20092019
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Research Output 2009 2019

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Article
2018

Complete genome sequences of streptococcus sobrinus SL1 (ATCC 33478 DSM 20742), NIDR 6715-7 (ATCC 27351), NIDR 6715-15 (ATCC 27352), and NCTC 10919 (ATCC 33402)

Sales, M. J., Herbert, W. G., Du, Y., Sandur, A. S., Stanley, N. M. & Jensen, P. A., Jul 26 2018, In : Microbiology Resource Announcements. 7, 3, e00804-18.

Research output: Contribution to journalArticle

National Institute of Dental and Craniofacial Research (U.S.)
Streptococcus sobrinus
Genome
Tooth
Bacteria

Designing Randomized DNA Sequences Free of Restriction Enzyme Recognition Sites

Storm, A. J. & Jensen, P. A., Jan 2018, In : Biotechnology Journal. 13, 1, 1700326.

Research output: Contribution to journalArticle

Synthetic Biology
Workflow
DNA
Enzymes
Gene Library
2017

Antibiotics Disrupt Coordination between Transcriptional and Phenotypic Stress Responses in Pathogenic Bacteria

Jensen, P. A., Zhu, Z. & van Opijnen, T., Aug 15 2017, In : Cell Reports. 20, 7, p. 1705-1716 12 p.

Research output: Contribution to journalArticle

Bacteria
Genes
Anti-Bacterial Agents
Bacterial Genes
Genetic Engineering
2015

Miniaturized Plate Readers for Low-Cost, High-Throughput Phenotypic Screening

Jensen, P. A., Dougherty, B. V., Moutinho, T. J. & Papin, J. A., Feb 24 2015, In : Journal of Laboratory Automation. 20, 1, p. 51-55 5 p.

Research output: Contribution to journalArticle

Density (optical)
Incubators
Screening
Throughput
Environmental chambers
2012

Metabolic network analysis predicts efficacy of FDA-approved drugs targeting the causative agent of a neglected tropical disease

Chavali, A. K., Blazier, A. S., Tlaxca, J. L., Jensen, P. A., Pearson, R. D. & Papin, J. A., Apr 27 2012, In : BMC Systems Biology. 6, 27.

Research output: Contribution to journalArticle

Neglected Diseases
Leishmania major
Metabolic Network
Network Analysis
United States Food and Drug Administration
2011

Functional integration of a metabolic network model and expression data without arbitrary thresholding

Jensen, P. A. & Papin, J. A., Feb 1 2011, In : Bioinformatics. 27, 4, p. 541-547 7 p., btq702.

Research output: Contribution to journalArticle

Functional Integration
Metabolic Network
Thresholding
Metabolic Networks and Pathways
Network Model

TIGER: Toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks

Jensen, P. A., Lutz, K. A. & Papin, J. A., Sep 23 2011, In : BMC Systems Biology. 5, 147.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Regulatory Networks
Genome
Genes
Transcriptional Regulation
2009
Systems Analysis
Metabolic Networks and Pathways
Genes
Systems analysis
Genome