinoma of head and neck (SCCHN)

Limaye, S., Riley, S., Zhao, S., O'Neill, A., Posner, M., Adkins, D., Jaffa, Z., Clark, J. & Haddad, R., Aug 1 2013, In : Oral Oncology. 49, 8, p. 835-841 7 p.

Research output: Contribution to journalArticle

Detection of novel actionable genetic changes in salivary duct carcinoma helps direct patient treatment

Nardi, V., Sadow, P. M., Juric, D., Zhao, D., Cosper, A. K., Bergethon, K., Scialabba, V. L., Batten, J. M., Borger, D. R., Iafrate, A. J., Heist, R. S., Lawrence, D. P., Flaherty, K. T., Bendell, J. C., Deschler, D., Li, Y., Wirth, L. J. & Dias-Santagata, D., Jan 15 2013, In : Clinical Cancer Research. 19, 2, p. 480-490 11 p.

Research output: Contribution to journalArticle

2012

Principled sure independence screening for Cox models with ultra-high-dimensional covariates

Zhao, S. D. & Li, Y., Feb 2012, In : Journal of Multivariate Analysis. 105, 1, p. 397-411 15 p.

Research output: Contribution to journalArticle

2010

Neck dissection after chemoradiotherapy: Timing and complications

Goguen, L. A., Chapuy, C. I., Li, Y., Zhao, S. D. & Annino, D. J., Nov 1 2010, In : Archives of Otolaryngology - Head and Neck Surgery. 136, 11, p. 1071-1077 7 p.

Research output: Contribution to journalArticle

Preliminary clinical outcomes from the Peruvian National Cataract Elimination Plan

Stryjewski, T. P., Benadretti, D. B., Zhao, S. D., Rowe, S. & Mitnick, C. D., Oct 2010, In : Revista Panamericana de Salud Publica/Pan American Journal of Public Health. 28, 4, p. 282-288 7 p.

Research output: Contribution to journalArticle