If you made any changes in Pure these will be visible here soon.

Research Output

Filter
Article
2020

Evaluation of Combined Artificial Intelligence and Radiologist Assessment to Interpret Screening Mammograms

and the DM DREAM Consortium, Mar 2 2020, In : JAMA network open. 3, 3, p. e200265

Research output: Contribution to journalArticle

Open Access

Intratumoral heterogeneity and clonal evolution in liver cancer

Losic, B., Craig, A. J., Villacorta-Martin, C., Martins-Filho, S. N., Akers, N., Chen, X., Ahsen, M. E., Felden, J. V., Labgaa, I., DʹAvola, D., Allette, K., Lira, S. A., Furtado, G. C., Garcia-Lezana, T., Restrepo, P., Stueck, A., Ward, S. C., Fiel, M. I., Hiotis, S. P., Gunasekaran, G. & 8 others, Sia, D., Schadt, E. E., Sebra, R., Schwartz, M., Llovet, J. M., Thung, S., Stolovitzky, G. & Villanueva, A., Dec 2020, In : Nature communications.

Research output: Contribution to journalArticle

Radiogenomics Consortium Genome-Wide Association Study Meta-Analysis of Late Toxicity After Prostate Cancer Radiotherapy

Kerns, S. L., Fachal, L., Dorling, L., Barnett, G. C., Baran, A., Peterson, D. R., Hollenberg, M., Hao, K., Narzo, A. D., Ahsen, M. E., Pandey, G., Bentzen, S. M., Janelsins, M., Elliott, R. M., Pharoah, P. D. P., Burnet, N. G., Dearnaley, D. P., Gulliford, S. L., Hall, E., Sydes, M. R. & 20 others, Aguado-Barrera, M. E., Gómez-Caamaño, A., Carballo, A. M., Peleteiro, P., Lobato-Busto, R., Stock, R., Stone, N. N., Ostrer, H., Usmani, N., Singhal, S., Tsuji, H., Imai, T., Saito, S., Eeles, R., DeRuyck, K., Parliament, M., Dunning, A. M., Vega, A., Rosenstein, B. S. & West, C. M. L., Feb 1 2020, In : JNCI: Journal of the National Cancer Institute.

Research output: Contribution to journalArticle

2019

Assessment of network module identification across complex diseases

The DREAM Module Identification Challenge Consortium & Ahsen, M. E., Sep 1 2019, In : Nature Methods. 16, 9, p. 843-852 10 p.

Research output: Contribution to journalArticle

Open Access

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

AstraZeneca-Sanger Drug Combination DREAM Consortium, Dec 1 2019, In : Nature communications. 10, 1, 2674.

Research output: Contribution to journalArticle

Open Access

exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids

Murillo, O. D., Thistlethwaite, W., Rozowsky, J., Subramanian, S. L., Lucero, R., Shah, N., Jackson, A. R., Srinivasan, S., Chung, A., Laurent, C. D., Kitchen, R. R., Galeev, T., Warrell, J., Diao, J. A., Welsh, J. A., Hanspers, K., Riutta, A., Burgstaller-Muehlbacher, S., Shah, R. V., Yeri, A. & 38 others, Jenkins, L. M., Ahsen, M. E., Cordon-Cardo, C., Dogra, N., Gifford, S. M., Smith, J. T., Stolovitzky, G., Tewari, A. K., Wunsch, B. H., Yadav, K. K., Danielson, K. M., Filant, J., Moeller, C., Nejad, P., Paul, A., Simonson, B., Wong, D. K., Zhang, X., Balaj, L., Gandhi, R., Sood, A. K., Alexander, R. P., Wang, L., Wu, C., Wong, D. T. W., Galas, D. J., Van Keuren-Jensen, K., Patel, T., Jones, J. C., Das, S., Cheung, K. H., Pico, A. R., Su, A. I., Raffai, R. L., Laurent, L. C., Roth, M. E., Gerstein, M. B. & Milosavljevic, A., Apr 4 2019, In : Cell. 177, 2, p. 463-477.e15

Research output: Contribution to journalArticle

NeTFactor, a framework for identifying transcriptional regulators of gene expression-based biomarkers

Ahsen, M. E., Chun, Y., Grishin, A., Grishina, G., Stolovitzky, G., Pandey, G. & Bunyavanich, S., Dec 1 2019, In : Scientific reports. 9, 1, 12970.

Research output: Contribution to journalArticle

Open Access

Unsupervised Evaluation and Weighted Aggregation of Ranked Classification Predictions

Ahsen, M. E., Vogel, R. M. & Stolovitzky, G. A., 2019, In : Journal of Machine Learning Research. 20

Research output: Contribution to journalArticle

When algorithmic predictions use human-generated data: A bias-aware classification algorithm for breast cancer diagnosis

Ahsen, M. E., Ayvaci, M. U. S. & Raghunathan, S., Jan 1 2019, In : Information Systems Research. 30, 1, p. 97-116 20 p.

Research output: Contribution to journalArticle

2018

A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection

The Respiratory Viral DREAM Challenge Consortium & Ahsen, M. E., Dec 1 2018, In : Nature communications. 9, 1, 4418.

Research output: Contribution to journalArticle

Open Access

A Nasal Brush-based Classifier of Asthma Identified by Machine Learning Analysis of Nasal RNA Sequence Data

Pandey, G., Pandey, O. P., Rogers, A. J., Ahsen, M. E., Hoffman, G. E., Raby, B. A., Weiss, S. T., Schadt, E. E. & Bunyavanich, S., Dec 1 2018, In : Scientific Reports. 8, 1, 8826.

Research output: Contribution to journalArticle

Open Access

Inferring Genome-Wide Interaction Networks Using the Phi-Mixing Coefficient, and Applications to Lung and Breast Cancer

Singh, N., Ahsen, M. E., Challapalli, N., Kim, H. S., White, M. A. & Vidyasagar, M., Sep 2018, In : IEEE Transactions on Molecular, Biological, and Multi-Scale Communications. 4, 3, p. 123-139 17 p., 8789692.

Research output: Contribution to journalArticle

Integrated nanoscale deterministic lateral displacement arrays for separation of extracellular vesicles from clinically-relevant volumes of biological samples

Smith, J. T., Wunsch, B. H., Dogra, N., Ahsen, M. E., Lee, K., Yadav, K. K., Weil, R., Pereira, M. A., Patel, J. V., Duch, E. A., Papalia, J. M., Lofaro, M. F., Gupta, M., Tewari, A. K., Cordon-Cardo, C., Stolovitzky, G. & Gifford, S. M., Jan 1 2018, In : Lab on a Chip. 18, 24, p. 3913-3925 13 p.

Research output: Contribution to journalArticle

Preference-Sensitive Management of Post-Mammography Decisions in Breast Cancer Diagnosis

Ayvaci, M. U. S., Alagoz, O., Ahsen, M. E. & Burnside, E. S., Dec 2018, In : Production and Operations Management. 27, 12, p. 2313-2338 26 p.

Research output: Contribution to journalArticle

2017

Error bounds for compressed sensing algorithms with group sparsity: A unified approach

Ahsen, M. E. & Vidyasagar, M., Sep 2017, In : Applied and Computational Harmonic Analysis. 43, 2, p. 212-232 21 p.

Research output: Contribution to journalArticle

Open Access

Sparse feature selection for classification and prediction of metastasis in endometrial cancer

Ahsen, M. E., Boren, T. P., Singh, N. K., Misganaw, B., Mutch, D. G., Moore, K. N., Backes, F. J., McCourt, C. K., Lea, J. S., Miller, D. S., White, M. A. & Vidyasagar, M., Mar 27 2017, In : BMC genomics. 18, 233.

Research output: Contribution to journalArticle

Open Access

Timing the Use of Breast Cancer Risk Information in Biopsy Decision-Making

Ayvaci, M. U. S., Ahsen, M. E., Raghunathan, S. & Gharibi, Z., Jul 2017, In : Production and Operations Management. 26, 7, p. 1333-1358 26 p.

Research output: Contribution to journalArticle

Two new approaches to compressed sensing exhibiting both robust sparse recovery and the grouping effect

Ahsen, M. E., Challapalli, N. & Vidyasagar, M., Jul 1 2017, In : Journal of Machine Learning Research. 18

Research output: Contribution to journalArticle

2016

Analysis of a Gene Regulatory Network Model With Time Delay Using the Secant Condition

Ahsen, M. E., Ozbay, H. & Niculescu, S-I., Jun 2016, In : IEEE Life Sciences Letters.

Research output: Contribution to journalArticle

Estimating Waiting Time for Deceased Donor Renal Transplantion in the Era of New Kidney Allocation System

Torlak, F., Ayvaci, M. U. S., Ahsen, M. E., Arce, C., Vazquez, M. A. & Tanriover, B., Jul 1 2016, In : Transplantation Proceedings. 48, 6, p. 1916-1919 4 p.

Research output: Contribution to journalArticle

Optimized prediction of extreme treatment outcomes in ovarian cancer

Misganaw, B., Ahsen, E., Singh, N., Baggerly, K. A., Unruh, A., White, M. A. & Vidyasagar, M., Mar 21 2016, In : Cancer Informatics. 15, p. 45-55 11 p.

Research output: Contribution to journalArticle

Open Access
2014

Mixing coefficients between discrete and real random variables: Computation and properties

Ahsen, M. E. & Vidyasagar, M., Jan 2014, In : IEEE Transactions on Automatic Control. 59, 1, p. 34-47 14 p., 6595623.

Research output: Contribution to journalArticle

On the analysis of a dynamical model representing gene regulatory networks under negative feedback

Ahsen, M. E., Özbay, H. & Niculescu, S. I., Jul 25 2014, In : International Journal of Robust and Nonlinear Control. 24, 11, p. 1609-1627 19 p.

Research output: Contribution to journalArticle