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Research Output

2019

Droplet Tn-Seq combines microfluidics with Tn-Seq for identifying complex single-cell phenotypes

Thibault, D., Jensen, P. A., Wood, S., Qabar, C., Clark, S., Shainheit, M. G., Isberg, R. R. & van Opijnen, T., Dec 1 2019, In : Nature communications. 10, 1, 5729.

Research output: Contribution to journalArticle

Open Access

Laboratory exercise to measure restriction enzyme kinetics

Blassick, C., David, B., Storm, A., Jensen, P. & Jensen, K., Oct 31 2019, In : Journal of Microbiology and Biology Education. 20, 3, 1703.

Research output: Contribution to journalArticle

Open Access

Metabolic modeling of Streptococcus mutans reveals complex nutrient requirements of an oral pathogen

Jijakli, K. & Jensen, P. A., Jan 1 2019, In : mSystems. 4, 5, e00529.

Research output: Contribution to journalArticle

Open Access

The bare necessities: Uncovering essential and condition-critical genes with transposon sequencing

Shields, R. C. & Jensen, P. A., Apr 2019, In : Molecular Oral Microbiology. 34, 2, p. 39-50 12 p.

Research output: Contribution to journalReview article

2018

Complete genome sequences of streptococcus sobrinus SL1 (ATCC 33478 DSM 20742), NIDR 6715-7 (ATCC 27351), NIDR 6715-15 (ATCC 27352), and NCTC 10919 (ATCC 33402)

Sales, M. J., Herbert, W. G., Du, Y., Sandur, A. S., Stanley, N. M. & Jensen, P. A., Jul 26 2018, In : Microbiology Resource Announcements. 7, 3, e00804-18.

Research output: Contribution to journalArticle

Coupling fluxes, enzymes, and regulation in genome-scale metabolic models

Jensen, P. A., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 337-351 15 p. (Methods in Molecular Biology; vol. 1716).

Research output: Chapter in Book/Report/Conference proceedingChapter

Designing Randomized DNA Sequences Free of Restriction Enzyme Recognition Sites

Storm, A. J. & Jensen, P. A., Jan 2018, In : Biotechnology Journal. 13, 1, 1700326.

Research output: Contribution to journalArticle

2017

Antibiotics Disrupt Coordination between Transcriptional and Phenotypic Stress Responses in Pathogenic Bacteria

Jensen, P. A., Zhu, Z. & van Opijnen, T., Aug 15 2017, In : Cell Reports. 20, 7, p. 1705-1716 12 p.

Research output: Contribution to journalArticle

"Blinded" grading rubrics for bioengineering lab reports (work in progress)

Li, Y., Jensen, P. A., Jensen, P. A. & Jensen, K., Jun 24 2017, In : ASEE Annual Conference and Exposition, Conference Proceedings. 2017-June

Research output: Contribution to journalConference article

2016

Work in progress: Reviving a transport phenomena course by incorporating simulation and laboratory experiences

Pool, M., Bhargava, R., Jensen, P. A. & Jensen, K., Jun 26 2016, 2016 ASEE Annual Conference and Exposition. American Society for Engineering Education, Vol. 2016-June.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2015

Miniaturized Plate Readers for Low-Cost, High-Throughput Phenotypic Screening

Jensen, P. A., Dougherty, B. V., Moutinho, T. J. & Papin, J. A., Feb 24 2015, In : Journal of Laboratory Automation. 20, 1, p. 51-55 5 p.

Research output: Contribution to journalArticle

2012

Metabolic network analysis predicts efficacy of FDA-approved drugs targeting the causative agent of a neglected tropical disease

Chavali, A. K., Blazier, A. S., Tlaxca, J. L., Jensen, P. A., Pearson, R. D. & Papin, J. A., Apr 27 2012, In : BMC Systems Biology. 6, 27.

Research output: Contribution to journalArticle

2011

Functional integration of a metabolic network model and expression data without arbitrary thresholding

Jensen, P. A. & Papin, J. A., Feb 1 2011, In : Bioinformatics. 27, 4, p. 541-547 7 p., btq702.

Research output: Contribution to journalArticle

TIGER: Toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks

Jensen, P. A., Lutz, K. A. & Papin, J. A., Sep 23 2011, In : BMC Systems Biology. 5, 147.

Research output: Contribution to journalArticle

2009

A scalable systems analysis approach for regulated metabolic networks

Jensen, P. A. & Papin, J. A., Jan 1 2009, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009. IEEE Computer Society, p. 5464-5465 2 p. 5334060. (Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution