Liudmila Sergeevna Mainzer

20072019
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Research Output 2007 2019

  • 13 Article
  • 2 Conference contribution
  • 1 Review article
2019

An assessment of true and false positive detection rates of stepwise epistatic model selection as a function of sample size and number of markers

Chen, A. H., Ge, W., Metcalf, W., Jakobsson, E., Mainzer, L. S. & Lipka, A. E., May 1 2019, In : Heredity. 122, 5, p. 660-671 12 p.

Research output: Contribution to journalArticle

Sample Size
Gene Frequency
Zea mays
Nucleotides
Genome

Managing genomic variant calling workflows with Swift/T

Ahmed, A. E., Heldenbrand, J., Asmann, Y., Fadlelmola, F. M., Katz, D. S., Kendig, K., Kendzior, M. C., Li, T., Ren, Y., Rodriguez, E., Weber, M. R., Wozniak, J. M., Zermeno, J. & Mainzer, L. S., Jan 1 2019, In : PloS one. 14, 7, e0211608.

Research output: Contribution to journalArticle

Open Access
Workflow
genomics
bioinformatics
management systems
Bioinformatics
2018

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics

Baichoo, S., Souilmi, Y., Panji, S., Botha, G., Meintjes, A., Hazelhurst, S., Bendou, H., Beste, E. D., Mpangase, P. T., Souiai, O., Alghali, M., Yi, L., O'Connor, B. D., Crusoe, M., Armstrong, D., Aron, S., Joubert, F., Ahmed, A. E., Mbiyavanga, M., Heusden, P. V. & 6 others, Magosi, L. E., Zermeno, J., Mainzer, L. S., Fadlelmola, F. M., Jongeneel, C. V. & Mulder, N., Nov 29 2018, In : BMC bioinformatics. 19, 1, 457.

Research output: Contribution to journalArticle

Heterogeneous Computing
Workflow
Bioinformatics
Genomics
Computational Biology

Identification of missing variants by combining multiple analytic pipelines

Ren, Y., Reddy, J. S., Pottier, C., Sarangi, V., Tian, S., Sinnwell, J. P., McDonnell, S. K., Biernacka, J. M., Carrasquillo, M. M., Ross, O. A., Ertekin-Taner, N., Rademakers, R., Hudson, M., Mainzer, L. S. & Asmann, Y. W., Apr 16 2018, In : BMC bioinformatics. 19, 1, 139.

Research output: Contribution to journalArticle

Sample Size
Pipelines
Gene Frequency
Alzheimer Disease
Sequencing
2017

Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network

Jongeneel, C. V., Achinike-Oduaran, O., Adebiyi, E., Adebiyi, M., Adeyemi, S., Akanle, B., Aron, S., Ashano, E., Bendou, H., Botha, G., Chimusa, E., Choudhury, A., Donthu, R., Drnevich, J., Falola, O., Fields, C. J., Hazelhurst, S., Hendry, L., Isewon, I., Khetani, R. S. & 20 others, Kumuthini, J., Kimuda, M. P., Magosi, L., Mainzer, L. S., Maslamoney, S., Mbiyavanga, M., Meintjes, A., Mugutso, D., Mpangase, P., Munthali, R., Nembaware, V., Ndhlovu, A., Odia, T., Okafor, A., Oladipo, O., Panji, S., Pillay, V., Rendon, G., Sengupta, D. & Mulder, N., Jun 1 2017, In : PLoS computational biology. 13, 6, e1005419.

Research output: Contribution to journalArticle

bioinformatics
Bioinformatics
Genomics
Computational Biology
Exercise
2016

Efficient and scalable workflows for genomic analyses

Banerjee, S. S., Athreya, A. P., Mainzer, L. S., Jongeneel, C., Hwu, W-M. W., Kalbarczyk, Z. T. & Iyer, R. K., Jun 1 2016, DIDC 2016 - Proceedings of the ACM International Workshop on Data-Intensive Distributed Computing. Association for Computing Machinery, Inc, p. 27-36 10 p. (DIDC 2016 - Proceedings of the ACM International Workshop on Data-Intensive Distributed Computing).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Work Flow
Genomics
DNA sequences
Parallel processing systems
Cloud computing

H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa

The H3ABioNet Consortium, Feb 1 2016, In : Genome Research. 26, 2, p. 271-277 7 p.

Research output: Contribution to journalArticle

Heredity
Computational Biology
Health
Genomics
Research

Simulating next-generation sequencing datasets from empirical mutation and sequencing models

Stephens, Z. D., Hudson, M., Mainzer, L. S., Taschuk, M., Weber, M. R. & Iyer, R. K., Nov 1 2016, In : PloS one. 11, 11, e0167047.

Research output: Contribution to journalArticle

Genes
mutation
Mutation
genome
Simulators
2013

A general framework of persistence strategies for biological systems helps explain domains of life

Mainzer, L. S., Wielgos, M., Thomas, S., Nasir, A., Wang, M., Mittenthal, J. E. & Caetano-Anolles, G., Apr 19 2013, In : Frontiers in Genetics. 4, FEB, Article 16.

Research output: Contribution to journalArticle

Archaea
Optic Disk
Eukaryota
Automatic Data Processing
Reproduction
Pyrococcus abyssi
Pyrococcus
Pyrococcus furiosus
amino acid
protein content
2011

Putative lateral inhibition in sensory processing for directional turns

Mainzer, L. S. & Gillette, R., Jun 1 2011, In : Journal of neurophysiology. 105, 6, p. 2885-2890 6 p.

Research output: Contribution to journalArticle

Peripheral Nervous System
Pleurobranchaea
Gastropoda
Aptitude
Sigmoid Colon
2009

The origin and evolution of modern metabolism

Caetano-Anolles, G., Mainzer, L. S., Gee, H., Caetano-Anollés, D., Kim, H. S. & Mittenthal, J. E., Feb 1 2009, In : International Journal of Biochemistry and Cell Biology. 41, 2, p. 285-297 13 p.

Research output: Contribution to journalReview article

Metabolism
Enzymes
Genomics
Nucleotides
Prebiotics
2008

Origins and evolution of modern biochemistry: Insights from genomes and molecular structure

Caetano-Anolles, G., Sun, F. J., Wang, M., Mainzer, L. S., Harish, A., Kim, H. S., Knudsen, V., Caetano-Anolles, D. & Mittenthal, J. E., May 1 2008, In : Frontiers in Bioscience. 13, 14, p. 5212-5240 29 p.

Research output: Contribution to journalArticle

Biochemistry
Molecular Structure
Molecular structure
Proteome
Genes
2007

Orienting and avoidance turning are precisely computed by the predatory sea-slug Pleurobranchaea californica McFarland

Mainzer, L. S., Anthony, C. W., Lane, L., Campbell, J. K. & Gillette, R., Feb 1 2007, In : Journal of Experimental Biology. 210, 4, p. 561-569 9 p.

Research output: Contribution to journalArticle

Pleurobranchaea
Gastropoda
slugs
slug
Oceans and Seas

Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world

Wang, M., Mainzer, L. S., Caetano-Anollés, D., Mittenthal, J. E. & Caetano-Anolles, G., Nov 1 2007, In : Genome Research. 17, 11, p. 1572-1585 14 p.

Research output: Contribution to journalArticle

Proteome
Parturition
Archaea
Proteins
Eukaryota

Robotic tools in neuroscience education

Mainzer, L. S., Rogers, J. J. & Lewis, M. A., Dec 28 2007, Robots and Robot Venues: Resources for AI Education - Papers from the 2007 AAAI Spring Symposium, Technical Report. p. 187-190 4 p. (AAAI Spring Symposium - Technical Report; vol. SS-07-09).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Robotics
Education
Printed circuit boards
Robots
Neurons