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Research Output

2020

A partial-dithering strategy for edge-illumination X-ray phase-contrast tomography enabled by a joint reconstruction method

Chen, Y., Hagen, C. K., Olivo, A. & Anastasio, M. A., May 21 2020, In : Physics in medicine and biology. 65, 10, 105007.

Research output: Contribution to journalArticle

A preclinical small animal imaging platform combining multi-angle photoacoustic and fluorescence projections into co-registered 3D maps

Thompson, W., Yu, A., Dumani, D. S., Cook, J., Anastasio, M. A., Emelianov, S. Y. & Ermilov, S. A., 2020, Photons Plus Ultrasound: Imaging and Sensing 2020. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, 112400L. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11240).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Comparison of data-acquisition designs for single-shot edge-illumination X-ray phase-contrast tomography

Chen, Y., Zhou, W., Hagen, C. K., Olivo, A. & Anastasio, M. A., 2020, In : Optics Express. 28, 1, p. 1-19 19 p.

Research output: Contribution to journalArticle

Iterative image reconstruction in transcranial photoacoustic tomography based on the elastic wave equation

Poudel, J., Na, S., Wang, L. V. & Anastasio, M. A., 2020, In : Physics in medicine and biology. 65, 5, 055009.

Research output: Contribution to journalArticle

Open Access

Learning efficient channels with a dual loss autoencoder

Granstedt, J. L., Zhou, W. & Anastasio, M. A., Jan 1 2020, Medical Imaging 2020: Image Perception, Observer Performance, and Technology Assessment. Samuelson, F. W. & Taylor-Phillips, S. (eds.). SPIE, 113160C. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11316).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Learning numerical observers using unsupervised domain adaptation

He, S., Zhou, W., Li, H. & Anastasio, M. A., Jan 1 2020, Medical Imaging 2020: Image Perception, Observer Performance, and Technology Assessment. Samuelson, F. W. & Taylor-Phillips, S. (eds.). SPIE, 113160W. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11316).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Markov-Chain Monte Carlo approximation of the Ideal Observer using generative adversarial networks

Zhou, W. & Anastasio, M. A., Jan 1 2020, Medical Imaging 2020: Image Perception, Observer Performance, and Technology Assessment. Samuelson, F. W. & Taylor-Phillips, S. (eds.). SPIE, 113160D. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11316).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Medical image reconstruction with image-adaptive priors learned by use of generative adversarial networks

Bhadra, S., Zhou, W. & Anastasio, M. A., 2020, Medical Imaging 2020: Physics of Medical Imaging. Chen, G-H. & Bosmans, H. (eds.). SPIE, 113120V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11312).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optimal breast cancer diagnostic strategy using combined ultrasound and diffuse optical tomography

Shihab Uddin, K. M., Zhang, M., Anastasio, M. & Zhu, Q., May 1 2020, In : Biomedical Optics Express. 11, 5, p. 2722-2737 16 p.

Research output: Contribution to journalArticle

Photoacoustic Imaging in Tissue Engineering and Regenerative Medicine

Shrestha, B., Deluna, F., Anastasio, M. A., Yong Ye, J. & Brey, E. M., Feb 2020, In : Tissue Engineering - Part B: Reviews. 26, 1, p. 79-102 24 p.

Research output: Contribution to journalReview article

Open Access

Progressively-Growing AmbientGANs for learning stochastic object models from imaging measurements

Zhou, W., Bhadra, S., Brooks, F. J., Li, H. & Anastasio, M. A., Jan 1 2020, Medical Imaging 2020: Image Perception, Observer Performance, and Technology Assessment. Samuelson, F. W. & Taylor-Phillips, S. (eds.). SPIE, 113160Q. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11316).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

X-ray CT in Phase Contrast Enhancement Geometry of Alginate Microbeads in a Whole-Animal Model

Brown, J., Somo, S., Brooks, F., Komarov, S., Zhou, W., Anastasio, M. & Brey, E., Mar 1 2020, In : Annals of Biomedical Engineering. 48, 3, p. 1016-1024 9 p.

Research output: Contribution to journalArticle

2019

All-reflective ring illumination system for photoacoustic tomography

Alshahrani, S. S., Yan, Y., Alijabbari, N., Pattyn, A., Avrutsky, I., Malyarenko, E., Poudel, J., Anastasio, M. & Mehrmohammadi, M., Apr 1 2019, In : Journal of biomedical optics. 24, 4, 046004.

Research output: Contribution to journalArticle

Open Access

Approximating the Ideal Observer and Hotelling Observer for Binary Signal Detection Tasks by Use of Supervised Learning Methods

Zhou, W., Li, H. & Anastasio, M. A., Oct 2019, In : IEEE transactions on medical imaging. 38, 10, p. 2456-2468 13 p., 8691467.

Research output: Contribution to journalArticle

Open Access

Autoencoder embedding of task-specific information

Granstedt, J., Zhou, W. & Anastasio, M. A., Mar 4 2019, p. 6.

Research output: Contribution to conferencePaper

Automatic microscopic cell counting by use of deeply-supervised density regression model

He, S., Minn, K. T., Solnica-krezel, L., Anastasio, M. & Li, H., Mar 18 2019, p. 19.

Research output: Contribution to conferencePaper

Automatic microscopic cell counting by use of unsupervised adversarial domain adaptation and supervised density regression

He, S., Minn, K. T., Solnica-krezel, L., Li, H. & Anastasio, M., Mar 18 2019, p. 2.

Research output: Contribution to conferencePaper

Compensation for non-uniform illumination and optical fluence attenuation in three-dimensional optoacoustic tomography of the breast

Park, S., Oraevsky, A. A., Su, R. & Anastasio, M. A., Mar 8 2019, p. 180.

Research output: Contribution to conferencePaper

Joint-reconstruction-enabled partial-dithering strategy for edge-illumination x-ray phase-contrast tomography

Chen, Y. & Anastasio, M. A., Mar 1 2019, p. 60.

Research output: Contribution to conferencePaper

Learning stochastic object model from noisy imaging measurements using AmbientGANs

Zhou, W., Bhadra, S., Brooks, F. & Anastasio, M. A., Mar 4 2019, p. 21.

Research output: Contribution to conferencePaper

Learning the Hotelling observer for SKE detection tasks by use of supervised learning methods

Zhou, W., Li, H. & Anastasio, M. A., Mar 4 2019, p. 7.

Research output: Contribution to conferencePaper

Preclinical small animal imaging platform providing co-registered 3D maps of photoacoustic response and fluorescence

Dumani, D. S., Yu, A., Thompson, W., Brecht, H., Ivanov, V., Anastasio, M. A., Cook, J. R., Ermilov, S. A. & Emelianov, S. Y., Mar 19 2019, p. 181.

Research output: Contribution to conferencePaper

Quantification of image texture in X-ray phase-contrast-enhanced projection images of in vivo mouse lungs observed at varied inflation pressures

Brooks, F. J., Gunsten, S. P., Vasireddi, S. K., Brody, S. L. & Anastasio, M. A., 2019, In : Physiological Reports. 7, 16, e14208.

Research output: Contribution to journalArticle

Open Access

Special Section Guest Editorial: Celebrating the Exponential Growth of Optoacoustic/Photoacoustic Imaging

Beard, P., Anastasio, M., Oraevsky, A. A. & Wang, L. V., Dec 1 2019, In : Journal of biomedical optics. 24, 12, 121901.

Research output: Contribution to journalEditorial

Open Access

Task-based image quality assessment in radiation therapy: Initial characterization and demonstration with computer-simulation study

Dolly, S. R., Lou, Y., Anastasio, M. A. & Li, H., Jul 18 2019, In : Physics in medicine and biology. 64, 14, 145020.

Research output: Contribution to journalArticle

X-ray phase contrast imaging of soft biomaterials in a whole-animal model

Brown, J., Somo, S., Brooks, F., Komarov, S., Zhou, W., Anastasio, M. & Brey, E., 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

A 3D imaging system integrating photoacoustic and fluorescence orthogonal projections for anatomical, functional and molecular assessment of rodent models

Brecht, H. P., Ivanov, V., Dumani, DI. S., Emelianov, S. Y., Anastasio, M. A. & Ermilov, S. A., Jan 1 2018, Photons Plus Ultrasound: Imaging and Sensing 2018. Wang, L. V. & Oraevsky, A. A. (eds.). SPIE, 1049411. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10494).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Active learning with noise modeling for medical image annotation

Wu, J., Ruan, S., Lian, C., Mutic, S., Anastasio, M. A. & Li, H., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 298-301 4 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A deep Boltzmann machine-driven level set method for heart motion tracking using cine MRI images

Wu, J., Mazur, T. R., Ruan, S., Lian, C., Daniel, N., Lashmett, H., Ochoa, L., Zoberi, I., Anastasio, M. A., Gach, H. M., Mutic, S., Thomas, M. & Li, H., Jul 2018, In : Medical Image Analysis. 47, p. 68-80 13 p.

Research output: Contribution to journalArticle

A diffuse optical tomography system for whole-brain functional imaging in mice using multiple camera views

Markow, Z. E., Reisman, M. D., Bauer, A. Q., Eggebrecht, A. T., Anastasio, M. A. & Culver, J. P., Jan 1 2018, Optical Tomography and Spectroscopy, OTS 2018. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F90-OTS 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

An advanced photoacoustic tomography system based on a ring geometry design

Alshahrani, S., Yan, Y., Avrutsky, I., Malyarenko, E., Anastasio, M. & Mehrmohammadi, M., Jan 1 2018, Medical Imaging 2018: Ultrasonic Imaging and Tomography. Duric, N. & Byram, B. C. (eds.). SPIE, 1058005. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10580).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Convolutional neural network based automatic plaque characterization for intracoronary optical coherence tomography images

He, S., Zheng, J., Maehara, A., Mintz, G., Tang, D., Anastasio, M. & Li, H., Jan 1 2018, Medical Imaging 2018: Image Processing. Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 1057432. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10574).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

First point-spread function and x-ray phase-contrast imaging results with an 88-mm diameter single crystal

Lumpkin, A. H., Garson, A. B. & Anastasio, M. A., Jul 1 2018, In : Review of Scientific Instruments. 89, 7, 073704.

Research output: Contribution to journalArticle

Full-view 3D imaging system for functional and anatomical screening of the breast

Oraevsky, A., Su, R., Nguyen, H., Moore, J., Lou, Y., Bhadra, S., Forte, L., Anastasio, M. & Yang, W., Jan 1 2018, Photons Plus Ultrasound: Imaging and Sensing 2018. Wang, L. V. & Oraevsky, A. A. (eds.). SPIE, 104942Y. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10494).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Heart motion tracking on cine MRI based on a deep Boltzmann machine-driven level set method

Wu, J., Ruan, S., Mazur, T. R., Daniel, N., Lashmett, H., Ochoa, L., Zoberi, I., Lian, C., Gach, H. M., Mutic, S., Thomas, M., Anastasio, M. A. & Li, H., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 1153-1156 4 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Improved two step reconstruction method in Ultrasound guided Diffuse Optical Tomography

Shihab Uddin, K. M., Mostofa, A., Anastasio, M. & Zhu, Q., Jan 1 2018, Optical Tomography and Spectroscopy, OTS 2018. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F90-OTS 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Joint-reconstruction-enabled data acquisition design for single-shot edge-illumination x-ray phase-contrast tomography

Chen, Y., Zhou, W. & Anastasio, M. A., Jan 1 2018, Medical Imaging 2018: Physics of Medical Imaging. Schmidt, T. G., Chen, G-H. & Lo, J. Y. (eds.). SPIE, 1057322. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10573).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Learning-based stochastic object models for characterizing anatomical variations

Dolly, S. R., Lou, Y., Anastasio, M. A. & Li, H., Mar 14 2018, In : Physics in medicine and biology. 63, 6, 065004.

Research output: Contribution to journalArticle

Learning the ideal observer for SKE detection tasks by use of convolutional neural networks (Cum Laude Poster Award)

Zhou, W. & Anastasio, M. A., Jan 1 2018, Medical Imaging 2018: Image Perception, Observer Performance, and Technology Assessment. Samuelson, F. W. & Nishikawa, R. M. (eds.). SPIE, 1057719. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10577).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Parameterized joint reconstruction of the initial pressure and sound speed distributions for photoacoustic computed tomography

Matthews, T. P., Poudel, J., Li, L., Wang, L. V. & Anastasio, M. A., Jan 1 2018, In : SIAM Journal on Imaging Sciences. 11, 2, p. 1560-1588 29 p.

Research output: Contribution to journalArticle

Reconstruction-Aware Imaging System Ranking by use of a Sparsity-Driven Numerical Observer Enabled by Variational Bayesian Inference

Chen, Y., Lou, Y., Wang, K., Kupinski, M. A. & Anastasio, M. A., Jan 1 2018, (Accepted/In press) In : IEEE Transactions on Medical Imaging. 38, 5, p. 1251-1262 12 p., 8542729.

Research output: Contribution to journalArticle

Open Access

Subspace-based resolution-enhancing image reconstruction method for few-view differential phase-contrast tomography

Guan, H., Hagen, C. K., Olivo, A. & Anastasio, M. A., Apr 1 2018, In : Journal of Medical Imaging. 5, 2, 023501.

Research output: Contribution to journalArticle

The Effectiveness of the Omnidirectional Illumination in Full-Ring Photoacoustic Tomography

Alshahrani, S., Pattyn, A., Alijabbari, N., Yan, Y., Anastasio, M. & Mehrmohammadi, M., Dec 17 2018, 2018 IEEE International Ultrasonics Symposium, IUS 2018. IEEE Computer Society, 8580099. (IEEE International Ultrasonics Symposium, IUS; vol. 2018-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2017

A forward-adjoint operator pair based on the elastic wave equation for use in transcranial photoacoustic computed tomography

Mitsuhashi, K., Poudel, J., Matthews, T. P., Garcia-Uribe, A., Wang, L. V. & Anastasio, M. A., Jan 1 2017, In : SIAM Journal on Imaging Sciences. 10, 4, p. 2022-2048 27 p.

Research output: Contribution to journalArticle

A joint-reconstruction approach for single-shot edge illumination x-ray phase-contrast tomography

Chen, Y., Guan, H., Hagen, C. K., Olivo, A. & Anastasio, M. A., Jan 1 2017, Medical Imaging 2017: Physics of Medical Imaging. Schmidt, T. G., Lo, J. Y. & Flohr, T. G. (eds.). SPIE, 1013217. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10132).

Research output: Chapter in Book/Report/Conference proceedingConference contribution