Patrick J Tranel

2025

Chromosome-level assemblies of Amaranthus palmeri, Amaranthus retroflexus, and Amaranthus hybridus allow for genomic comparisons and identification of a sex-determining region

Raiyemo, D. A., Montgomery, J. S., Cutti, L., Abdollahi, F., Llaca, V., Fengler, K., Lopez, A. J., Morran, S., Saski, C. A., Nelson, D. R., Patterson, E. L., Gaines, T. A. & Tranel, P. J., Feb 2025, In: Plant Journal. 121, 4, e70027.

Research output: Contribution to journal › Article › peer-review

Open Access

Different nontarget-site mechanisms underlie resistance to dicamba and 2,4-D in an Amaranthus tuberculatus population

Werle, I. S., Bobadilla, L. K., Raiyemo, D. A., Lopez, A. J., Mesquita Machado, F. & Tranel, P. J., 2025, (Accepted/In press) In: Pest Management Science.

Research output: Contribution to journal › Article › peer-review

Open Access

2024

Identification of candidate genes involved with dicamba resistance in waterhemp (Amaranthus tuberculatus) via transcriptomics analyses

Bobadilla, L. K. & Tranel, P. J., Mar 27 2024, In: Weed Science. 72, 2, p. 125 - 136 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Influence of gender and glyphosate resistance on Palmer amaranth growth and interference with cotton

Cahoon, C. W., Jordan, D. L., Tranel, P. J., York, A. C., Riggins, C., Seagroves, R., Inman, M., Everman, W. & Leon, R., Jun 2024, In: Crop, Forage and Turfgrass Management. 10, 1, e20272.

Research output: Contribution to journal › Article › peer-review

Mapping of flumioxazin tolerance in a snap bean diversity panel leads to the discovery of a master genomic region controlling multiple stress resistance genes

Saballos, A. I., Brooks, M. D., Tranel, P. J. & Williams, M. M., 2024, In: Frontiers in Plant Science. 15, 1404889.

Research output: Contribution to journal › Article › peer-review

Open Access

Resistance to protoporphyrinogen oxidase inhibitors in giant ragweed (Ambrosia trifida)

Faleco, F. A., Machado, F. M., Bobadilla, L. K., Tranel, P. J., Stoltenberg, D. & Werle, R., Dec 2024, In: Pest Management Science. 80, 12, p. 6211-6221 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Smooth pigweed (Amaranthus hybridus) and unresolved Amaranthus spp. from Brazil resistant to glyphosate exhibit the EPSPS TAP-IVS substitution

Sulzbach, E., Turra, G. M., Cutti, L., Kroth, L. V. E., Tranel, P. J., Merotto, A. & Markus, C., Jan 2024, In: Weed Science. 72, 1, p. 48-58 11 p.

Research output: Contribution to journal › Article › peer-review

2023

Comparative analysis of dioecious Amaranthus plastomes and phylogenomic implications within Amaranthaceae s.s.

Raiyemo, D. A. & Tranel, P. J., Dec 2023, In: BMC Ecology and Evolution. 23, 1, 15.

Research output: Contribution to journal › Article › peer-review

Open Access

Comparative transcriptomic analysis of male and females in the dioecious weeds Amaranthus palmeri and Amaranthus tuberculatus

Bobadilla, L. K., Baek, Y. & Tranel, P. J., Dec 2023, In: BMC Plant Biology. 23, 1, 339.

Research output: Contribution to journal › Article › peer-review

Open Access

Genomic profiling of dioecious Amaranthus species provides novel insights into species relatedness and sex genes

Raiyemo, D. A., Bobadilla, L. K. & Tranel, P. J., Dec 2023, In: BMC biology. 21, 1, 37.

Research output: Contribution to journal › Article › peer-review

Open Access

Inhibition profile of trifludimoxazin towards PPO2 target site mutations

Porri, A., Betz, M., Seebruck, K., Knapp, M., Johnen, P., Witschel, M., Aponte, R., Liebl, R., Tranel, P. J. & Lerchl, J., Feb 2023, In: Pest Management Science. 79, 2, p. 507-519 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Repeated evolution of herbicide resistance in Lolium multiflorum revealed by haplotype-resolved analysis of acetyl-CoA carboxylase

Brunharo, C. A. C. G. & Tranel, P. J., Dec 2023, In: Evolutionary Applications. 16, 12, p. 1969-1981 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2022

Characterization and inheritance of dicamba resistance in a multiple-resistant waterhemp (Amaranthus tuberculatus) population from Illinois

Bobadilla, L. K., Giacomini, D. A., Hager, A. G. & Tranel, P. J., Jan 25 2022, In: Weed Science. 70, 1, p. 4-13 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

In-field assessment of EPSPS amplification on fitness cost in mixed glyphosate-resistant and glyphosate-sensitive populations of Palmer amaranth (Amaranthus palmeri)

Cahoon, C. W., Jordan, D. L., Tranel, P. J., York, A. C., Riggins, C., Seagroves, R., Inman, M., Everman, W. & Leon, R., Nov 24 2022, In: Weed Science. 70, 6, p. 663-668 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Multiple Genomic Regions Govern Tolerance to Sulfentrazone in Snap Bean (Phaseolus Vulgaris L.)

Saballos, A., Soler-Garzón, A., Brooks, M., Hart, J. P., Lipka, A. E., Miklas, P., Peachey, R. E., Tranel, P. J. & Williams, M. M., Jun 1 2022, In: Frontiers in Agronomy. 4, 869770.

Research output: Contribution to journal › Article › peer-review

Open Access

Repeated origins, widespread gene flow, and allelic interactions of target-site herbicide resistance mutations

Kreiner, J. M., Sandler, G., Stern, A. J., Tranel, P. J., Weigel, D., Stinchcombe, J. R. & Wright, S. I., Jan 2022, In: eLife. 11, e70242.

Research output: Contribution to journal › Article › peer-review

Open Access

Target site resistance to acetolactate synthase inhibitors in a fall panicum (Panicum dichotomiflorum Michx.) accession from Wisconsin and its response to alternative herbicides

Nunes, J. J., Raiyemo, D. A., Arneson, N. J., Rosa, A. T., Tranel, P. J. & Werle, R., Feb 26 2022, In: Weed Technology. 36, 1, p. 48-55 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2021

Biologically effective dose of metribuzin applied preemergence and postemergence for the control of waterhemp (Amaranthus tuberculatus) with different mechanisms of resistance to photosystem II-inhibiting herbicides

Westerveld, D. B., Soltani, N., Hooker, D. C., Robinson, D. E., Tranel, P. J., Laforest, M. & Sikkema, P. H., Nov 30 2021, In: Weed Science. 69, 6, p. 631-641 11 p.

Research output: Contribution to journal › Article › peer-review

Distribution and validation of genotypic and phenotypic glyphosate and PPO-inhibitor resistance in Palmer amaranth (Amaranthus palmeri) from southwestern Nebraska

Oliveira, M. C., Giacomini, D. A., Arsenijevic, N., Vieira, G., Tranel, P. J. & Werle, R., Feb 2021, In: Weed Technology. 35, 1, p. 65-76 12 p.

Research output: Contribution to journal › Article › peer-review

Future efficacy of pre-emergence herbicides in corn (Zea mays) is threatened by more variable weather

Landau, C. A., Hager, A. G., Tranel, P. J., Davis, A. S., Martin, N. F. & Williams, M. M., Jun 2021, In: Pest Management Science. 77, 6, p. 2683-2689 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Genetic architecture underlying HPPD-inhibitor resistance in a Nebraska Amaranthus tuberculatus population

Murphy, B. P., Beffa, R. & Tranel, P. J., Nov 2021, In: Pest Management Science. 77, 11, p. 4884-4891 8 p.

Research output: Contribution to journal › Article › peer-review

Genomic-based epidemiology reveals independent origins and gene flow of glyphosate resistance in Bassia scoparia populations across North America

Ravet, K., Sparks, C. D., Dixon, A. L., Küpper, A., Westra, E. P., Pettinga, D. J., Tranel, P. J., Felix, J., Morishita, D. W., Jha, P., Kniss, A., Stahlman, P. W., Neve, P., Patterson, E. L., Westra, P. & Gaines, T. A., Nov 2021, In: Molecular ecology. 30, 21, p. 5343-5359 17 p.

Research output: Contribution to journal › Article › peer-review

Open Access

How many ways can nature kill the goose that laid the golden egg? – the many mechanisms of evolved glyphosate resistance

Duke, S. O., Heap, I., Tranel, P. J. & Bobadilla, L. K., Oct 2021, In: Outlooks on Pest Management. 32, 5, p. 197-202 6 p.

Research output: Contribution to journal › Article › peer-review

Male-specific Y-chromosomal regions in waterhemp (Amaranthus tuberculatus) and Palmer amaranth (Amaranthus palmeri)

Montgomery, J. S., Giacomini, D. A., Weigel, D. & Tranel, P. J., Mar 2021, In: New Phytologist. 229, 6, p. 3522-3533 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Molecular confirmation of resistance to PPO inhibitors in Amaranthus tuberculatus and Amaranthus palmeri, and isolation of the G399A PPO2 substitution in A. palmeri

Montgomery, J. S., Giacomini, D. A. & Tranel, P. J., Feb 2021, In: Weed Technology. 35, 1, p. 99-105 7 p.

Research output: Contribution to journal › Article › peer-review

Target-Site Mutations and Expression of ALS Gene Copies Vary According to Echinochloa Species

Panozzo, S., Mascanzoni, E., Scarabel, L., Milani, A., Dalazen, G., Merotto, A. J., Tranel, P. J. & Sattin, M., Nov 2021, In: Genes. 12, 11, 1841.

Research output: Contribution to journal › Article › peer-review

Open Access

The genetic architecture and population genomic signatures of glyphosate resistance in Amaranthus tuberculatus

Kreiner, J. M., Tranel, P. J., Weigel, D., Stinchcombe, J. R. & Wright, S. I., Nov 2021, In: Molecular ecology. 30, 21, p. 5373-5389 17 p.

Research output: Contribution to journal › Article › peer-review

2020

Coexpression clusters and allele-specific expression in metabolism-based herbicide resistance

Giacomini, D. A., Patterson, E. L., Küpper, A., Beffa, R., Gaines, T. A. & Tranel, P. J., 2020, In: Genome biology and evolution. 12, 12, p. 2267-2278 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Comparing responses of sensitive and resistant populations of Palmer amaranth (Amaranthus palmeri) and waterhemp (Amaranthus tuberculatus var. rudis) to PPO inhibitors

Lillie, K. J., Giacomini, D. A. & Tranel, P. J., 2020, In: Weed Technology. 34, 1, p. 140-146 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Draft genomes of amaranthus tuberculatus, amaranthus hybridus, and amaranthus palmeri

Montgomery, J. S., Giacomini, D., Waithaka, B., Lanz, C., Murphy, B. P., Campe, R., Lerchl, J., Landes, A., Gatzmann, F., Janssen, A., Antonise, R., Patterson, E., Weigel, D. & Tranel, P. J., 2020, In: Genome biology and evolution. 12, 11, p. 1988-1993 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Genetic variation associated with PPO-inhibiting herbicide tolerance in sorghum

Adhikari, P., Goodrich, E., Fernandes, S. B., Lipka, A. E., Tranel, P., Brown, P. & Jamann, T. M., Oct 14 2020, In: PloS one. 15, 10 October, p. e0233254 e0233254.

Research output: Contribution to journal › Article › peer-review

Open Access

2019

Characterization of a waterhemp (Amaranthus tuberculatus) population from Illinois resistant to herbicides from five site-of-action groups

Evans, C. M., Strom, S. A., Riechers, D. E., Davis, A. S., Tranel, P. J. & Hager, A. G., Jun 1 2019, In: Weed Technology. 33, 3, p. 400-410 11 p.

Research output: Contribution to journal › Article › peer-review

Coevolution of resistance to PPO inhibitors in waterhemp (Amaranthus tuberculatus) and Palmer amaranth (Amaranthus palmeri)

Lillie, K. J., Giacomini, D. A., Green, J. D. & Tranel, P. J., Sep 1 2019, In: Weed Science. 67, 5, p. 521-526 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Empirical investigation of mutation rate for herbicide resistance

Casale, F. A., Giacomini, D. A. & Tranel, P. J., Jul 1 2019, In: Weed Science. 67, 4, p. 361-368 8 p.

Research output: Contribution to journal › Article › peer-review

Multiple modes of convergent adaptation in the spread of glyphosate-resistant Amaranthus tuberculatus

Kreiner, J. M., Giacomini, D. A., Bemm, F., Waithaka, B., Regalado, J., Lanz, C., Hildebrandt, J., Sikkema, P. H., Tranel, P. J., Weigel, D., Stinchcombe, J. R. & Wright, S. I., Oct 15 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 42, p. 21076-21084 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Sex-specific markers for waterhemp (Amaranthus tuberculatus) and Palmer amaranth (Amaranthus palmeri)

Montgomery, J. S., Sadeque, A., Giacomini, D. A., Brown, P. J. & Tranel, P. J., Jul 1 2019, In: Weed Science. 67, 4, p. 412-418 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Survey of glyphosate-, atrazine- and lactofen-resistance mechanisms in Ohio waterhemp (Amaranthus tuberculatus) populations

Murphy, B. P., Larran, A. S., Ackley, B., Loux, M. M. & Tranel, P. J., May 1 2019, In: Weed Science. 67, 3, p. 296-302 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Target-site mutations conferring herbicide resistance

Murphy, B. P. & Tranel, P. J., Oct 2019, In: Plants. 8, 10, 382.

Research output: Contribution to journal › Article › peer-review

Open Access

The Draft Genome of Kochia scoparia and the Mechanism of Glyphosate Resistance via Transposon-Mediated EPSPS Tandem Gene Duplication

Patterson, E. L., Saski, C. A., Sloan, D. B., Tranel, P. J., Westra, P., Gaines, T. A. & Gaut, B., Oct 1 2019, In: Genome biology and evolution. 11, 10, p. 2927-2940 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2018

Confronting herbicide resistance with cooperative management

Evans, J. A., Williams, A., Hager, A. G., Mirsky, S. B., Tranel, P. J. & Davis, A. S., Nov 2018, In: Pest Management Science. 74, 11, p. 2424-2431 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Distribution of PPX2 Mutations Conferring PPO-Inhibitor Resistance in Palmer Amaranth Populations of Tennessee

Copeland, J. D., Giacomini, D. A., Tranel, P. J., Montgomery, G. B. & Steckel, L. E., Oct 2018, In: Weed Technology. 32, 5, p. 592-596 5 p.

Research output: Contribution to journal › Article › peer-review

Glyphosate-Resistant Junglerice (Echinochloa colona) from Mississippi and Tennessee: Magnitude and Resistance Mechanisms

Nandula, V. K., Montgomery, G. B., Vennapusa, A. R., Jugulam, M., Giacomini, D. A., Ray, J. D., Bond, J. A., Steckel, L. E. & Tranel, P. J., Sep 1 2018, In: Weed Science. 66, 5, p. 603-610 8 p.

Research output: Contribution to journal › Article › peer-review

Identification and validation of Amaranthus species-specific snps within the ITS region: Applications in quantitative species identification

Murphy, B. P. & Tranel, P. J., Jan 1 2018, In: Crop Science. 58, 1, p. 304-311 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Limited fitness costs of herbicide-resistance traits in Amaranthus tuberculatus facilitate resistance evolution

Wu, C., Davis, A. S. & Tranel, P. J., Feb 2018, In: Pest Management Science. 74, 2, p. 293-301 9 p.

Research output: Contribution to journal › Article › peer-review

Metabolism of 2,4-dichlorophenoxyacetic acid contributes to resistance in a common waterhemp (Amaranthus tuberculatus) population

Figueiredo, M. R. A., Leibhart, L. J., Reicher, Z. J., Tranel, P. J., Nissen, S. J., Westra, P., Bernards, M. L., Kruger, G. R., Gaines, T. A. & Jugulam, M., Oct 2018, In: Pest Management Science. 74, 10, p. 2356-2362 7 p.

Research output: Contribution to journal › Article › peer-review

Tembotrione detoxification in 4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibitor-resistant Palmer amaranth (Amaranthus palmeri S. Wats.)

Küpper, A., Peter, F., Zöllner, P., Lorentz, L., Tranel, P. J., Beffa, R. & Gaines, T. A., Oct 2018, In: Pest Management Science. 74, 10, p. 2325-2334 10 p.

Research output: Contribution to journal › Article › peer-review

The power and potential of genomics in weed biology and management

Ravet, K., Patterson, E. L., Krähmer, H., Hamouzová, K., Fan, L., Jasieniuk, M., Lawton-Rauh, A., Malone, J. M., McElroy, J. S., Merotto, A., Westra, P., Preston, C., Vila-Aiub, M. M., Busi, R., Tranel, P. J., Reinhardt, C., Saski, C., Beffa, R., Neve, P. & Gaines, T. A., Oct 2018, In: Pest Management Science. 74, 10, p. 2216-2225 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2017

A quantitative assay for Amaranthus palmeri identification

Murphy, B. P., Plewa, D. E., Phillippi, E., Bissonnette, S. M. & Tranel, P. J., Nov 2017, In: Pest Management Science. 73, 11, p. 2221-2224 4 p.

Research output: Contribution to journal › Article › peer-review

Control of Glyphosate-Resistant Common waterhemp (Amaranthus rudis) in Three New Herbicide-Resistant Soybean Varieties in Ontario

Schryver, M. G., Soltani, N., Hooker, D. C., Robinson, D. E., Tranel, P. J. & Sikkema, P. H., Dec 2017, In: Weed Technology. 31, 6, p. 828-837 10 p.

Research output: Contribution to journal › Article › peer-review

Control of Glyphosate-Resistant Common Waterhemp (Amaranthus tuberculatus var. rudis) in Soybean in Ontario

Schryver, M. G., Soltani, N., Hooker, D. C., Robinson, D. E., Tranel, P. J. & Sikkema, P. H., Dec 2017, In: Weed Technology. 31, 6, p. 811-821 11 p.

Research output: Contribution to journal › Article › peer-review

Patrick J Tranel

Research output

Search results