Martin H W Gruebele

If you made any changes in Pure these will be visible here soon.

Research Output

2020

An in-silico human cell model reveals the influence of spatial organization on RNA splicing

Ghaemi, Z., Peterson, J. R., Gruebele, M. & Luthey-Schulten, Z., Mar 25 2020, In : PLoS computational biology. 16, 3, e1007717.

Research output: Contribution to journalArticle

Open Access

An in vitro mimic of in-cell solvation for protein folding studies

Davis, C. M., Deutsch, J. & Gruebele, M., Jan 1 2020, (Accepted/In press) In : Protein Science.

Research output: Contribution to journalArticle

Chaperones Hsc70 and Hsp70 Bind to the Protein PGK Differently inside Living Cells

Guin, D. & Gruebele, M., May 7 2020, In : Journal of Physical Chemistry B. 124, 18, p. 3629-3635 7 p.

Research output: Contribution to journalArticle

Excited-state imaging of single particles on the subnanometer scale

Wallum, A., Nguyen, H. A. & Gruebele, M., Apr 20 2020, In : Annual Review of Physical Chemistry. 71, p. 415-433 19 p.

Research output: Contribution to journalReview article

Open Access
2019

Blue light is a universal signal for Escherichia coli chemoreceptors

Perlova, T., Gruebele, M. & Chemla, Y. R., Jan 1 2019, In : Journal of bacteriology. 201, 11, e0076218.

Research output: Contribution to journalArticle

Competition of individual domain folding with inter-domain interaction in WW domain engineered repeat proteins

Dave, K., Gasic, A. G., Cheung, M. S. & Gruebele, M., Jan 1 2019, In : Physical Chemistry Chemical Physics. 21, 44, p. 24393-24405 13 p.

Research output: Contribution to journalArticle

Critical Phenomena in the Temperature-Pressure-Crowding Phase Diagram of a Protein

Gasic, A. G., Boob, M. M., Prigozhin, M. B., Homouz, D., Daugherty, C. M., Gruebele, M. & Cheung, M. S., Nov 18 2019, In : Physical Review X. 9, 4, 041035.

Research output: Contribution to journalArticle

Open Access

Dodine as a Kosmo-Chaotropic Agent

Guin, D., Mittal, S., Bozymski, B., Shukla, D. & Gruebele, M., May 16 2019, In : Journal of Physical Chemistry Letters. 10, 10, p. 2600-2605 6 p.

Research output: Contribution to journalArticle

Heat shock-induced chaperoning by Hsp70 is enabled in-cell

Guin, D., Gelman, H., Wang, Y. & Gruebele, M., Jan 1 2019, In : PloS one. 14, 9, e0222990.

Research output: Contribution to journalArticle

Open Access

Imaging of Carbon Nanotube Electronic States Polarized by the Field of an Excited Quantum Dot

Nguyen, D., Wallum, A., Nguyen, H. A., Nguyen, N. T., Lyding, J. W. & Gruebele, M., Feb 26 2019, In : ACS Nano. 13, 2, p. 1012-1018 7 p.

Research output: Contribution to journalArticle

In-Cell Protein-Protein Contacts: Transient Interactions in the Crowd

Rickard, M. M., Zhang, Y., Gruebele, M. & Pogorelov, T. V., Sep 19 2019, In : Journal of Physical Chemistry Letters. 10, 18, p. 5667-5673 7 p.

Research output: Contribution to journalArticle

Multi-scale dynamics at the glassy silica surface

Nguyen, H. A., Liao, C., Wallum, A., Lyding, J. & Gruebele, M., Nov 7 2019, In : Journal of Chemical Physics. 151, 17, 174502.

Research output: Contribution to journalArticle

Phase separation of YAP reorganizes genome topology for long-term YAP target gene expression

Cai, D., Feliciano, D., Dong, P., Flores, E., Gruebele, M., Porat-Shliom, N., Sukenik, S., Liu, Z. & Lippincott-Schwartz, J., Dec 1 2019, In : Nature Cell Biology. 21, 12, p. 1578-1589 12 p.

Research output: Contribution to journalArticle

Polymeric "clickase" Accelerates the Copper Click Reaction of Small Molecules, Proteins, and Cells

Chen, J., Wang, J., Li, K., Wang, Y., Gruebele, M., Ferguson, A. L. & Zimmerman, S. C., Jun 19 2019, In : Journal of the American Chemical Society. 141, 24, p. 9693-9700 8 p.

Research output: Contribution to journalArticle

Proteins: "boil 'Em, Mash 'Em, Stick 'Em in a Stew"

Boob, M., Wang, Y. & Gruebele, M., Oct 10 2019, In : Journal of Physical Chemistry B. 123, 40, p. 8341-8350 10 p.

Research output: Contribution to journalArticle

Quantifying protein dynamics and stability in a living organism

Feng, R., Gruebele, M. & Davis, C. M., Dec 1 2019, In : Nature communications. 10, 1, 1179.

Research output: Contribution to journalArticle

Open Access

Weak Chemical Interactions That Drive Protein Evolution: Crowding, Sticking, and Quinary Structure in Folding and Function

Guin, D. & Gruebele, M., Jan 1 2019, In : Chemical reviews. 119, 18, p. 10691-10717 27 p.

Research output: Contribution to journalArticle

2018

A quantitative connection of experimental and simulated folding landscapes by vibrational spectroscopy

Davis, C. M., Zanetti-Polzi, L., Gruebele, M., Amadei, A., Dyer, R. B. & Daidone, I., Jan 1 2018, In : Chemical Science. 9, 48, p. 9002-9011 10 p.

Research output: Contribution to journalArticle

Cell Volume Controls Protein Stability and Compactness of the Unfolded State

Wang, Y., Sukenik, S., Davis, C. M. & Gruebele, M., Dec 13 2018, In : Journal of Physical Chemistry B. 122, 49, p. 11762-11770 9 p.

Research output: Contribution to journalArticle

How does solvation in the cell affect protein folding and binding?

Davis, C. M., Gruebele, M. & Sukenik, S., Feb 2018, In : Current Opinion in Structural Biology. 48, p. 23-29 7 p.

Research output: Contribution to journalReview article

In-Cell Titration of Small Solutes Controls Protein Stability and Aggregation

Sukenik, S., Salam, M., Wang, Y. & Gruebele, M., Aug 22 2018, In : Journal of the American Chemical Society. 140, 33, p. 10497-10503 7 p.

Research output: Contribution to journalArticle

Labeling for Quantitative Comparison of Imaging Measurements in Vitro and in Cells

Davis, C. M. & Gruebele, M., Apr 3 2018, In : Biochemistry. 57, 13, p. 1929-1938 10 p.

Research output: Contribution to journalReview article

Non-Steric Interactions Predict the Trend and Steric Interactions the Offset of Protein Stability in Cells

Davis, C. M. & Gruebele, M., Sep 18 2018, In : ChemPhysChem. 19, 18, p. 2290-2294 5 p.

Research output: Contribution to journalArticle

Optical Control of Metal Ion Probes in Cells and Zebrafish Using Highly Selective DNAzymes Conjugated to Upconversion Nanoparticles

Yang, Z., Loh, K. Y., Chu, Y. T., Feng, R., Satyavolu, N. S. R., Xiong, M., Nakamata Huynh, S. M., Hwang, K., Li, L., Xing, H., Zhang, X., Chemla, Y. R., Gruebele, M. & Lu, Y., Dec 19 2018, In : Journal of the American Chemical Society. 140, 50, p. 17656-17665 10 p.

Research output: Contribution to journalArticle

Orientation-dependent imaging of electronically excited quantum dots

Nguyen, D., Goings, J. J., Nguyen, H. A., Lyding, J., Li, X. & Gruebele, M., Feb 14 2018, In : Journal of Chemical Physics. 148, 6, 064701.

Research output: Contribution to journalArticle

Pressure- and heat-induced protein unfolding in bacterial cells: crowding vs. sticking

Chen, T., Dave, K. & Gruebele, M., Apr 2018, In : FEBS Letters. 592, 8, p. 1357-1365 9 p.

Research output: Contribution to journalLetter

Soluble Zwitterionic Poly(sulfobetaine) Destabilizes Proteins

Kisley, L., Serrano, K. A., Davis, C. M., Guin, D., Murphy, E. A., Gruebele, M. & Leckband, D. E., Sep 10 2018, In : Biomacromolecules. 19, 9, p. 3894-3901 8 p.

Research output: Contribution to journalArticle

STM Imaging of Localized Surface Plasmons on Individual Gold Nanoislands

Nguyen, H. A., Banerjee, P., Nguyen, D., Lyding, J. W., Gruebele, M. & Jain, P. K., Apr 19 2018, In : Journal of Physical Chemistry Letters. 9, 8, p. 1970-1976 7 p.

Research output: Contribution to journalArticle

2017

Au(111)-supported Platinum Nanoparticles: Ripening and Activity

Wieghold, S., Nienhaus, L., Siebel, A., Krause, M., Wand, P., Gruebele, M., Heiz, U. & Esch, F., Jan 1 2017, In : MRS Advances. 2, 8, p. 439-444 6 p.

Research output: Contribution to journalArticle

Direct Imaging of Protein Stability and Folding Kinetics in Hydrogels

Kisley, L., Serrano, K. A., Guin, D., Kong, X., Gruebele, M. & Leckband, D. E., Jul 5 2017, In : ACS Applied Materials and Interfaces. 9, 26, p. 21606-21617 12 p.

Research output: Contribution to journalArticle

Eliminating a Protein Folding Intermediate by Tuning a Local Hydrophobic Contact

Kachlishvili, K., Dave, K., Gruebele, M., Scheraga, H. A. & Maisuradze, G. G., Apr 20 2017, In : Journal of Physical Chemistry B. 121, 15, p. 3276-3284 9 p.

Research output: Contribution to journalArticle

Imaging and Manipulating Energy Transfer among Quantum Dots at Individual Dot Resolution

Nguyen, D., Nguyen, H. A., Lyding, J. W. & Gruebele, M., Jun 27 2017, In : ACS Nano. 11, 6, p. 6328-6335 8 p.

Research output: Contribution to journalArticle

Parallel folding pathways of Fip35 WW domain explained by infrared spectra and their computer simulation

Zanetti-Polzi, L., Davis, C. M., Gruebele, M., Dyer, R. B., Amadei, A. & Daidone, I., Oct 2017, In : FEBS Letters. 591, 20, p. 3265-3275 11 p.

Research output: Contribution to journalLetter

Plasmonic support-mediated activation of 1 nm platinum clusters for catalysis

Wieghold, S., Nienhaus, L., Knoller, F. L., Schweinberger, F. F., Shepherd, J. J., Lyding, J. W., Heiz, U., Gruebele, M. & Esch, F., Jan 1 2017, In : Physical Chemistry Chemical Physics. 19, 45, p. 30570-30577 8 p.

Research output: Contribution to journalArticle

Quantum controlled fusion

Berrios, E., Gruebele, M. & Wolynes, P. G., Sep 1 2017, In : Chemical Physics Letters. 683, p. 216-221 6 p.

Research output: Contribution to journalArticle

Role of Electrostatics in Protein-RNA Binding: The Global vs the Local Energy Landscape

Ghaemi, Z., Guzman, I., Gnutt, D., Luthey-Schulten, Z. & Gruebele, M., Sep 14 2017, In : Journal of Physical Chemistry B. 121, 36, p. 8437-8446 10 p.

Research output: Contribution to journalArticle

The Surface of Protein λ6-85 Can Act as a Template for Recurring Poly(ethylene glycol) Structure

Chao, S. H., Schäfer, J. & Gruebele, M., Oct 24 2017, In : Biochemistry. 56, 42, p. 5671-5678 8 p.

Research output: Contribution to journalArticle

Weak protein-protein interactions in live cells are quantified by cell-volume modulation

Sukenik, S., Ren, P. & Gruebele, M., Jun 27 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 26, p. 6776-6781 6 p.

Research output: Contribution to journalArticle

2016

Can Local Probes Go Global? A Joint Experiment-Simulation Analysis of λ6-85 Folding

Sukenik, S., Pogorelov, T. V. & Gruebele, M., Jun 2 2016, In : Journal of Physical Chemistry Letters. 7, 11, p. 1960-1965 6 p.

Research output: Contribution to journalArticle

Composition-dependent metallic glass alloys correlate atomic mobility with collective glass surface dynamics

Nguyen, D., Zhu, Z. G., Pringle, B., Lyding, J., Wang, W. H. & Gruebele, M., Jan 1 2016, In : Physical Chemistry Chemical Physics. 18, 25, p. 16856-16861 6 p.

Research output: Contribution to journalArticle

Disulfide bridges: Bringing together frustrated structure in a bioactive peptide

Zhang, Y., Schulten, K., Gruebele, M., Bansal, P. S., Wilson, D. & Daly, N. L., Apr 26 2016, In : Biophysical journal. 110, 8, p. 1744-1752 9 p.

Research output: Contribution to journalArticle

Dodine as a transparent protein denaturant for circular dichroism and infrared studies

Guin, D., Sye, K., Dave, K. & Gruebele, M., May 1 2016, In : Protein Science. 25, 5, p. 1061-1068 8 p.

Research output: Contribution to journalArticle

Environmental Fluctuations and Stochastic Resonance in Protein Folding

Dave, K., Davtyan, A., Papoian, G. A., Gruebele, M. & Platkov, M., May 4 2016, In : ChemPhysChem. 17, 9, p. 1341-1348 8 p.

Research output: Contribution to journalArticle

Estimation of Relative Protein-RNA Binding Strengths from Fluctuations in the Bound State

Ghaemi, Z., Guzman, I., Baek, J. U. J., Gruebele, M. & Luthey-Schulten, Z., Sep 13 2016, In : Journal of Chemical Theory and Computation. 12, 9, p. 4593-4599 7 p.

Research output: Contribution to journalArticle

Globular Protein Folding In Vitro and In Vivo

Gruebele, M., Dave, K. & Sukenik, S., Jul 5 2016, In : Annual Review of Biophysics. 45, p. 233-251 19 p.

Research output: Contribution to journalArticle

High-resolution mapping of the folding transition state of a WW domain

Dave, K., Jäger, M., Nguyen, H., Kelly, J. W. & Gruebele, M., Apr 24 2016, In : Journal of Molecular Biology. 428, 8, p. 1617-1636 20 p.

Research output: Contribution to journalArticle

Mechanical approach to chemical transport

Kocherginsky, N. & Gruebele, M., Oct 4 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 40, p. 11116-11121 6 p.

Research output: Contribution to journalArticle

ReAsH as a Quantitative Probe of In-Cell Protein Dynamics

Gelman, H., Wirth, A. J. & Gruebele, M., Apr 19 2016, In : Biochemistry. 55, 13, p. 1968-1976 9 p.

Research output: Contribution to journalArticle

Role of pressure in the growth of hexagonal boron nitride thin films from ammonia-borane

Koepke, J. C., Wood, J. D., Chen, Y., Schmucker, S. W., Liu, X., Chang, N. N., Nienhaus, L., Do, J. W., Carrion, E. A., Hewaparakrama, J., Rangarajan, A., Datye, I., Mehta, R., Haasch, R. T., Gruebele, M., Girolami, G. S., Pop, E. & Lyding, J. W., May 22 2016, In : Chemistry of Materials. 28, 12, p. 4169-4179 11 p.

Research output: Contribution to journalArticle