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Research Output

2020

Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia

Loog, L., Thalmann, O., Sinding, M. H. S., Schuenemann, V. J., Perri, A., Germonpré, M., Bocherens, H., Witt, K. E., Samaniego Castruita, J. A., Velasco, M. S., Lundstrøm, I. K. C., Wales, N., Sonet, G., Frantz, L., Schroeder, H., Budd, J., Jimenez, E. L., Fedorov, S., Gasparyan, B., Kandel, A. W. & 16 others, Lázničková-Galetová, M., Napierala, H., Uerpmann, H. P., Nikolskiy, P. A., Pavlova, E. Y., Pitulko, V. V., Herzig, K. H., Malhi, R. S., Willerslev, E., Hansen, A. J., Dobney, K., Gilbert, M. T. P., Krause, J., Larson, G., Eriksson, A. & Manica, A., May 1 2020, In : Molecular ecology. 29, 9, p. 1596-1610 15 p.

Research output: Contribution to journalArticle

Open Access
2019

Ancient DNA analysis of a nineteenth century tobacco pipe from a Maryland slave quarter

Schablitsky, J. M., Witt, K. E., Madrigal, J. R., Ellegaard, M. R., Malhi, R. S. & Schroeder, H., May 2019, In : Journal of Archaeological Science. 105, p. 11-18 8 p.

Research output: Contribution to journalArticle

Open Access

Increasing Diversity in Evolutionary Anthropological Sciences—the IDEAS Program

Malhi, R. S., Antón, S. C. & Fuentes, A., May 2019, In : American Anthropologist. 121, 2, p. 478-479 2 p.

Research output: Contribution to journalLetter

Open Access

Knowledge, attitudes, and perceived barriers towards genetic testing across three rural Illinois communities

Fogleman, A. J., Zahnd, W. E., Lipka, A. E., Malhi, R. S., Ganai, S., Delfino, K. R. & Jenkins, W. D., Jul 4 2019, In : Journal of Community Genetics. 10, 3, p. 417-423 7 p.

Research output: Contribution to journalArticle

Loxodonta localizer: A software tool for inferring the provenance of african elephants and their ivory using mitochondrial DNA

Zhao, K., Ishida, Y., Green, C. E., Davidson, A. G., Sitam, F. A. T., Donnelly, C. L., De Flamingh, A., Perrin-Stowe, T. I. N., Bourgeois, S., Brandt, A. L., Mundis, S. J., Van Aarde, R. J., Greenberg, J. A., Malhi, R. S., Georgiadis, N. J., McEwing, R. & Roca, A. L., Oct 1 2019, In : Journal of Heredity. 110, 7, p. 761-768 8 p.

Research output: Contribution to journalArticle

Open Access

Population structure analyses provide insight into the source populations underlying rural isolated communities in illinois

Owings, A. C., Fernandes, S. B., Olatoye, M. O., Fogleman, A. J., Zahnd, W. E., Jenkins, W. D., Malhi, R. S. & Lipka, A. E., Dec 1 2019, In : Human biology. 91, 1, p. 31-47 17 p.

Research output: Contribution to journalArticle

The population history of northeastern Siberia since the Pleistocene

Sikora, M., Pitulko, V. V., Sousa, V. C., Allentoft, M. E., Vinner, L., Rasmussen, S., Margaryan, A., de Barros Damgaard, P., de la Fuente, C., Renaud, G., Yang, M. A., Fu, Q., Dupanloup, I., Giampoudakis, K., Nogués-Bravo, D., Rahbek, C., Kroonen, G., Peyrot, M., McColl, H., Vasilyev, S. V. & 34 others, Veselovskaya, E., Gerasimova, M., Pavlova, E. Y., Chasnyk, V. G., Nikolskiy, P. A., Gromov, A. V., Khartanovich, V. I., Moiseyev, V., Grebenyuk, P. S., Fedorchenko, A. Y., Lebedintsev, A. I., Slobodin, S. B., Malyarchuk, B. A., Martiniano, R., Meldgaard, M., Arppe, L., Palo, J. U., Sundell, T., Mannermaa, K., Putkonen, M., Alexandersen, V., Primeau, C., Baimukhanov, N., Malhi, R. S., Sjögren, K. G., Kristiansen, K., Wessman, A., Sajantila, A., Lahr, M. M., Durbin, R., Nielsen, R., Meltzer, D. J., Excoffier, L. & Willerslev, E., Jun 13 2019, In : Nature. 570, 7760, p. 182-188 7 p.

Research output: Contribution to journalArticle

2018

Advancing the ethics of paleogenomics

Bardill, J., Bader, A. C., Garrison, N. A., Bolnick, D. A., Raff, J. A., Walker, A. & Malhi, R. S., Apr 27 2018, In : Science. 360, 6387, p. 384-385 2 p.

Research output: Contribution to journalComment/debate

A framework for enhancing ethical genomic research with Indigenous communities

Summer internship for INdigenous peoples in Genomics (SING) Consortium, Dec 1 2018, In : Nature communications. 9, 1, 2957.

Research output: Contribution to journalReview article

Ancient human parallel lineages within North America contributed to a coastal expansion

Scheib, C. L., Li, H., Desai, T., Link, V., Kendall, C., Dewar, G., Griffith, P. W., Mörseburg, A., Johnson, J. R., Potter, A., Kerr, S. L., Endicott, P., Lindo, J., Haber, M., Xue, Y., Tyler-Smith, C., Sandhu, M. S., Lorenz, J. G., Randall, T. D., Faltyskova, Z. & 20 others, Pagani, L., Danecek, P., O’Connell, T. C., Martz, P., Boraas, A. S., Byrd, B. F., Leventhal, A., Cambra, R., Williamson, R., Lesage, L., Holguin, B., Soto, E. Y. D., Rosas, J. T., Metspalu, M., Stock, J. T., Manica, A., Scally, A., Wegmann, D., Malhi, R. S. & Kivisild, T., Jun 1 2018, In : Science. 360, 6392, p. 1024-1027 4 p.

Research output: Contribution to journalArticle

Arrival routes of first Americans uncertain

Potter, B. A., Beaudoin, A. B., Haynes, C. V., Holliday, V. T., Holmes, C. E., Ives, J. W., Kelly, R., Llamas, B., Malhi, R., Miller, S., Reich, D., Reuther, J. D., Schiffels, S. & Surovell, T., Mar 16 2018, In : Science. 359, 6381, p. 1224-1225 2 p.

Research output: Contribution to journalLetter

Current evidence allows multiple models for the peopling of the Americas

Potter, B. A., Baichtal, J. F., Beaudoin, A. B., Fehren-Schmitz, L., Haynes, C. V., Holliday, V. T., Holmes, C. E., Ives, J. W., Kelly, R. L., Llamas, B., Malhi, R. S., Miller, D. S., Reich, D., Reuther, J. D., Schiffels, S. & Surovell, T. A., Aug 8 2018, In : Science Advances. 4, 8, eaat5473.

Research output: Contribution to journalReview article

Early human dispersals within the Americas

Víctor Moreno-Mayar, J., Vinner, L., De Barros Damgaard, P., De La Fuente, C., Chan, J., Spence, J. P., Allentoft, M. E., Vimala, T., Racimo, F., Pinotti, T., Rasmussen, S., Margaryan, A., Orbegozo, M. I., Mylopotamitaki, D., Wooller, M., Bataille, C., Becerra-Valdivia, L., Chivall, D., Comeskey, D., Devièse, T. & 34 others, Grayson, D. K., George, L., Harry, H., Alexandersen, V., Primeau, C., Erlandson, J., Rodrigues-Carvalho, C., Reis, S., Bastos, M. Q. R., Cybulski, J., Vullo, C., Morello, F., Vilar, M., Wells, S., Gregersen, K., Hansen, K. L., Lynnerup, N., Lahr, M. M., Kjær, K., Strauss, A., Alfonso-Durruty, M., Salas, A., Schroeder, H., Higham, T., Malhi, R. S., Rasic, J. T., Souza, L., Santos, F. R., Malaspinas, A. S., Sikora, M., Nielsen, R., Song, Y. S., Meltzer, D. J. & Willerslev, E., Dec 7 2018, In : Science. 362, 6419, eaav2621.

Research output: Contribution to journalArticle

Foreword

Dominguez, V. R. & Malhi, R. S., Jun 2018, In : American Anthropologist. 120, 2, p. 328-329 2 p.

Research output: Contribution to journalEditorial

Genetic Structure and Diversity Among Historic and Modern Populations of the Sumatran Rhinoceros (Dicerorhinus sumatrensis)

Brandt, J. R., De Groot, P. J. V. C., Witt, K. E., Engelbrektsson, P. K., Helgen, K. M., Malhi, R. S., Ryder, O. A. & Roca, A. L., Jun 27 2018, In : Journal of Heredity. 109, 5, p. 553-565 13 p.

Research output: Contribution to journalArticle

Influence of fruit and invertebrate consumption on the gut microbiota of wild white-faced capuchins (Cebus capucinus)

Mallott, E. K., Amato, K. R., Garber, P. A. & Malhi, R. S., Mar 2018, In : American journal of physical anthropology. 165, 3, p. 576-588 13 p.

Research output: Contribution to journalArticle

Interview with Maria Cátira Bortolini, Anthropological Geneticist

Bortolini, M. C., Dominguez, V. R. & Malhi, R. S., Jun 2018, In : American Anthropologist. 120, 2, p. 343-344 2 p.

Research output: Contribution to journalComment/debate

Patterns of Genetic Coding Variation in a Native American Population before and after European Contact

Lindo, J., Rogers, M., Mallott, E. K., Petzelt, B., Mitchell, J., Archer, D., Cybulski, J. S., Malhi, R. S. & DeGiorgio, M., May 3 2018, In : American Journal of Human Genetics. 102, 5, p. 806-815 10 p.

Research output: Contribution to journalArticle

Race and diversity in U.S. Biological Anthropology: A decade of AAPA initiatives

Antón, S. C., Malhi, R. S. & Fuentes, A., Jan 2018, In : American journal of physical anthropology. 165, p. 158-180 23 p.

Research output: Contribution to journalArticle

Species identification and mitochondrial genomes of ancient fish bones from the Riverine Kachemak tradition of the Kenai Peninsula, Alaska

de Flamingh, A., Mallott, E. K., Roca, A. L., Boraas, A. S. & Malhi, R. S., Jan 2 2018, In : Mitochondrial DNA Part B: Resources. 3, 1, p. 409-411 3 p.

Research output: Contribution to journalArticle

Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans

Moreno-Mayar, J. V., Potter, B. A., Vinner, L., Steinrücken, M., Rasmussen, S., Terhorst, J., Kamm, J. A., Albrechtsen, A., Malaspinas, A. S., Sikora, M., Reuther, J. D., Irish, J. D., Malhi, R. S., Orlando, L., Song, Y. S., Nielsen, R., Meltzer, D. J. & Willerslev, E., Jan 11 2018, In : Nature. 553, 7687, p. 203-207 5 p.

Research output: Contribution to journalArticle

The evolutionary history of dogs in the Americas

Leathlobhair, M. N., Perri, A. R., Irving-Pease, E. K., Witt, K. E., Linderholm, A., Haile, J., Lebrasseur, O., Ameen, C., Blick, J., Boyko, A. R., Brace, S., Cortes, Y. N., Crockford, S. J., Devault, A., Dimopoulos, E. A., Eldridge, M., Enk, J., Gopalakrishnan, S., Gori, K., Grimes, V. & 30 others, Guiry, E., Hansen, A. J., Hulme-Beaman, A., Johnson, J., Kitchen, A., Kasparov, A. K., Kwon, Y. M., Nikolskiy, P. A., Lope, C. P., Manin, A., Martin, T., Meyer, M., Myers, K. N., Omura, M., Rouillard, J. M., Pavlova, E. Y., Sciulli, P., Sinding, M. H. S., Strakova, A., Ivanova, V. V., Widga, C., Willerslev, E., Pitulko, V. V., Barnes, I., Gilbert, M. T. P., Dobney, K. M., Malhi, R. S., Murchison, E. P., Larson, G. & Frantz, L. A. F., Jul 6 2018, In : Science. 361, 6397, p. 81-85 5 p.

Research output: Contribution to journalArticle

2017

Ancient individuals from the North American Northwest Coast reveal 10,000 years of regional genetic continuity

Lindo, J., Achilli, A., Perego, U. A., Archer, D., Valdiosera, C., Petzelt, B., Mitchell, J., Worl, R., Dixon, E. J., Fifield, T. E., Rasmussen, M., Willerslev, E., Cybulski, J. S., Kemp, B. M., DeGiorgio, M. & Malhi, R. S., Apr 18 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 16, p. 4093-4098 6 p.

Research output: Contribution to journalArticle

Chaco canyon dig unearths ethical concerns

Claw, K. G., Lippert, D., Bardill, J., Cordova, A., Fox, K., Yracheta, J. M., Bader, A. C., Bolnick, D. A., Malhi, R. S., Tallbear, K. & Garrison, N. A., Jun 1 2017, In : Human biology. 89, 3, p. 177-180 4 p.

Research output: Contribution to journalComment/debate

Complete mitochondrial genome sequencing of a burial from a Romano-Christian cemetery in the Dakhleh Oasis, Egypt: Preliminary indications

Molto, J. E., Loreille, O., Mallott, E. K., Malhi, R. S., Fast, S., Daniels-Higginbotham, J., Marshall, C. & Parr, R., Oct 6 2017, In : Genes. 8, 10, 262.

Research output: Contribution to journalArticle

Engaging rural communities in genetic research: challenges and opportunities

Dean, C., Fogleman, A. J., Zahnd, W. E., Lipka, A. E., Malhi, R. S., Delfino, K. R. & Jenkins, W. D., Jul 1 2017, In : Journal of Community Genetics. 8, 3, p. 209-219 11 p.

Research output: Contribution to journalArticle

Tracing the phylogeographic history of Southeast Asian long-tailed macaques through mitogenomes of museum specimens

Yao, L., Li, H., Martin, R. D., Moreau, C. S. & Malhi, R. S., Nov 2017, In : Molecular Phylogenetics and Evolution. 116, p. 227-238 12 p.

Research output: Contribution to journalArticle

2016

2015 Gabriel W. Lasker Award

Malhi, R. S., Sep 1 2016, In : Human biology. 88, 4, 1 p.

Research output: Contribution to journalComment/debate

A time transect of exomes from a Native American population before and after European contact

Lindo, J., Huerta-Sánchez, E., Nakagome, S., Rasmussen, M., Petzelt, B., Mitchell, J., Cybulski, J. S., Willerslev, E., Degiorgio, M. & Malhi, R. S., Nov 15 2016, In : Nature communications. 7, 13175.

Research output: Contribution to journalArticle

Genetic structure of first nation communities in the pacific northwest

Hughes, C. E., Rogers, M. P., Owings, A. C., Petzelt, B., Mitchell, J., Harry, H., Williams, T., Goldberg, D., Labuda, D., Smith, D. G., Cybulski, J. S. & Malhi, R. S., Sep 1 2016, In : Human biology. 88, 4, p. 251-263 13 p.

Research output: Contribution to journalArticle

Isotopic and genetic analyses of a mass grave in central California: Implications for precontact hunter-gatherer warfare

Eerkens, J. W., Carlson, T., Malhi, R. S., Blake, J., Bartelink, E. J., Barfod, G. H., Estes, A., Garibay, R., Glessner, J., Greenwald, A. M., Lentz, K., Li, H. & Marshall, C. K., Jan 1 2016, In : American journal of physical anthropology. 159, 1, p. 116-125 10 p.

Research output: Contribution to journalArticle

Police Endorse Color-Blind Racial Beliefs More Than Laypersons

Hughes, C. E., Hunter, C. D., Vargas, P. T., Schlosser, M. D. & Malhi, R. S., Jun 1 2016, In : Race and Social Problems. 8, 2, p. 160-170 11 p.

Research output: Contribution to journalArticle

Variance in disease risk: Rural populations and genetic diversity

Jenkins, W. D., Lipka, A. E., Fogleman, A. J., Delfino, K. R., Malhi, R. S., Hendricks, B. & Cristescu, M. E., May 18 2016, In : Genome. 59, 7, p. 519-525 7 p.

Research output: Contribution to journalArticle

2015

Anthropological Genetics

Kitchen, A., Non, A. L., Gravlee, C. C., Mulligan, C. J., Warinner, C., Lewis, C. M., Bankoff, R. J., Randrianatoandro, H. D. D., Perry, G. H., Malhi, R. S., Bader, A. C. & Raff, J., Dec 1 2015, In : American Anthropologist. 117, 4, p. 736-737 2 p.

Research output: Contribution to journalLetter

A south American prehistoric mitogenome: Context, continuity, and the origin of haplogroup C1d

Sans, M., Figueiro, G., Hughes, C. E., Lindo, J., Hidalgo, P. C. & Malhi, R. S., Oct 28 2015, In : PloS one. 10, 10, e0141808.

Research output: Contribution to journalArticle

Case study on ancestry estimation in an alaskan native family: Identity and safeguards against reductionism

Bader, A. C. & Malhi, R. S., Oct 1 2015, In : Human biology. 87, 4, p. 338-351 14 p.

Research output: Contribution to journalArticle

Comparative and population mitogenomic analyses of Madagascar's extinct, giant 'subfossil' lemurs

Kistler, L., Ratan, A., Godfrey, L. R., Crowley, B. E., Hughes, C. E., Lei, R., Cui, Y., Wood, M. L., Muldoon, K. M., Andriamialison, H., McGraw, J. J., Tomsho, L. P., Schuster, S. C., Miller, W., Louis, E. E., Yoder, A. D., Malhi, R. S. & Perry, G. H., Feb 1 2015, In : Journal of Human Evolution. 79, p. 45-54 10 p.

Research output: Contribution to journalArticle

DNA analysis of ancient dogs of the Americas: Identifying possible founding haplotypes and reconstructing population histories

Witt, K. E., Judd, K., Kitchen, A., Grier, C., Kohler, T. A., Ortman, S. G., Kemp, B. M. & Malhi, R. S., Feb 1 2015, In : Journal of Human Evolution. 79, p. 105-118 14 p.

Research output: Contribution to journalArticle

Engaging Native Americans in Genomics Research

Malhi, R. S. & Bader, A. C., Dec 1 2015, In : American Anthropologist. 117, 4, p. 743-744 2 p.

Research output: Contribution to journalLetter

Genomic evidence for the Pleistocene and recent population history of Native Americans

Raghavan, M., Steinrücken, M., Harris, K., Schiffels, S., Rasmussen, S., DeGiorgio, M., Albrechtsen, A., Valdiosera, C., Ávila-Arcos, M. C., Malaspinas, A. S., Eriksson, A., Moltke, I., Metspalu, M., Homburger, J. R., Wall, J., Cornejo, O. E., Moreno-Mayar, J. V., Korneliussen, T. S., Pierre, T., Rasmussen, M. & 81 others, Campos, P. F., De Barros Damgaard, P., Allentoft, M. E., Lindo, J., Metspalu, E., Rodríguez-Varela, R., Mansilla, J., Henrickson, C., Seguin-Orlando, A., Malmstöm, H., Stafford, T., Shringarpure, S. S., Moreno-Estrada, A., Karmin, M., Tambets, K., Bergström, A., Xue, Y., Warmuth, V., Friend, A. D., Singarayer, J., Valdes, P., Balloux, F., Leboreiro, I., Vera, J. L., Rangel-Villalobos, H., Pettener, D., Luiselli, D., Davis, L. G., Heyer, E., Zollikofer, C. P. E., Ponce De León, M. S., Smith, C. I., Grimes, V., Pike, K. A., Deal, M., Fuller, B. T., Arriaza, B., Standen, V., Luz, M. F., Ricaut, F., Guidon, N., Osipova, L., Voevoda, M. I., Posukh, O. L., Balanovsky, O., Lavryashina, M., Bogunov, Y., Khusnutdinova, E., Gubina, M., Balanovska, E., Fedorova, S., Litvinov, S., Malyarchuk, B., Derenko, M., Mosher, M. J., Archer, D., Cybulski, J., Petzelt, B., Mitchell, J., Worl, R., Norman, P. J., Parham, P., Kemp, B. M., Kivisild, T., Tyler-Smith, C., Sandhu, M. S., Crawford, M., Villems, R., Smith, D. G., Waters, M. R., Goebel, T., Johnson, J. R., Malhi, R. S., Jakobsson, M., Meltzer, D. J., Manica, A., Durbin, R., Bustamante, C. D., Song, Y. S., Nielsen, R. & Willerslev, E., Aug 21 2015, In : Science. 349, 6250, aab3884.

Research output: Contribution to journalArticle

Low mitochondrial DNA diversity in an ancient population from China: Insight into social organization at the fujia site

Dong, Y., Li, C., Luan, F., Li, Z., Li, H., Cui, Y., Zhou, H. & Malhi, R. S., Dec 1 2015, In : Human biology. 87, 1, p. 71-84 14 p.

Research output: Contribution to journalArticle

Primer genoma mitocondrial en restos humanos de la costa de Santa Cruz, Argentina

Translated title of the contribution: First complete mitochondrial genome sequence from human skeletal remains of the coast of Santa Cruz, ArgentinaMotti, J. M. B., Hagelberg, E., Lindo, J., Malhi, R. S., Bravi, C. M. & Guichón, R. A., Jan 1 2015, In : Magallania. 43, 2, p. 119-131 13 p.

Research output: Contribution to journalArticle

Response to comment on "Late Pleistocene human skeleton and mtDNA link paleoamericans and modern Native Americans"

Kemp, B. M., Lindo, J., Bolnick, D. A., Malhi, R. S. & Chatters, J. C., Feb 20 2015, In : Science. 347, 6224, p. 835b

Research output: Contribution to journalArticle

The ancestry and affiliations of Kennewick Man

Rasmussen, M., Sikora, M., Albrechtsen, A., Korneliussen, T. S., Moreno-Mayar, J. V., Poznik, G. D., Zollikofer, C. P. E., Ponce De León, M. S., Allentoft, M. E., Moltke, I., Jónsson, H., Valdiosera, C., Malhi, R. S., Orlando, L., Bustamante, C. D., Stafford, T. W., Meltzer, D. J., Nielsen, R. & Willerslev, E., Jun 18 2015, In : Nature. 523, 7561, p. 455-458 4 p.

Research output: Contribution to journalArticle

2014

Early Americans: Misstated results

Kennett, D. J., Asmerom, Y., Kemp, B. M., Polyak, V., Bolnick, D. A., Malhi, R. S. & Culleton, B. J., Jan 1 2014, In : Science. 345, 6195, 1 p.

Research output: Contribution to journalLetter

Introduction: Providing a venue for influential research in anthropological genomics

Malhi, R. S. & Kemp, B. M., Jan 1 2014, In : Human biology. 86, 1, 1 p.

Research output: Contribution to journalEditorial