19972019
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Research Output 1997 2019

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Conference contribution
2014

Advanced statistical analysis of RNA-Seq differential gene expression profiles of animal gene-environment interactions

Caetano-Anollés, K., Nixon, S., Mishra, S. & Rodriguez-Zas, S. L., Jan 1 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 43-47 5 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gene-Environment Interaction
RNA
Transcriptome
Gene expression
Statistical methods

Evaluation of significance level assignment of database search programs using monte carlo permutation approach

Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Jan 1 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 103-107 5 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Databases
Peptides
Neuropeptides
Tandem Mass Spectrometry
Mass spectrometry

Impact of bias correction methods and increasing the biological samples in transcriptomic analysis

González-Peña, D., Nixon, S. E., Southey, B. R., Lawson, M. A., McCusker, R. H., Dantzer, R., Kelley, K. W. & Rodriguez-Zas, S. L., Jan 1 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 115-118 4 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

RNA
Sample Size
Indoleamine-Pyrrole 2,3,-Dioxygenase
RNA Sequence Analysis
Macrophages

Transcriptomic analysis by RNA-Seq and gene enrichment analysis

Nixon, S. E., González-Peña, D., Lawson, M. A., McCusker, R. H., O'Connor, J. C., Dantzer, R., Kelley, K. W. & Rodriguez-Zas, S. L., Jan 1 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 27-31 5 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

RNA
Genes
Gene Expression Profiling
Binomial Distribution
Biological Phenomena

Understanding the impact of fractionation and dynamic exclusion on proteomics

Zavala, C., Nixon, S., Southey, B. R., Wu, C., Romanova, E. V., Sweedler, J. V. & Rodriguez-Zas, S. L., Jan 1 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 93-96 4 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fractionation
Proteomics
Proteins
Peptides
Databases
2011

Additive and multiplicative genome-wide association models identify genes associated with growth

Zavala, C., Serao, N., Villamil, M. B., Caetano-Anolles, G. & Rodriguez-Zas, S. L., 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 975-977 3 p. 6112527

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Single Nucleotide Polymorphism
Genes
Genome
Nutrition
Growth

Comparison of tandem mass spectrometry search methods to identify neuropeptides

Akhtar, M. N., Southey, B. R., Porter, K. I., Sweedler, J. V. & Rodriguez-Zas, S. L., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 982-984 3 p. 6112530. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tandem Mass Spectrometry
Neuropeptides
Mass spectrometry
Peptides
Amino acids

Hierarchical modeling of alternative exon usage associations with survival

Sadeque, A., Serão, N. V. L., Southey, B. R., Fazal, Z. & Rodriguez-Zas, S. L., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 978-980 3 p. 6112528. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Exons
Genes
Survival
Glioblastoma
Association reactions

Integration of polygenic and individual SNP effects in genome-wide association analyses

Serão, N. V. L., Beever, J. E., Faulkner, D. B. & Rodriguez-Zas, S. L., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 985-987 3 p. 6112531. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genome-Wide Association Study
Single Nucleotide Polymorphism
Genes
Chromosomes
Chromosomes, Human, Pair 3

Integration of sequence and functional information to identify and annotate neuropeptides in the pig genome

Porter, K. I., Southey, B. R., Akhtar, M. N., Sweedler, J. V. & Rodriguez-Zas, S. L., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 988-990 3 p. 6112532. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Neuropeptides
Swine
Genes
Genome
Proprotein Convertases

Integration of statistical models and visualization tools to characterize microRNA networks influencing cancer

Karnia, J., Delfino, K. R., Villamil, M. B., Caetano-Anolles, G. & Rodriguez-Zas, S. L., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 1009-1011 3 p. 6112541. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Statistical Models
MicroRNAs
Immune system
Immune System
Visualization

Integration of statistical models and visualization tools to characterize microRNA networks influencing cancer

Delfino, K. R. & Rodriguez-Zas, S. L., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 969-971 3 p. 6112523. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Transcription factors
Biomarkers
Statistical Models
MicroRNAs
Visualization

Model of ion intensity from tandem mass spectra for improved peptide identification and simulation

Fazal, Z., Southey, B. R., Sadeque, A., Sweedler, J. V. & Rodriguez-Zas, S. L., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 994-996 3 p. 6112534. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Peptides
Ions
Mass spectrometry
Tandem Mass Spectrometry
Protons
2007

Comparative analysis of binary logistic regression to artificial neural networks in predicting precursor sequence cleavage

Tegge, A., Rodriguez-Zas, S. L., Sweedler, J. V. & Southey, B., 2007, Proceedings - 2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW. p. 101-108 8 p. 4425407

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Logistics
Neural networks
Amino acids
Bioinformatics
Rats

Enhanced prediction of cleavage in bovine precursor sequences

Tegge, A. N., Rodriguez-Zas, S. L., Sweedler, J. V. & Southey, B. R., Aug 3 2007, Bioinformatics Research and Applications - Third International Symposium, ISBRA 2007, Proceedings. p. 350-360 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4463 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Neuropeptides
Precursor
Prediction
Logistic Model
Amino Acids

Inference of gene pathways using Gaussian mixture models

Ko, Y., Zhai, C. & Rodriguez-Zas, S. L., Dec 1 2007, Proceedings - 2007 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2007. p. 362-367 6 p. 4413078. (Proceedings - 2007 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2007).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes
Bayesian networks
Gene expression
Gene Components
Biological Phenomena

Smoothing spline mixed effects modeling of multifactorial gene expression profiles

Smith, B. J., Southey, B. R. & Rodriguez-Zas, S. L., Dec 1 2007, Proceedings - 2007 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2007. p. 325-330 6 p. 4413073. (Proceedings - 2007 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2007).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Transcriptome
Gene expression
Splines
Microarrays
Honey