Matthew Jon Yoder

20022018
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Research Output 2002 2018

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Article

A gross anatomy ontology for hymenoptera

Yoder, M. J., Mikó, I., Seltmann, K. C., Bertone, M. A. & Deans, A. R., Dec 1 2010, In : PloS one. 5, 12, e15991.

Research output: Contribution to journalArticle

Hymenoptera
Ontology
Anatomy
Biological Ontologies
genomics

A hymenopterists' guide to the Hymenoptera Anatomy Ontology: Utility, clarification, and future directions

Seltmann, K. C., Yoder, M. J., Mikó, I., Forshage, M., Bertone, M. A., Agosti, D., Austin, A. D., Balhoff, J. P., Borowiec, M. L., Brady, S. G., Broad, G. R., XBrothers, G. R., Burks, R. A., Buffington, M. L., Campbell, H. M., Dew, K. J., Ernst, A. F., Fernández-Triana, J. L., Gates, M. W., Gibson, G. A. P. & 18 others, Jennings, J. T., Johnson, N. F., Karlsson, D., Kawada, R., Krogmann, L., Kula, R. R., Mullins, P. L., Ohl, M., Rasmussen, C., Ronquist, F., Schulmeister, S., Sharkey, M. J., Talamas, E., Tucker, E., Vilhelmsen, L., Ward, P. S., Wharton, R. A. & Deans, A. R., Jul 9 2012, In : Journal of Hymenoptera Research. 27, 1, p. 67-88 22 p.

Research output: Contribution to journalArticle

anatomy
Hymenoptera
phenotype
resource
outreach

A monograph of the genus Westwoodia (Hymenoptera: Ichneumonidae)

Wharton, R. A., Roeder, K. & Yoder, M. J., Aug 22 2008, In : Zootaxa. 1855, p. 1-40 40 p.

Research output: Contribution to journalArticle

Ichneumonidae
Hymenoptera
Pergidae
new host records
neotypes

An evaluation of ensign wasp classification (Hymenoptera: Evaniidae) based on molecular data and insights from ribosomal RNA secondary structure

Deans, A. R., Gillespie, J. J. & Yoder, M. J., Jul 2006, In : Systematic Entomology. 31, 3, p. 517-528 12 p.

Research output: Contribution to journalArticle

Evaniidae
secondary structure
wasp
Hymenoptera
ribosomal RNA

A phylogenetic analysis of the megadiverse Chalcidoidea (Hymenoptera)

Heraty, J. M., Burks, R. A., Cruaud, A., Gibson, G. A. P., Liljeblad, J., Munro, J., Rasplus, J. Y., Delvare, G., Janšta, P., Gumovsky, A., Huber, J., Woolley, J. B., Krogmann, L., Heydon, S., Polaszek, A., Schmidt, S., Darling, D. C., Gates, M. W., Mottern, J., Murray, E. & 7 others, Dal Molin, A., Triapitsyn, S., Baur, H., Pinto, J. D., van Noort, S., George, J. & Yoder, M., Oct 1 2013, In : Cladistics. 29, 5, p. 466-542 77 p.

Research output: Contribution to journalArticle

Pteromalidae
Hymenoptera
Eupelmidae
phylogenetics
Aphelinidae

A secondary structural model of the 28S rRNA expansion segments D2 and D3 for chalcidoid wasps (Hymenoptera: Chalcidoidea)

Gillespie, J. J., Munro, J. B., Heraty, J. M., Yoder, M. J., Owen, A. K. & Carmichael, A. E., Jul 1 2005, In : Molecular biology and evolution. 22, 7, p. 1593-1608 16 p.

Research output: Contribution to journalArticle

Wasps
Hymenoptera
Structural Models
wasp
Base Pairing

A semantic model for species description applied to the ensign wasps (Hymenoptera: Evaniidae) of new caledonia

Balhoff, J. P., Mikó, I., Yoder, M. J., Mullins, P. L. & Deans, A. R., Sep 1 2013, In : Systematic biology. 62, 5, p. 639-659 21 p.

Research output: Contribution to journalArticle

Szepligetella
Evaniidae
New Caledonia
Wasps
Hymenoptera

Assessing the odd secondary structural properties of nuclear small subunit ribosomal RNA sequences (18S) of the twisted-wing parasites (Insecta: Strepsiptera)

Gillespie, J. J., McKenna, C. H., Yoder, M. J., Gutell, R. R., Johnston, J. S., Kathirithamby, J. & Cognato, A. I., Dec 1 2005, In : Insect Molecular Biology. 14, 6, p. 625-643 19 p.

Research output: Contribution to journalArticle

Strepsiptera
Small Ribosome Subunits
Arthropods
Insecta
Base Pairing

Finding Our Way through Phenotypes

Deans, A. R., Lewis, S. E., Huala, E., Anzaldo, S. S., Ashburner, M., Balhoff, J. P., Blackburn, D. C., Blake, J. A., Burleigh, J. G., Chanet, B., Cooper, L. D., Courtot, M., Csösz, S., Cui, H., Dahdul, W., Das, S., Dececchi, T. A., Dettai, A., Diogo, R., Druzinsky, R. E. & 54 others, Dumontier, M., Franz, N. M., Friedrich, F., Gkoutos, G. V., Haendel, M., Harmon, L. J., Hayamizu, T. F., He, Y., Hines, H. M., Ibrahim, N., Jackson, L. M., Jaiswal, P., James-Zorn, C., Köhler, S., Lecointre, G., Lapp, H., Lawrence, C. J., Le Novère, N., Lundberg, J. G., Macklin, J., Mast, A. R., Midford, P. E., Mikó, I., Mungall, C. J., Oellrich, A., Osumi-Sutherland, D., Parkinson, H., Ramírez, M. J., Richter, S., Robinson, P. N., Ruttenberg, A., Schulz, K. S., Segerdell, E., Seltmann, K. C., Sharkey, M. J., Smith, A. D., Smith, B., Specht, C. D., Squires, R. B., Thacker, R. W., Thessen, A., Fernandez-Triana, J., Vihinen, M., Vize, P. D., Vogt, L., Wall, C. E., Walls, R. L., Westerfeld, M., Wharton, R. A., Wirkner, C. S., Woolley, J. B., Yoder, M. J., Zorn, A. M. & Mabee, P., Jan 1 2015, In : PLoS biology. 13, 1

Research output: Contribution to journalArticle

Data description
Phenotype
phenotype
Biological Sciences
Ecology

Identity and synonymy of Dicroscelio Kieffer and description of Axea, a new genus from tropical Africa and Asia (Hymenoptera: Platygastroidea: Platygastridae)

Yoder, M. J., Valerio, A. A., Masner, L. & Johnson, N. F., Feb 5 2009, In : Zootaxa. 2003, p. 1-45 45 p.

Research output: Contribution to journalArticle

Platygasteridae
Afrotropical Region
Oriental Region
combs (social insects)
new genus

Malagasy Conostigmus (Hymenoptera: Ceraphronoidea) and the secret of scutes

Mikó, I., Trietsch, C., Sandall, E. L., Yoder, M. J., Hines, H. & Deans, A. R., Jan 1 2016, In : PeerJ. 2016, 12, 2682.

Research output: Contribution to journalArticle

Hymenoptera
Formal languages
Leather
Body Size
Terminology

Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: Results from a manual alignment

Bertone, M. A., Mikó, I., Yoder, M. J., Seltmann, K. C., Balhoff, J. P. & Deans, A. R., Dec 1 2013, In : Database. 2013, bas057.

Research output: Contribution to journalArticle

Hymenoptera
Arthropods
Ontology
arthropods
Anatomy

Monograph of the afrotropical species of Scelio Latreille (hymenoptera, platygastridae), egg parasitoids of acridid grasshoppers (Orthoptera, Acrididae)

Yoder, M. J., Valerio, A. A., Polaszek, A., van Noort, S., Masner, L. & Johnson, N. F., Feb 25 2014, In : ZooKeys. 380, SPEC. ISSUE, p. 1-188 188 p.

Research output: Contribution to journalArticle

Scelio
Platygasteridae
Acrididae
grasshopper
grasshoppers
metazoan
Phylogeny
rRNA Genes
phylogeny
ribosomal RNA

Nearly complete rRNA genes from 371 Animalia: Updated structure-based alignment and detailed phylogenetic analysis

Mallatt, J., Craig, C. W. & Yoder, M. J., Sep 1 2012, In : Molecular Phylogenetics and Evolution. 64, 3, p. 603-617 15 p.

Research output: Contribution to journalArticle

Animalia
rRNA Genes
Cephalopoda
ribosomal RNA
phylogenetics
Diapriidae
Ceratitis capitata
Tephritidae
new status
Hymenoptera

On dorsal prothoracic appendages in treehoppers (Hemiptera: Membracidae) and the nature of morphological evidence

Mikó, I., Friedrich, F., Yoder, M. J., Hines, H. M., Deitz, L. L., Bertone, M. A., Seltmann, K. C., Wallace, M. S. & Deans, A. R., Jan 17 2012, In : PloS one. 7, 1, e30137.

Research output: Contribution to journalArticle

Membracidae
Head Protective Devices
Hemiptera
chest
appendages
Benchmarking
Hymenoptera
secondary structure
Sequence Alignment
sequence alignment

Relationships of Exodontiella, a non-alysiine, exodont member of the family Braconidae (Insecta, Hymenoptera)

Wharton, R. A., Yoder, M. J., Gillespie, J. J., Patton, J. C. & Honeycutt, R. L., Jul 1 2006, In : Zoologica Scripta. 35, 4, p. 323-340 18 p.

Research output: Contribution to journalArticle

Hymenoptera
Braconidae
Insecta
rRNA Genes
Insects

Revision of Scelio pulchripennis - group species (Hymenoptera, Platygastroidea, Platygastridae)

Yoder, M. J., Valerio, A. A., Polaszek, A., Masner, L. & Johnson, N. F., Dec 1 2009, In : ZooKeys. 20, SPEC. ISSUE 2, p. 53-118 66 p.

Research output: Contribution to journalArticle

Scelio
Platygasteridae
Botswana
Hymenoptera
South Africa

Revision of the North American species of the genus Entomacis (Hymenoptera: Diapriidae)

Yoder, M. J., Jan 1 2004, In : Canadian Entomologist. 136, 3, p. 323-405 83 p.

Research output: Contribution to journalArticle

Diapriidae
Hymenoptera
North America
Mexico
new species

The first organ-based ontology for arthropods (Ontology of Arthropod Circulatory Systems - OArCS) and its integration into a novel formalization scheme for morphological descriptions

Wirkner, C. S., Göpel, T., Runge, J., Keiler, J., Klussmann-Fricke, B. J., Huckstorf, K., Scholz, S., Mikó, I., Yoder, M. J. & Richter, S., Sep 1 2017, In : Systematic biology. 66, 5, p. 754-768 15 p.

Research output: Contribution to journalArticle

Systems Integration
cardiovascular system
circulatory system
Arthropods
Cardiovascular System

Utilizing Descriptive Statements from the Biodiversity Heritage Library to Expand the Hymenoptera Anatomy Ontology

Seltmann, K. C., Pénzes, Z., Yoder, M. J., Bertone, M. A. & Deans, A. R., Feb 18 2013, In : PloS one. 8, 2, e55674.

Research output: Contribution to journalArticle

Hymenoptera
Biodiversity
Libraries
Ontology
Anatomy

Wet collections accession: a workflow based on a large stonefly (Insecta, Plecoptera) donation.

DeWalt, R. E., Yoder, M., Snyder, E. A., Dmitriev, D. & Ower, G. D., 2018, In : Biodiversity Data Journal. 6, p. e30256-e30256

Research output: Contribution to journalArticle

stonefly
Plecoptera
Insecta
researchers
natural history