Nigel D Goldenfeld

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2019

Evidence for photoinduced sliding of the charge-order condensate in La1.875Ba0.125CuO4

Mitrano, M., Lee, S., Husain, A. A., Zhu, M., Munoz, G. D. L. P., Sun, S. X. L., Joe, Y. I., Reid, A. H., Wandel, S. F., Coslovich, G., Schlotter, W., Van Driel, T., Schneeloch, J., Gu, G. D., Goldenfeld, N. & Abbamonte, P., Nov 18 2019, In : Physical Review B. 100, 20, 205125.

Research output: Contribution to journalArticle

Three-body interactions drive the transition to polar order in a simple flocking model

Chatterjee, P. & Goldenfeld, N., Oct 30 2019, In : Physical Review E. 100, 4, 040602.

Research output: Contribution to journalArticle

Ultrafast time-resolved x-ray scattering reveals diffusive charge order dynamics in La2-xBaxCuO4

Mitrano, M., Lee, S., Husain, A. A., Delacretaz, L., Zhu, M., De La Peña Munoz, G., Sun, S. X. L., Joe, Y. I., Reid, A. H., Wandel, S. F., Coslovich, G., Schlotter, W., Van Driel, T., Schneeloch, J., Gu, G. D., Hartnoll, S., Goldenfeld, N. & Abbamonte, P., Aug 16 2019, In : Science advances. 5, 8, eaax3346.

Research output: Contribution to journalArticle

Open Access
2018

Biophysical constraints determine the selection of phenotypic fluctuations during directed evolution

Shih, H. Y., Mickalide, H., Fraebel, D. T., Goldenfeld, N. & Kuehn, S., Jul 17 2018, In : Physical Biology. 15, 6, 065003.

Research output: Contribution to journalArticle

Stochastic Turing patterns in a synthetic bacterial population

Karig, D., Michael Martini, K., Lu, T., DeLateur, N. A., Goldenfeld, N. & Weiss, R., Jun 26 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 26, p. 6572-6577 6 p.

Research output: Contribution to journalArticle

Testing the retroelement invasion hypothesis for the emergence of the ancestral eukaryotic cell

Lee, G., Sherer, N. A., Kim, N. H., Rajic, E., Kaur, D., Urriola, N., Michael Martini, K., Xue, C., Goldenfeld, N. & Kuhlman, T. E., Dec 4 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 49, p. 12465-12470 6 p.

Research output: Contribution to journalArticle

2017

A statistical mechanical phase transition to turbulence in a model shear flow

Goldenfeld, N., Nov 10 2017, In : Journal of Fluid Mechanics. 830, p. 1-4 4 p.

Research output: Contribution to journalArticle

Coevolution Maintains Diversity in the Stochastic "kill the Winner" Model

Xue, C. & Goldenfeld, N., Dec 28 2017, In : Physical review letters. 119, 26, 268101.

Research output: Contribution to journalArticle

Giant Amplification of Noise in Fluctuation-Induced Pattern Formation

Biancalani, T., Jafarpour, F. & Goldenfeld, N., Jan 3 2017, In : Physical review letters. 118, 1, 018101.

Research output: Contribution to journalArticle

Noise-induced symmetry breaking far from equilibrium and the emergence of biological homochirality

Jafarpour, F., Biancalani, T. & Goldenfeld, N., Mar 10 2017, In : Physical Review E. 95, 3, 032407.

Research output: Contribution to journalArticle

Turbulence as a Problem in Non-equilibrium Statistical Mechanics

Goldenfeld, N. & Shih, H. Y., May 1 2017, In : Journal of Statistical Physics. 167, 3-4, p. 575-594 20 p.

Research output: Contribution to journalArticle

Universal biology and the statistical mechanics of early life

Goldenfeld, N., Biancalani, T. & Jafarpour, F., Dec 28 2017, In : Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. 375, 2109, 20160341.

Research output: Contribution to journalArticle

2016

Capturing one of the human gut microbiome's most wanted: Reconstructing the genome of a novel butyrate-producing, clostridial scavenger from metagenomic sequence data

Jeraldo, P., Hernandez, A., Nielsen, H. B., Chen, X., White, B. A., Goldenfeld, N., Nelson, H., Alhquist, D., Boardman, L. & Chia, N., 2016, In : Frontiers in Microbiology. 7, MAY, 783.

Research output: Contribution to journalArticle

Ecological collapse and the emergence of travelling waves at the onset of shear turbulence

Shih, H. Y., Hsieh, T. L. & Goldenfeld, N., Mar 1 2016, In : Nature Physics. 12, 3, p. 245-248 4 p.

Research output: Contribution to journalArticle

Nonlinear elastic effects in phase field crystal and amplitude equations: Comparison to ab initio simulations of bcc metals and graphene

Hüter, C., Friák, M., Weikamp, M., Neugebauer, J., Goldenfeld, N., Svendsen, B. & Spatschek, R., Jun 8 2016, In : Physical Review B. 93, 21, 214105.

Research output: Contribution to journalArticle

Real-time transposable element activity in individual live cells

Kim, N. H., Leea, G., Sherer, N. A., Martini, K. M., Goldenfeld, N. & Kuhlman, T. E., Jun 28 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 26, p. 7278-7283 6 p.

Research output: Contribution to journalArticle

Stochastic predator-prey dynamics of transposons in the human genome

Xue, C. & Goldenfeld, N., Nov 10 2016, In : Physical review letters. 117, 20, 208101.

Research output: Contribution to journalArticle

Tricritical spiral vortex instability in cross-slot flow

Haward, S. J., Poole, R. J., Alves, M. A., Oliveira, P. J., Goldenfeld, N. & Shen, A. Q., Mar 9 2016, In : Physical Review E. 93, 3, 031101.

Research output: Contribution to journalArticle

2015

Caste-specific differences in hindgut microbial communities of honey bees (Apis mellifera)

Kapheim, K. M., Rao, V. D., Yeoman, C. J., Wilson, B. A., White, B. A., Goldenfeld, N. & Robinson, G. E., Apr 15 2015, In : PloS one. 10, 4, e0123911.

Research output: Contribution to journalArticle

Noise-Induced Mechanism for Biological Homochirality of Early Life Self-Replicators

Jafarpour, F., Biancalani, T. & Goldenfeld, N., Oct 8 2015, In : Physical review letters. 115, 15, 158101.

Research output: Contribution to journalArticle

2014

Automated monitoring reveals extreme interindividual variation and plasticity in honeybee foraging activity levels

Tenczar, P., Lutz, C. C., Rao, V. D., Goldenfeld, N. & Robinson, G. E., Sep 2014, In : Animal Behaviour. 95, p. 41-48 8 p.

Research output: Contribution to journalArticle

Diet and exercise orthogonally alter the gut microbiome and reveal independent associations with anxiety and cognition

Kang, S. S., Jeraldo, P. R., Kurti, A., Miller, M. E. B., Cook, M. D., Whitlock, K., Goldenfeld, N., Woods, J. A., White, B. A., Chia, N. & Fryer, J. D., Sep 13 2014, In : Molecular Neurodegeneration. 9, 1, 36.

Research output: Contribution to journalArticle

Intermittent dislocation density fluctuations in crystal plasticity from a phase-field crystal model

Tarp, J. M., Angheluta, L., Mathiesen, J. & Goldenfeld, N., Dec 31 2014, In : Physical review letters. 113, 26, 265503.

Research output: Contribution to journalArticle

2013

Determination of the universality class of crystal plasticity

Tsekenis, G., Uhl, J. T., Goldenfeld, N. & Dahmen, K. A., Feb 1 2013, In : EPL. 101, 3, 36003.

Research output: Contribution to journalArticle

Extrinsic noise driven phenotype switching in a self-regulating gene

Assaf, M., Roberts, E., Luthey-Schulten, Z. & Goldenfeld, N., Aug 2 2013, In : Physical review letters. 111, 5, p. 58102 1 p., 058102.

Research output: Contribution to journalArticle

2012

Anisotropic velocity statistics of topological defects under shear flow

Angheluta, L., Jeraldo, P. & Goldenfeld, N., Jan 31 2012, In : Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 85, 1, 011153.

Research output: Contribution to journalArticle

Distribution of maximum velocities in avalanches near the depinning transition

Leblanc, M., Angheluta, L., Dahmen, K. & Goldenfeld, N., Sep 4 2012, In : Physical review letters. 109, 10, 105702.

Research output: Contribution to journalArticle

Effect of weak rotation on large-scale circulation cessations in turbulent convection

Assaf, M., Angheluta, L. & Goldenfeld, N., Aug 16 2012, In : Physical review letters. 109, 7, 074502.

Research output: Contribution to journalArticle

Evolutionary constraints on visual cortex architecture from the dynamics of hallucinations

Butler, T. C., Benayoun, M., Wallace, E., Van Drongelenc, W., Goldenfelda, N. & Cowane, J., Jan 10 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 2, p. 606-609 4 p.

Research output: Contribution to journalArticle

Quantification of the relative roles of niche and neutral processes in structuring gastrointestinal microbiomes

Jeraldo, P., Sipos, M., Chia, N., Brulc, J. M., Dhillon, A. S., Konkel, M. E., Larson, C. L., Nelson, K. E., Qu, A., Schook, L. B., Yang, F., White, B. A. & Goldenfeld, N., Jun 19 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 25, p. 9692-9698 7 p.

Research output: Contribution to journalArticle

Testing a missing spectral link in turbulence

Kellay, H., Tran, T., Goldburg, W., Goldenfeld, N., Gioia, G. & Chakraborty, P., Dec 20 2012, In : Physical review letters. 109, 25, 254502.

Research output: Contribution to journalArticle

Tsekenis, Goldenfeld, and Dahmen reply:

Tsekenis, G., Goldenfeld, N. D. & Dahmen, K. A., Jun 28 2012, In : Physical review letters. 108, 26, 269602.

Research output: Contribution to journalArticle

2011

Cellulosomics, a gene-centric approach to investigating the intraspecific diversity and adaptation of ruminococcus flavefaciens within the rumen

Brulc, J. M., Yeoman, C. J., Wilson, M. K., Miller, M. E., Jeraldo, P., Jindou, S., Goldenfeld, N., Flint, H. J., Lamed, R., Borovok, I., Vodovnik, M., Nelson, K. E., Bayer, E. A. & White, B. A., Oct 17 2011, In : PloS one. 6, 10, e25329.

Research output: Contribution to journalArticle

Dislocations jam at any density

Tsekenis, G., Goldenfeld, N. & Dahmen, K. A., Mar 8 2011, In : Physical review letters. 106, 10, 105501.

Research output: Contribution to journalArticle

Effect of Coulombic friction on spatial displacement statistics

Menzel, A. M. & Goldenfeld, N., Jul 18 2011, In : Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 84, 1, 011122.

Research output: Contribution to journalArticle

Fluctuation-driven Turing patterns

Butler, T. & Goldenfeld, N., Jul 11 2011, In : Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 84, 1, 011112.

Research output: Contribution to journalArticle

On the suitability of short reads of 16S rRNA for phylogeny-based analyses in environmental surveys

Jeraldo, P., Chia, N. & Goldenfeld, N., Nov 1 2011, In : Environmental Microbiology. 13, 11, p. 3000-3009 10 p.

Research output: Contribution to journalArticle

Rare fluctuations and large-scale circulation cessations in turbulent convection

Assaf, M., Angheluta, L. & Goldenfeld, N., Jul 19 2011, In : Physical review letters. 107, 4, 044502.

Research output: Contribution to journalArticle

Theory of cooperation in a micro-organismal snowdrift game

Wang, Z. & Goldenfeld, N., Aug 26 2011, In : Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 84, 2, 020902.

Research output: Contribution to journalArticle

2010

Emergence of foams from the breakdown of the phase field crystal model

Guttenberg, N., Goldenfeld, N. & Dantzig, J., Jun 9 2010, In : Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 81, 6, 065301.

Research output: Contribution to journalArticle

Extreme fluctuations and the finite lifetime of the turbulent state

Goldenfeld, N., Guttenberg, N. & Gioia, G., Mar 23 2010, In : Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 81, 3, 035304.

Research output: Contribution to journalArticle