Research Output per year
Research Output
2020
Acidification in corn monocultures favor fungi, ammonia oxidizing bacteria, and nirK-denitrifier groups
Behnke, G. D., Zabaloy, M. C., Riggins, C. W., Rodríguez-Zas, S., Huang, L. & Villamil, M. B., Jun 10 2020, In : Science of the Total Environment. 720, 137514.Research output: Contribution to journal › Article
Open Access
Characterization of the prohormone complement in Amphiprion and related fish species integrating genome and transcriptome assemblies
Southey, B. R., Rodriguez-Zas, S. L., Rhodes, J. S. & Sweedler, J. V., 2020, In : PloS one. 15, 3, e0228562.Research output: Contribution to journal › Article
Open Access
Prepartum dietary energy intake alters adipose tissue transcriptome profiles during the periparturient period in Holstein dairy cows
Minuti, A., Bionaz, M., Lopreiato, V., Janovick, N. A., Rodriguez-Zas, S. L., Drackley, J. K. & Loor, J. J., Jan 3 2020, In : Journal of Animal Science and Biotechnology. 11, 1, 1.Research output: Contribution to journal › Article
Open Access
2019
Hepatic betaine-homocysteine methyltransferase and methionine synthase activity and intermediates of the methionine cycle are altered by choline supply during negative energy balance in Holstein cows
Coleman, D. N., Vailati-Riboni, M., Elolimy, A. A., Cardoso, F. C., Rodriguez-Zas, S. L., Miura, M., Pan, Y. X. & Loor, J. J., Sep 2019, In : Journal of Dairy Science. 102, 9, p. 8305-8318 14 p.Research output: Contribution to journal › Article
Jersey steer ruminal papillae histology and nutrigenomics with diet changes
Novak, T. E., Rodriguez-Zas, S. L., Southey, B. R., Starkey, J. D., Stockler, R. M., Alfaro, G. F. & Moisá, S. J., Nov 1 2019, In : Journal of Animal Physiology and Animal Nutrition. 103, 6, p. 1694-1707 14 p.Research output: Contribution to journal › Article
Open Access
Long-term N fertilization decreased diversity and altered the composition of soil bacterial and archaeal communities
Sun, R., Zhang, P., Riggins, C. W., Zabaloy, M. C., Rodríguez-Zas, S. & Villamil, M. B., Sep 23 2019, In : Agronomy. 9, 10, 574.Research output: Contribution to journal › Article
Open Access
Long-term N fertilization imbalances potential N acquisition and transformations by soil microbes
Huang, L., Riggins, C. W., Rodríguez-Zas, S., Zabaloy, M. C. & Villamil, M. B., Nov 15 2019, In : Science of the Total Environment. 691, p. 562-571 10 p.Research output: Contribution to journal › Article
Open Access
Markov chain Monte Carlo simulation of a Bayesian mixture model for gene network inference
Ko, Y., Kim, J. & Rodriguez-Zas, S. L., May 1 2019, In : Genes and Genomics. 41, 5, p. 547-555 9 p.Research output: Contribution to journal › Article
Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens
Zhang, P., Moye, L. S., Southey, B. R., Dripps, I., Sweedler, J. V., Pradhan, A. & Rodriguez-Zas, S. L., Dec 1 2019, In : Molecular Neurobiology. 56, 12, p. 7929-7949 21 p.Research output: Contribution to journal › Article
2018
Bioinformatics for prohormone and neuropeptide discovery
Southey, B. R., Romanova, E. V., Rodriguez-Zas, S. L. & Sweedler, J. V., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 71-96 26 p. (Methods in Molecular Biology; vol. 1719).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Brain region-dependent gene networks associated with selective breeding for increased voluntary wheel-running behavior
Zhang, P., Rhodes, J. S., Garland, T., Perez, S. D., Southey, B. R. & Rodriguez-Zas, S. L., Aug 2018, In : PloS one. 13, 8, e0201773.Research output: Contribution to journal › Article
Disruption of microglia histone acetylation and protein pathways in mice exhibiting inflammation-associated depression-like symptoms
Rodriguez-Zas, S. L., Wu, C., Southey, B. R., O'Connor, J. C., Nixon, S. E., Garcia, R., Zavala, C., Lawson, M., McCusker, R. H., Romanova, E. V., Sweedler, J. V., Kelley, K. W. & Dantzer, R., Nov 2018, In : Psychoneuroendocrinology. 97, p. 47-58 12 p.Research output: Contribution to journal › Article
Gene network dysregulation in the trigeminal ganglia and nucleus accumbens of a model of chronic migraine-associated hyperalgesia
Jeong, H., Moye, L. S., Southey, B. R., Hernandez, A. G., Dripps, I., Romanova, E. V., Rubakhin, S. S., Sweedler, J. V., Pradhan, A. A. & Rodriguez-Zas, S. L., Dec 18 2018, In : Frontiers in Systems Neuroscience. 12, 63.Research output: Contribution to journal › Article
Interplay Between Amphetamine and Activity Level in Gene Networks of the Mouse Striatum
Goncalves, T. M., Southey, B. R. & Rodriguez-Zas, S. L., Dec 1 2018, In : Bioinformatics and Biology Insights. 12Research output: Contribution to journal › Article
Striatal transcriptome of a mouse model of ADHD reveals a pattern of synaptic remodeling
Sorokina, A. M., Saul, M., Goncalves, T. M., Gogola, J. V., Majdak, P., Rodriguez-Zas, S. L. & Rhodes, J. S., Aug 2018, In : PloS one. 13, 8, e0201553.Research output: Contribution to journal › Article
2017
Nutrition, reproduction, and young stock performance on dairy farms throughout Illinois: A Dairy Focus Team approach
Rivelli, M. I., Morrison, S. Y., Haerr, K. J., Zas, S. R. & Cardoso, F. C., Aug 2017, In : Professional Animal Scientist. 33, 4, p. 409-419 11 p.Research output: Contribution to journal › Article
Prepartal Energy Intake Alters Blood Polymorphonuclear Leukocyte Transcriptome During the Peripartal Period in Holstein Cows
Agrawal, A., Khan, M. J., Graugnard, D. E., Vailati-Riboni, M., Rodriguez-Zas, S. L., Osorio, J. S. & Loor, J. J., Apr 27 2017, In : Bioinformatics and Biology Insights. 11Research output: Contribution to journal › Article
Transcriptional changes in mesenteric and subcutaneous adipose tissue from Holstein cows in response to plane of dietary energy
Moisá, S. J., Ji, P., Drackley, J. K., Rodriguez-Zas, S. L. & Loor, J. J., Dec 4 2017, In : Journal of Animal Science and Biotechnology. 8, 1, 85.Research output: Contribution to journal › Article
2016
Cerebellum transcriptome of mice bred for high voluntary activity offers insights into locomotor control and reward-dependent behaviors
Caetano-Anollés, K., Rhodes, J. S., Garland, T., Perez, S. D., Hernandez, A. G., Southey, B. R. & Rodriguez-Zas, S. L., Nov 2016, In : PloS one. 11, 11, e0167095.Research output: Contribution to journal › Article
Characterization of genomic variants associated with scout and recruit behavioral castes in honey bees using whole-genome sequencing
Southey, B. R., Zhu, P., Carr-Markell, M. K., Liang, Z. S., Zayed, A., Li, R., Robinson, G. E. & Rodriguez-Zas, S. L., Jan 1 2016, In : PloS one. 11, 1, e0146430.Research output: Contribution to journal › Article
Comprehensive identification of sexually dimorphic genes in diverse cattle tissues using RNA-seq
Seo, M., Caetano-Anolles, K., Rodriguez-Zas, S., Ka, S., Jeong, J. Y., Park, S., Kim, M. J., Nho, W. G., Cho, S., Kim, H. & Lee, H. J., Jan 27 2016, In : BMC genomics. 17, 1, 81.Research output: Contribution to journal › Article
Contribution of semen trait selection, artificial insemination technique, and semen dose to the profitability of pig production systems: A simulation study
Gonzalez-Pena, D., Knox, R. V. & Rodriguez-Zas, S. L., Jan 15 2016, In : Theriogenology. 85, 2, p. 335-344 10 p.Research output: Contribution to journal › Article
Differential transcriptome networks between IDO1-Knockout and wild-type mice in brain microglia and macrophages
Gonzalez-Pena, D., Nixon, S. E., Southey, B. R., Lawson, M. A., McCusker, R. H., Hernandez, A. G., Dantzer, R., Kelley, K. W. & Rodriguez-Zas, S. L., Jun 2016, In : PloS one. 11, 6, e0157727.Research output: Contribution to journal › Article
Microglia transcriptome changes in a model of depressive behavior after immune challenge
Gonzalez-Pena, D., Nixon, S. E., O'Connor, J. C., Southey, B. R., Lawson, M. A., McCusker, R. H., Borras, T., Machuca, D., Hernandez, A. G., Dantzer, R., Kelley, K. W. & Rodriguez-Zas, S. L., Mar 2016, In : PloS one. 11, 3, e0150858.Research output: Contribution to journal › Article
Prepartum body condition score and plane of nutrition affect the hepatic transcriptome during the transition period in grazing dairy cows
Vailati-Riboni, M., Meier, S., Burke, C. R., Kay, J. K., Mitchell, M. D., Walker, C. G., Crookenden, M. A., Heiser, A., Rodriguez-Zas, S. L., Roche, J. R. & Loor, J. J., Nov 2 2016, In : BMC genomics. 17, 1, 854.Research output: Contribution to journal › Article
Transcriptomic profiling of central nervous system regions in three species of honey bee during dance communication behavior
Sarma, M. S., Rodriguez-Zas, S. L., Hong, F., Zhong, S. & Robinson, G. E., Apr 19 2016, Animal Behavior: An Evolutionary Approach. Apple Academic Press, p. 210-230 21 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
2015
Acute mammary and liver transcriptome responses after an intramammary escherichia coli lipopolysaccharide challenge in postpartal dairy cows
Minuti, A., Zhou, Z., Graugnard, D. E., Rodriguezzas, S. L., Palladino, A. R., Cardoso, F. C., Trevisi, E. & Loor, J. J., Jan 1 2015, In : Physiological Reports. 3, 4, e12388.Research output: Contribution to journal › Article
Advancing the understanding of behaviors associated with Bacille Calmette Guérin infection using multivariate analysis
Rodriguez-Zas, S. L., Nixon, S. E., Lawson, M. A., Mccusker, R. H., Southey, B. R., O'Connor, J. C., Dantzer, R. & Kelley, K. W., Feb 1 2015, In : Brain, Behavior, and Immunity. 44, p. 176-186 11 p.Research output: Contribution to journal › Article
Analytical workflow profiling gene expression in murine macrophages
Nixon, S. E., Gonzalez-Peña, D., Lawson, M. A., McCusker, R. H., Hernandez, A. G., O'Connor, J. C., Dantzer, R., Kelley, K. W. & Rodriguez-Zas, S. L., Apr 25 2015, In : Journal of Bioinformatics and Computational Biology. 13, 2, 1550010.Research output: Contribution to journal › Article
Beef cow prepartum supplement level and age at weaning: II. Effects of developmental programming on performance and carcass composition of steer progeny
Shoup, L. M., Wilson, T. B., González-Peña, D., Ireland, F. A., Rodriguez-Zas, S., Felix, T. L. & Shike, D. W., Oct 2015, In : Journal of animal science. 93, 10, p. 4936-4947 12 p.Research output: Contribution to journal › Article
Comprehensive identification of sexual dimorphism-associated differentially expressed genes in two-way factorial designed RNA-seq data on Japanese quail (Coturnix coturnix japonica)
Caetano-Anolles, K., Seo, M., Rodriguez-Zas, S., Oh, J. D., Han, J. Y., Lee, K., Park, T. S., Shin, S., Jiao, Z. J., Ghosh, M., Jeong, D. K., Cho, S., Kim, H., Song, K. D. & Lee, H. K., Sep 29 2015, In : PloS one. 10, 9, e0139324.Research output: Contribution to journal › Article
Diet and endocrine effects on behavioral maturation-related gene expression in the pars intercerebralis of the honey bee brain
Wheeler, M. M., Ament, S. A., Rodriguez-Zas, S. L., Southey, B. & Robinson, G. E., Dec 1 2015, In : Journal of Experimental Biology. 218, 24, p. 4005-4014 10 p.Research output: Contribution to journal › Article
Enhanced fertility prediction of cryopreserved boar spermatozoa using novel sperm function assessment
Daigneault, B. W., Mcnamara, K. A., Purdy, P. H., Krisher, R. L., Knox, R. V., Rodriguez-Zas, S. L. & Miller, D. J., May 1 2015, In : Andrology. 3, 3, p. 558-568 11 p.Research output: Contribution to journal › Article
Genetic gain and economic values of selection strategies including semen traits in three- and four-way crossbreeding systems for swine production
González-Peña, D., Knox, R. V., Macneil, M. D. & Rodriguez-Zas, S. L., Mar 31 2015, In : Journal of animal science. 93, 3, p. 879-891 13 p.Research output: Contribution to journal › Article
Maternal plane of nutrition during late gestation and weaning age alter Angus × Simmental offspring longissimus muscle transcriptome and intramuscular fat
Moisá, S. J., Shike, D. W., Shoup, L., Rodriguez-Zas, S. L. & Loor, J. J., Jul 8 2015, In : PloS one. 10, 7, e0131478.Research output: Contribution to journal › Article
Prepartum supplement level and age at weaning: I. Effects on pre- and postpartum beef cow performance and calf performance through weaning
Shoup, L. M., Kloth, A. C., Wilson, T. B., González-Peña, D., Ireland, F. A., Rodriguez-Zas, S., Felix, T. L. & Shike, D. W., Oct 2015, In : Journal of animal science. 93, 10, p. 4926-4935 10 p.Research output: Contribution to journal › Article
Synergistic and antagonistic interplay between myostatin gene expression and physical activity levels on gene expression patterns in triceps brachii muscles of C57/BL6 mice
Caetano-Anollés, K., Mishra, S. & Rodriguez-Zas, S. L., Feb 24 2015, In : PloS one. 10, 2, e0116828.Research output: Contribution to journal › Article
The effect of calving in the summer on the hepatic transcriptome of Holstein cows during the peripartal period
Shahzad, K., Akbar, H., Vailati-Riboni, M., Basiricò, L., Morera, P., Rodriguez-Zas, S. L., Nardone, A., Bernabucci, U. & Loor, J. J., Aug 1 2015, In : Journal of Dairy Science. 98, 8, p. 5401-5413 13 p.Research output: Contribution to journal › Article
2014
Accurate assignment of significance to neuropeptide identifications using monte carlo K-permuted decoy databases
Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Oct 17 2014, In : PloS one. 9, 10, e111112.Research output: Contribution to journal › Article
Advanced statistical analysis of RNA-Seq differential gene expression profiles of animal gene-environment interactions
Caetano-Anollés, K., Nixon, S., Mishra, S. & Rodriguez-Zas, S. L., Jan 1 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 43-47 5 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Comparative brain transcriptomic analyses of scouting across distinct behavioural and ecological contexts in honeybees
Liang, Z. S., Mattila, H. R., Rodriguez-Zas, S. L., Southey, B. R., Seeley, T. D. & Robinson, G. E., Oct 29 2014, In : Proceedings of the Royal Society B: Biological Sciences. 281, 1797, 20141868.Research output: Contribution to journal › Article
Evaluation of significance level assignment of database search programs using monte carlo permutation approach
Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Jan 1 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 103-107 5 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Identification of best indicators of peptide-spectrum match using a permutation resampling approach
Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Oct 30 2014, In : Journal of Bioinformatics and Computational Biology. 12, 5, 1440001.Research output: Contribution to journal › Article
Impact of bias correction methods and increasing the biological samples in transcriptomic analysis
González-Peña, D., Nixon, S. E., Southey, B. R., Lawson, M. A., McCusker, R. H., Dantzer, R., Kelley, K. W. & Rodriguez-Zas, S. L., Jan 1 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 115-118 4 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Impact of pig insemination technique and semen preparation on profitability
Gonzalez-Peña, D., Knox, R. V., Pettigrew, J. & Rodriguez-Zas, S. L., Jan 2014, In : Journal of animal science. 92, 1, p. 72-84 13 p.Research output: Contribution to journal › Article
Integrative analyses of hepatic differentially expressed genes and blood biomarkers during the peripartal period between dairy cows overfed or restricted-fed energy prepartum
Shahzad, K., Bionaz, M., Trevisi, E., Bertoni, G., Rodriguez-Zas, S. L. & Loor, J. J., Jun 10 2014, In : PloS one. 9, 6, e99757.Research output: Contribution to journal › Article
Postpartal subclinical endometritis alters transcriptome profiles in liver and adipose tissue of dairy cows
Akbar, H., Cardoso, F. C., Meier, S., Burke, C., McDougall, S., Mitchell, M., Walker, C., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., Roche, J. R. & Loor, J. J., Feb 19 2014, In : Bioinformatics and Biology Insights. 8, p. 45-63 19 p.Research output: Contribution to journal › Article
Ruminal epithelium transcriptome dynamics in response to plane of nutrition and age in young Holstein calves
Naeem, A., Drackley, J. K., Lanier, J. S., Everts, R. E., Rodriguez-Zas, S. L. & Loor, J. J., Mar 2014, In : Functional and Integrative Genomics. 14, 1, p. 261-273 13 p.Research output: Contribution to journal › Article
Transcriptomic analysis by RNA-Seq and gene enrichment analysis
Nixon, S. E., González-Peña, D., Lawson, M. A., McCusker, R. H., O'Connor, J. C., Dantzer, R., Kelley, K. W. & Rodriguez-Zas, S. L., Jan 1 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 27-31 5 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Understanding the impact of fractionation and dynamic exclusion on proteomics
Zavala, C., Nixon, S., Southey, B. R., Wu, C., Romanova, E. V., Sweedler, J. V. & Rodriguez-Zas, S. L., Jan 1 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 93-96 4 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution