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Research Output 1997 2019

2019
Computer-Assisted Image Processing
Tomography
Multimodal Imaging
X Ray Computed Tomography

All-reflective ring illumination system for photoacoustic tomography

Alshahrani, S. S., Yan, Y., Alijabbari, N., Pattyn, A., Avrutsky, I., Malyarenko, E., Poudel, J., Anastasio, M. A. & Mehrmohammadi, M., Apr 1 2019, In : Journal of biomedical optics. 24, 4, 046004.

Research output: Contribution to journalArticle

Open Access
Photoacoustic effect
Tomography
tomography
Lighting
illumination
Photoacoustic effect
Image Reconstruction
Tomography
Image reconstruction
Mathematical operators
Signal detection
Supervised learning
Statistics
Learning
Medical imaging
Open Access
Acoustics
Tomography
Computer-Assisted Image Processing
Multimodal Imaging
Surveys and Questionnaires

Autoencoder embedding of task-specific information

Granstedt, J., Zhou, W. & Anastasio, M. A., Mar 4 2019, p. 6.

Research output: Contribution to conferencePaper

Signal detection
Medical imaging
Covariance matrix
Imaging systems
Image quality

Automatic microscopic cell counting by use of deeply-supervised density regression model

He, S., Minn, K. T., Solnica-krezel, L., Anastasio, M. & Li, H., Mar 18 2019, p. 19.

Research output: Contribution to conferencePaper

Neural networks
Network performance
Stem cells

Automatic microscopic cell counting by use of unsupervised adversarial domain adaptation and supervised density regression

He, S., Minn, K. T., Solnica-krezel, L., Li, H. & Anastasio, M., Mar 18 2019, p. 2.

Research output: Contribution to conferencePaper

learning
stem
supervised learning
method

Compensation for non-uniform illumination and optical fluence attenuation in three-dimensional optoacoustic tomography of the breast

Park, S., Oraevsky, A. A., Su, R. & Anastasio, M. A., Mar 8 2019, p. 180.

Research output: Contribution to conferencePaper

breast
fluence
tomography
attenuation
illumination
tomography
wave propagation
wave equation
transducer
artifact

Joint-reconstruction-enabled partial-dithering strategy for edge-illumination x-ray phase-contrast tomography

Chen, Y. & Anastasio, M. A., Mar 1 2019, p. 60.

Research output: Contribution to conferencePaper

phase contrast
data acquisition
tomography
illumination
spatial resolution

Learning stochastic object model from noisy imaging measurements using AmbientGANs

Zhou, W., Bhadra, S., Brooks, F. & Anastasio, M. A., Mar 4 2019, p. 21.

Research output: Contribution to conferencePaper

Imaging techniques
Imaging systems
Statistics
Signal detection
Radon

Learning the Hotelling observer for SKE detection tasks by use of supervised learning methods

Zhou, W., Li, H. & Anastasio, M. A., Mar 4 2019, p. 7.

Research output: Contribution to conferencePaper

Signal detection
Supervised learning
Covariance matrix
Statistics
Medical imaging
Signal detection
Neural networks
Image quality
Supervised learning
Medical imaging

Preclinical small animal imaging platform providing co-registered 3D maps of photoacoustic response and fluorescence

Dumani, D. S., Yu, A., Thompson, W., Brecht, H., Ivanov, V., Anastasio, M. A., Cook, J. R., Ermilov, S. A. & Emelianov, S. Y., Mar 19 2019, p. 181.

Research output: Contribution to conferencePaper

animals
platforms
fluorescence
animal models
biomarkers

Quantification of image texture in X-ray phase-contrast-enhanced projection images of in vivo mouse lungs observed at varied inflation pressures

Brooks, F. J., Gunsten, S. P., Vasireddi, S. K., Brody, S. L. & Anastasio, M. A., Jan 1 2019, In : Physiological Reports. 7, 16, e14208.

Research output: Contribution to journalArticle

Open Access
Economic Inflation
X-Rays
Pressure
Lung
Mediastinum

Task-based image quality assessment in radiation therapy: Initial characterization and demonstration with computer-simulation study

Dolly, S. R., Lou, Y., Anastasio, M. A. & Li, H., Jul 18 2019, In : Physics in medicine and biology. 64, 14, 145020.

Research output: Contribution to journalArticle

Computer Simulation
Radiotherapy
Tomography
Therapeutics
Computer-Assisted Image Processing

X-ray CT in Phase Contrast Enhancement Geometry of Alginate Microbeads in a Whole-Animal Model

Brown, J., Somo, S., Brooks, F., Komarov, S., Zhou, W., Anastasio, M. A. & Brey, E., Jan 1 2019, (Accepted/In press) In : Annals of Biomedical Engineering.

Research output: Contribution to journalArticle

Alginate
Biomaterials
Animals
X rays
Geometry

X-ray phase contrast imaging of soft biomaterials in a whole-animal model

Brown, J., Somo, S., Brooks, F., Komarov, S., Zhou, W., Anastasio, M. A. & Brey, E., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biocompatible Materials
Biomaterials
Animals
Animal Models
X-Rays
2018

A 3D imaging system integrating photoacoustic and fluorescence orthogonal projections for anatomical, functional and molecular assessment of rodent models

Brecht, H. P., Ivanov, V., Dumani, DI. S., Emelianov, S. Y., Anastasio, M. A. & Ermilov, S. A., Jan 1 2018, Photons Plus Ultrasound: Imaging and Sensing 2018. Wang, L. V. & Oraevsky, A. A. (eds.). SPIE, 1049411. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10494).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

rodents
Photoacoustic effect
Imaging systems
Rodentia
Fluorescence

Active learning with noise modeling for medical image annotation

Wu, J., Ruan, S., Lian, C., Mutic, S., Anastasio, M. A. & Li, H., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 298-301 4 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Problem-Based Learning
Noise
Labels
Information Storage and Retrieval
Uncertainty

A deep Boltzmann machine-driven level set method for heart motion tracking using cine MRI images

Wu, J., Mazur, T. R., Ruan, S., Lian, C., Daniel, N., Lashmett, H., Ochoa, L., Zoberi, I., Anastasio, M. A., Gach, H. M., Mutic, S., Thomas, M. & Li, H., Jul 2018, In : Medical Image Analysis. 47, p. 68-80 13 p.

Research output: Contribution to journalArticle

Cine Magnetic Resonance Imaging
Magnetic resonance imaging
Radiotherapy
Statistical Models

A diffuse optical tomography system for whole-brain functional imaging in mice using multiple camera views

Markow, Z. E., Reisman, M. D., Bauer, A. Q., Eggebrecht, A. T., Anastasio, M. A. & Culver, J. P., Jan 1 2018, Optical Tomography and Spectroscopy, OTS 2018. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F90-OTS 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Brain
Cameras
Imaging techniques
Blood

An advanced photoacoustic tomography system based on a ring geometry design

Alshahrani, S., Yan, Y., Avrutsky, I., Malyarenko, E., Anastasio, M. & Mehrmohammadi, M., Jan 1 2018, Medical Imaging 2018: Ultrasonic Imaging and Tomography. Duric, N. & Byram, B. C. (eds.). SPIE, 1058005. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10580).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Photoacoustic effect
breast
Tomography
Breast
tomography

Convolutional neural network based automatic plaque characterization for intracoronary optical coherence tomography images

He, S., Zheng, J., Maehara, A., Mintz, G., Tang, D., Anastasio, M. & Li, H., Jan 1 2018, Medical Imaging 2018: Image Processing. Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 1057432. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10574).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Optical Coherence Tomography
tomography
Neural networks
Feature extraction

First point-spread function and x-ray phase-contrast imaging results with an 88-mm diameter single crystal

Lumpkin, A. H., Garson, A. B. & Anastasio, M. A., Jul 1 2018, In : Review of Scientific Instruments. 89, 7, 073704.

Research output: Contribution to journalArticle

Optical transfer function
phase contrast
point spread functions
Single crystals
Phosphors

Full-view 3D imaging system for functional and anatomical screening of the breast

Oraevsky, A., Su, R., Nguyen, H., Moore, J., Lou, Y., Bhadra, S., Forte, L., Anastasio, M. & Yang, W., Jan 1 2018, Photons Plus Ultrasound: Imaging and Sensing 2018. Wang, L. V. & Oraevsky, A. A. (eds.). SPIE, 104942Y. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10494).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Photoacoustic effect
breast
Imaging systems
Screening
Breast

Heart motion tracking on cine MRI based on a deep Boltzmann machine-driven level set method

Wu, J., Ruan, S., Mazur, T. R., Daniel, N., Lashmett, H., Ochoa, L., Zoberi, I., Lian, C., Gach, H. M., Mutic, S., Thomas, M., Anastasio, M. A. & Li, H., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 1153-1156 4 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cine Magnetic Resonance Imaging
Magnetic resonance imaging
Radiation
Radiotherapy
Toxicity

Improved two step reconstruction method in Ultrasound guided Diffuse Optical Tomography

Shihab Uddin, K. M., Mostofa, A., Anastasio, M. & Zhu, Q., Jan 1 2018, Optical Tomography and Spectroscopy, OTS 2018. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F90-OTS 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Inverse problems
Optical properties
Ultrasonics

Learning-based stochastic object models for characterizing anatomical variations

Dolly, S. R., Lou, Y., Anastasio, M. A. & Li, H., Mar 14 2018, In : Physics in medicine and biology. 63, 6, 065004.

Research output: Contribution to journalArticle

Anatomic Models
Learning
Anatomy
Computer Simulation
Aptitude

Learning the ideal observer for SKE detection tasks by use of convolutional neural networks (Cum Laude Poster Award)

Zhou, W. & Anastasio, M. A., Jan 1 2018, Medical Imaging 2018: Image Perception, Observer Performance, and Technology Assessment. Samuelson, F. W. & Nishikawa, R. M. (eds.). SPIE, 1057719. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10577).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Posters
Supervised learning
ROC Curve
Image quality
learning

Parameterized joint reconstruction of the initial pressure and sound speed distributions for photoacoustic computed tomography

Matthews, T. P., Poudel, J., Li, L., Wang, L. V. & Anastasio, M. A., Jan 1 2018, In : SIAM Journal on Imaging Sciences. 11, 2, p. 1560-1588 29 p.

Research output: Contribution to journalArticle

Photoacoustic Tomography
Photoacoustic effect
Computed Tomography
Tomography
Acoustic waves

Reconstruction-Aware Imaging System Ranking by use of a Sparsity-Driven Numerical Observer Enabled by Variational Bayesian Inference

Chen, Y., Lou, Y., Wang, K., Kupinski, M. A. & Anastasio, M. A., Jan 1 2018, (Accepted/In press) In : IEEE Transactions on Medical Imaging. 38, 5, p. 1251-1262 12 p., 8542729.

Research output: Contribution to journalArticle

Open Access
Imaging systems
Hardware
Imaging techniques
Computer-Assisted Image Processing
Data acquisition

Subspace-based resolution-enhancing image reconstruction method for few-view differential phase-contrast tomography

Guan, H., Hagen, C. K., Olivo, A. & Anastasio, M. A., Apr 1 2018, In : Journal of Medical Imaging. 5, 2, 023501.

Research output: Contribution to journalArticle

Computer-Assisted Image Processing
Tomography
X-Rays
Lighting
Artifacts

The Effectiveness of the Omnidirectional Illumination in Full-Ring Photoacoustic Tomography

Alshahrani, S., Pattyn, A., Alijabbari, N., Yan, Y., Anastasio, M. & Mehrmohammadi, M., Dec 17 2018, 2018 IEEE International Ultrasonics Symposium, IUS 2018. IEEE Computer Society, 8580099. (IEEE International Ultrasonics Symposium, IUS; vol. 2018-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

breast
tomography
illumination
rings
cancer
2017

A forward-adjoint operator pair based on the elastic wave equation for use in transcranial photoacoustic computed tomography

Mitsuhashi, K., Poudel, J., Matthews, T. P., Garcia-Uribe, A., Wang, L. V. & Anastasio, M. A., Jan 1 2017, In : SIAM Journal on Imaging Sciences. 10, 4, p. 2022-2048 27 p.

Research output: Contribution to journalArticle

Photoacoustic Tomography
Adjoint Operator
Photoacoustic effect
Elastic Waves
Elastic waves

A joint-reconstruction approach for single-shot edge illumination x-ray phase-contrast tomography

Chen, Y., Guan, H., Hagen, C. K., Olivo, A. & Anastasio, M. A., Jan 1 2017, Medical Imaging 2017: Physics of Medical Imaging. Schmidt, T. G., Lo, J. Y. & Flohr, T. G. (eds.). SPIE, 1013217. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10132).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

phase contrast
Lighting
shot
Tomography
tomography

A resolution-enhancing image reconstruction method for few-view differential phase-contrast tomography

Guan, H. & Anastasio, M. A., Jan 1 2017, Medical Imaging 2017: Physics of Medical Imaging. Schmidt, T. G., Lo, J. Y. & Flohr, T. G. (eds.). SPIE, 1013216. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10132).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer-Assisted Image Processing
phase contrast
image reconstruction
Image reconstruction
Tomography

Design and development of a full-ring ultrasound and photoacoustic tomography system for breast cancer imaging

Alshahrani, S., Yan, Y., Avrutsky, I., Anastasio, M., Malyarenko, E., Duric, N. & Mehrmohammadi, M., Oct 31 2017, 2017 IEEE International Ultrasonics Symposium, IUS 2017. IEEE Computer Society, 8092129. (IEEE International Ultrasonics Symposium, IUS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

breast
tomography
cancer
rings
lesions

Estimating posterior image variance with sparsity-based object priors for MRI

Chen, Y., Lou, Y., Eldeniz, C., An, H. & Anastasio, M. A., Jan 1 2017, Medical Imaging 2017: Physics of Medical Imaging. Schmidt, T. G., Lo, J. Y. & Flohr, T. G. (eds.). SPIE, 101321J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10132).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnetic resonance imaging
Probability distributions
Distribution functions
estimating
Bayes Theorem

Half-time image reconstruction in photoacoustic tomography

Anastasio, M. A., Zhang, J., Pan, X. & Wang, L. V., Jan 1 2017, Photoacoustic Imaging and Spectroscopy. CRC Press, p. 155-163 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Computer-Assisted Image Processing
Photoacoustic effect
image reconstruction
Image reconstruction
Tomography

Image reconstruction for ultrasound computed tomography by use of the regularized dual averaging method

Matthews, T. P., Wang, K., Li, C., Duric, N. & Anastasio, M. A., Jan 1 2017, Medical Imaging 2017: Ultrasonic Imaging and Tomography. Duric, N., Duric, N. & Heyde, B. (eds.). SPIE, 101390P. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10139).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer-Assisted Image Processing
image reconstruction
Image reconstruction
Tomography
tomography

Image reconstruction in optoacoustic tomography accounting for frequency-dependent attenuation

La Rivière, P., Zhang, J. & Anastasio, M. A., Jan 1 2017, Photoacoustic Imaging and Spectroscopy. CRC Press, p. 145-154 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Computer-Assisted Image Processing
Photoacoustic effect
image reconstruction
Image reconstruction
Tomography

Iterative image reconstruction in elastic inhomogenous media with application to transcranial photoacoustic tomography

Poudel, J., Matthews, T. P., Mitsuhashi, K., Garcia-Uribe, A., Wang, L. V. & Anastasio, M. A., Jan 1 2017, Medical Imaging 2017: Ultrasonic Imaging and Tomography. Duric, N., Duric, N. & Heyde, B. (eds.). SPIE, 101390C. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10139).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer-Assisted Image Processing
Photoacoustic effect
elastic media
image reconstruction
Image reconstruction
Photoacoustic effect
Computed Tomography
Acoustic wave velocity
Ultrasound
Tomography

Joint reconstruction of the sound speed and initial pressure distributions for ultrasound computed tomography and photoacoustic computed tomography

Matthews, T. P. & Anastasio, M. A., Jan 1 2017, Medical Imaging 2017: Ultrasonic Imaging and Tomography. Duric, N., Duric, N. & Heyde, B. (eds.). SPIE, 101390B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10139).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Photoacoustic effect
pressure distribution
Pressure distribution
Tomography
tomography

Learning-based stochastic object models for use in optimizing imaging systems

Dolly, S. R., Anastasio, M. A., Yu, L. & Li, H., Jan 1 2017, Medical Imaging 2017: Physics of Medical Imaging. Schmidt, T. G., Lo, J. Y. & Flohr, T. G. (eds.). SPIE, 101321T. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10132).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Imaging systems
learning
Anatomy
Learning
Anatomic Models
Photoacoustic effect
Acoustic properties
Tomography
artifacts
tomography

Recent advances in edge illumination x-ray phase-contrast tomography

Zamir, A., Hagen, C., Diemoz, P. C., Endrizzi, M., Vittoria, F., Chen, Y., Anastasio, M. A. & Olivo, A., Oct 1 2017, In : Journal of Medical Imaging. 4, 4, 040901.

Research output: Contribution to journalReview article

Open Access
Lighting
Tomography
X-Rays
Synchrotrons
Three-Dimensional Imaging

Regularized Dual Averaging Image Reconstruction for Full-Wave Ultrasound Computed Tomography

Matthews, T. P., Wang, K., Li, C., Duric, N. & Anastasio, M. A., May 2017, In : IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control. 64, 5, p. 811-825 15 p., 7878669.

Research output: Contribution to journalArticle

Open Access
descent
image reconstruction
Image reconstruction
Tomography
tomography