Research Output 2002 2017

2017

A dynamic regression analysis tool for quantitative assessment of bacterial growth written in Python

Hoeflinger, J. L., Hoeflinger, D. E. & Miller, M. J. Jan 1 2017 In : Journal of Microbiological Methods. 132, p. 83-85 3 p.

Research output: Research - peer-reviewArticle

Boidae
Regression Analysis
Growth
Lactobacillus
Carbohydrates

Cronobacter sakazakii ATCC 29544 autoaggregation requires flic flagellation, not motility

Hoeflinger, J. L. & Miller, M. J. Feb 28 2017 In : Frontiers in Microbiology. 8, FEB, 301

Research output: Research - peer-reviewArticle

Cronobacter sakazakii
Flagella
Proteins
Flagellin
Gene Knockout Techniques
Clostridium saccharoperbutylacetonicum
metabolic engineering
butanol
methodology
Metabolic Engineering

Dietary broccoli alters rat cecal microbiota to improve glucoraphanin hydrolysis to bioactive isothiocyanates

Liu, X., Wang, Y., Hoeflinger, J. L., Neme, B. P., Jeffery, E. H. & Miller, M. J. Mar 10 2017 In : Nutrients. 9, 3, 262

Research output: Research - peer-reviewArticle

glucoraphanin
isothiocyanates
broccoli
hydrolysis
rats

Draft genome sequence of the murine bacterial isolate Lactobacillus murinus EF-1

Fritz, E. & Miller, M. J. 2017 In : Genome Announcements. 5, 12, e00077-17

Research output: Research - peer-reviewArticle

Peptide Elongation Factor 1
Lactobacillus
Genome
Prophages
Base Composition

Hot topic: Antilisterial activity by endolysin PlyP100 in fresh cheese

Van Tassell, M. L., Ibarra-Sánchez, L. A., Hoepker, G. P. & Miller, M. J. Apr 1 2017 In : Journal of Dairy Science. 100, 4, p. 2482-2487 6 p.

Research output: Research - peer-reviewArticle

endolysin
fresh cheeses
Cheese
Listeria monocytogenes
Food

Human milk oligosaccharide consumption by probiotic and human-associated bifidobacteria and lactobacilli

Thongaram, T., Hoeflinger, J. L., Chow, J. M. & Miller, M. J. Oct 1 2017 In : Journal of Dairy Science. 100, 10, p. 7825-7833 9 p.

Research output: Research - peer-reviewArticle

Bifidobacterium
Probiotics
Lactobacillus
Human Milk
Oligosaccharides

Invited review: Hispanic-style cheeses and their association with Listeria monocytogenes

Ibarra-Sánchez, L. A., Van Tassell, M. L. & Miller, M. J. Apr 1 2017 In : Journal of Dairy Science. 100, 4, p. 2421-2432 12 p.

Research output: Research - peer-reviewArticle

Cheese
Listeria monocytogenes
Hispanic Americans
cheeses
Pasteurization

Molecular weight distribution and fermentation of mechanically pre-treated konjac enzymatic hydrolysates

Yang, J., Vittori, N., Wang, W., Shi, Y. C., Hoeflinger, J. L., Miller, M. J. & Pan, Y. Mar 1 2017 In : Carbohydrate Polymers. 159, p. 58-65 8 p.

Research output: Research - peer-reviewArticle

Molecular weight distribution
Fermentation
Molecular weight
konjac gluco-mannan
Fermenters

Prebiotic Galactooligosaccharide Metabolism by Probiotic Lactobacilli and Bifidobacteria

Thongaram, T., Hoeflinger, J. L., Chow, J. & Miller, M. J. May 24 2017 In : Journal of Agricultural and Food Chemistry. 65, 20, p. 4184-4192 9 p.

Research output: Research - peer-reviewArticle

Lactobacillus acidophilus
Prebiotics
Bifidobacterium
Probiotics
Lactobacillus
2016

Creative lysins: Listeria and the engineering of antimicrobial enzymes

Van Tassell, M. L., Angela Daum, M., Kim, J. S. & Miller, M. J. Feb 1 2016 In : Current Opinion in Biotechnology. 37, p. 88-96 9 p.

Research output: Research - peer-reviewReview article

Listeria
Biotechnology
Enzymes
Proteins
Protein Engineering
Campylobacter jejuni
Intestines
Chickens
Genome
Lactobacillus crispatus

Prebiotics and bioactive milk fractions affect gut development, microbiota, and neurotransmitter expression in piglets

Berding, K., Wang, M., Monaco, M. H., Alexander, L. S., Mudd, A. T., Chichlowski, M., Waworuntu, R. V., Berg, B. M., Miller, M. J., Dilger, R. N. & Donovan, S. M. 2016 In : Journal of Pediatric Gastroenterology and Nutrition. 63, 6, p. 688-697 10 p.

Research output: Research - peer-reviewArticle

Prebiotics
Neurotransmitter Agents
Milk
Diet
Gastrointestinal Microbiome
2015

Characterization of the intestinal lactobacilli community following galactooligosaccharides and polydextrose supplementation in the neonatal piglet

Hoeflinger, J. L., Kashtanov, D. O., Cox, S. B., Dowd, S. E., Jouni, Z. E., Donovan, S. M. & Miller, M. J. Aug 14 2015 In : PLoS ONE. 10, 8, e0135494

Research output: Research - peer-reviewArticle

galactooligosaccharides
Lactobacillus
piglets
polydextrose
Prebiotics

Galacto-oligosaccharides may directly enhance intestinal barrier function through the modulation of goblet cells

Bhatia, S., Prabhu, P. N., Benefiel, A. C., Miller, M. J., Chow, J., Davis, S. R. & Gaskins, H. R. Mar 1 2015 In : Molecular Nutrition and Food Research. 59, 3, p. 566-573 8 p.

Research output: Research - peer-reviewArticle

galactooligosaccharides
goblet cells
Goblet Cells
Oligosaccharides
resistin

In vitro impact of human milk oligosaccharides on Enterobacteriaceae growth

Hoeflinger, J. L., Davis, S. R., Chow, J. & Miller, M. J. Apr 1 2015 In : Journal of Agricultural and Food Chemistry. 63, 12, p. 3295-3302 8 p.

Research output: Research - peer-reviewArticle

Human Milk
Enterobacteriaceae
Oligosaccharides
Growth
In Vitro Techniques

Maternal fucosyltransferase 2 status affects the gut bifidobacterial communities of breastfed infants

Lewis, Z. T., Totten, S. M., Smilowitz, J. T., Popovic, M., Parker, E., Lemay, D. G., Van Tassell, M. L., Miller, M. J., Jin, Y. S., German, J. B., Lebrilla, C. B. & Mills, D. A. Apr 10 2015 In : Microbiome. 3, 1, 13

Research output: Research - peer-reviewArticle

Mothers
galactoside 2-alpha-L-fucosyltransferase
Bifidobacterium
Oligosaccharides
Feces

Myrosinase-dependent and –independent formation and control of isothiocyanate products of glucosinolate hydrolysis

Angelino, D., Dosz, E. B., Sun, J., Hoeflinger, J. L., Van Tassell, M. L., Chen, P., Harnly, J. M., Miller, M. J. & Jeffery, E. H. Oct 6 2015 In : Frontiers in Plant Science. 6, OCTOBER, 831

Research output: Research - peer-reviewArticle

thioglucosidase
isothiocyanates
glucosinolates
hydrolysis
thiols

Use of a miniature laboratory fresh cheese model for investigating antimicrobial activities

Van Tassell, M. L., Ibarra-Sánchez, L. A., Takhar, S. R., Amaya-Llano, S. L. & Miller, M. J. Dec 1 2015 In : Journal of Dairy Science. 98, 12, p. 8515-8524 10 p.

Research output: Research - peer-reviewArticle

fresh cheeses
Listeria monocytogenes
anti-infective agents
Cheese
ferulic acid
2014

A piglet model for studying Candida albicans colonization of the human oro-gastrointestinal tract

Hoeflinger, J. L., Coleman, D. A., Oh, S. H., Miller, M. J. & Hoyer, L. L. 2014 In : FEMS Microbiology Letters. 357, 1, p. 10-15 6 p.

Research output: Research - peer-reviewArticle

Candida albicans
Gastrointestinal Tract
Swine
Microbiota
Esophagus

Glycan-specific whole cell affinity chromatography: A versatile microbial adhesion platform

Van Tassell, M. L., Price, N. P. J. & Miller, M. J. 2014 In : MethodsX. 1, p. 244-250 7 p.

Research output: Research - peer-reviewArticle

Affinity Chromatography
Polysaccharides
Adhesion
Microbial Interactions
Culture Techniques

Human milk oligosaccharides shorten rotavirus-induced diarrhea and modulate piglet mucosal immunity and colonic microbiota

Li, M., Monaco, M. H., Wang, M., Comstock, S. S., Kuhlenschmidt, T. B., Fahey, G. C., Miller, M. J., Kuhlenschmidt, M. S. & Donovan, S. M. 2014 In : ISME Journal. 8, 8, p. 1609-1620 12 p.

Research output: Research - peer-reviewArticle

mucosal immunity
Rotavirus
breast milk
oligosaccharides
piglets
2013

Methylphenidate prevents high-fat diet (HFD)-induced learning/memory impairment in juvenile mice

Kaczmarczyk, M. M., Machaj, A. S., Chiu, G. S., Lawson, M. A., Gainey, S. J., York, J. M., Meling, D. D., Martin, S. A., Kwakwa, K. A., Newman, A. F., Woods, J. A., Kelley, K. W., Wang, Y., Miller, M. J. & Freund, G. G. Sep 2013 In : Psychoneuroendocrinology. 38, 9, p. 1553-1564 12 p.

Research output: Research - peer-reviewArticle

Methylphenidate
High Fat Diet
Learning
Anxiety
Overnutrition
pork industry
pork
food safety
pathogens
Food Safety

Short communication: Phenotypic and genetic diversity of wild lactococcus lactis isolated from traditional pecorino cheeses of tuscany

Turchi, B., Van Tassell, M. L., Lee, A., Nuvoloni, R., Cerri, D. & Miller, M. J. Jun 2013 In : Journal of Dairy Science. 96, 6, p. 3558-3563 6 p.

Research output: Research - peer-reviewArticle

Lactococcus lactis
cheeses
Italy
genetic variation
Lactococcus
2012

Characterization of a Panela cheese with added probiotics and fava bean starch

Escobar, M. C., Van Tassell, M. L., Martínez-Bustos, F., Singh, M., Castaño-Tostado, E., Amaya-Llano, S. L. & Miller, M. J. Jun 2012 In : Journal of Dairy Science. 95, 6, p. 2779-2787 9 p.

Research output: Research - peer-reviewArticle

faba beans
probiotics
cheeses
starch
Lactobacillus rhamnosus

Consumption of different soymilk formulations differentially affects the gut microbiomes of overweight and obese men

Fernandez-Raudales, D., Hoeflinger, J. L., Bringe, N. A., Cox, S. B., Dowd, S. E., Miller, M. J. & de Mejia, E. G. Nov 2012 In : Gut Microbes. 3, 6, p. 490-500 11 p.

Research output: Research - peer-reviewArticle

glycinin
Gastrointestinal Microbiome
Glycine max beta-conglycinin protein
Prevotella
Bacteroidetes

Development of a Lactobacillus specific T-RFLP method to determine lactobacilli diversity in complex samples

Chen, L., Teasdale, M. T., Kaczmarczyk, M. M., Freund, G. G. & Miller, M. J. Nov 2012 In : Journal of Microbiological Methods. 91, 2, p. 262-268 7 p.

Research output: Research - peer-reviewArticle

Lactobacillus
Restriction Fragment Length Polymorphisms
DNA Restriction Enzymes
Dietary Supplements
Ribosomal DNA

Identification of lactose phosphotransferase systems in Lactobacillus gasseri ATCC 33323 required for lactose utilization

Francl, A. L., Hoeflinger, J. L. & Miller, M. J. Apr 2012 In : Microbiology. 158, 4, p. 944-952 9 p.

Research output: Research - peer-reviewArticle

Lactose
Phosphotransferases
Lactobacillus gasseri
Growth
Genes
Dietary Fiber
Insurance Benefits
Colonic Neoplasms
Type 2 Diabetes Mellitus
Gastrointestinal Tract

Whole cell biosynthesis of a functional oligosaccharide, 2' -fucosyllactose, using engineered Escherichia coli

Lee, W. H., Pathanibul, P., Quarterman, J., Jo, J. H., Han, N. S., Miller, M. J., Jin, Y. S. & Seo, J. H. Apr 30 2012 (Accepted/In press) In : Microbial Cell Factories. p. 48 1 p.

Research output: Research - peer-reviewArticle

Biosynthesis
Oligosaccharides
Escherichia coli
2'-fucosyllactose
Fermentation
2011

Addition of polydextrose and galactooligosaccharide to formula does not affect bacterial translocation in the neonatal piglet

Monaco, M. H., Kashtanov, D. O., Wang, M., Walker, D. C., Rai, D., Jouni, Z. E., Miller, M. J. & Donovan, S. M. Feb 2011 In : Journal of Pediatric Gastroenterology and Nutrition. 52, 2, p. 210-216 7 p.

Research output: Research - peer-reviewArticle

polydextrose
Bacterial Translocation
Enteral Nutrition
Total Parenteral Nutrition
Lymph Nodes

Assessment of Lactobacillus gasseri as a candidate oral vaccine vector

Stoeker, L., Nordone, S., Gunderson, S., Zhang, L., Kajikawa, A., LaVoy, A., Miller, M., Klaenhammer, T. R. & Dean, G. A. Nov 2011 In : Clinical and Vaccine Immunology. 18, 11, p. 1834-1844 11 p.

Research output: Research - peer-reviewArticle

Flagellin
Chemical activation
Vaccines
Lactobacillus gasseri
Lactobacillus

Construction of vectors for inducible and constitutive gene expression in Lactobacillus

Duong, T., Miller, M. J., Barrangou, R., Azcarate-Peril, M. A. & Klaenhammer, T. R. May 2011 In : Microbial Biotechnology. 4, 3, p. 357-367 11 p.

Research output: Research - peer-reviewArticle

Lactobacillus acidophilus
Oxalates
Lactobacillus
Operon
Carbohydrates

Lactobacillus adhesion to mucus

van Tassell, M. L. & Miller, M. J. 2011 In : Nutrients. 3, 5, p. 613-636 24 p.

Research output: Research - peer-reviewReview article

mucus
Lactobacillus
adhesion
Mucus
probiotics
2010

Drivers of liking for yogurt drinks with prebiotics and probiotics

Allgeyer, L. C., Miller, M. J. & Lee, S. Y. May 2010 In : Journal of Food Science. 75, 4

Research output: Research - peer-reviewArticle

prebiotics
yogurt
probiotics
Prebiotics
Yogurt

Glucoraphanin hydrolysis by microbiota in the rat cecum results in sulforaphane absorption

Lai, R. H., Miller, M. J. & Jeffery, E. Nov 2010 In : Food and Function. 1, 2, p. 161-166 6 p.

Research output: Research - peer-reviewArticle

glucoraphanin
cecum
hydrolysis
rats
microbiome

Sensory and microbiological quality of yogurt drinks with prebiotics and probiotics

Allgeyer, L. C., Miller, M. J. & Lee, S. Y. Oct 2010 In : Journal of Dairy Science. 93, 10, p. 4471-4479 9 p.

Research output: Research - peer-reviewArticle

prebiotics
microbiological quality
yogurt
probiotics
Prebiotics

The PTS transporters of Lactobacillus gasseri ATCC 33323

Francl, A. L., Thongaram, T. & Miller, M. J. 2010 In : BMC Microbiology. 10, 77

Research output: Research - peer-reviewArticle

Phosphotransferases
Lactobacillus gasseri
Carbohydrates
Cellobiose
Lactobacillus
2008

Analysis of the genome sequence of Lactobacillus gasseri ATCC 33323 reveals the molecular basis of an autochthonous intestinal organism

Azcarate-Peril, M. A., Altermann, E., Yong, J. G., Tallon, R., Sanozky-Dawes, R. B., Pfeiler, E. A., O'Flaherty, S., Buck, B. L., Dobson, A., Duong, T., Miller, M. J., Barrangou, R. & Klaenhammer, T. R. Aug 2008 In : Applied and Environmental Microbiology. 74, 15, p. 4610-4625 16 p.

Research output: Research - peer-reviewArticle

Sequence Analysis
Genome
Lactobacillus gasseri
genome
analysis

Genome sequence and characteristics of Lrm1, a prophage from industrial Lactobacillus rhamnosus strain M1

Durmaz, E., Miller, M. J., Azcarate-Peril, M. A., Toon, S. P. & Klaenhammer, T. R. Aug 2008 In : Applied and Environmental Microbiology. 74, 15, p. 4601-4609 9 p.

Research output: Research - peer-reviewArticle

Lactobacillus rhamnosus
Prophages
Bacteriophages
Genome
bacteriophages
2005

Role of cis-acting sites NorL, a TATA box, and AflR1 in nor-1 transcriptiorial activation in Aspergillus parasiticus

Miller, M. J., Roze, L. V., Trail, F. & Linz, J. E. Mar 2005 In : Applied and Environmental Microbiology. 71, 3, p. 1539-1545 7 p.

Research output: Research - peer-reviewArticle

TATA Box
Aflatoxins
Aspergillus
TATA box
Aspergillus parasiticus
2004

A novel cAMP-response element, CRE1, modulates expression of nor-1 in Aspergillus parasiticus

Roze, L. V., Miller, M. J., Rarick, M., Mahanti, N. & Linz, J. E. Jun 25 2004 In : Journal of Biological Chemistry. 279, 26, p. 27428-27439 12 p.

Research output: Research - peer-reviewArticle

Response Elements
Aspergillus
Salts
Glucose
Peptones
2002

Chromosomal location plays a role in regulation of aflatoxin gene expression in Aspergillus parasiticus

Chiou, C. H., Miller, M., Wilson, D. L., Trail, F. & Linz, J. E. 2002 In : Applied and Environmental Microbiology. 68, 1, p. 306-315 10 p.

Research output: Research - peer-reviewArticle

Aspergillus parasiticus
beta-glucuronidase
aflatoxins
gene expression
Aflatoxins