Liudmila Sergeevna Mainzer

20072019

Research output per year

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Research Output

  • 15 Article
  • 2 Conference contribution
  • 1 Review article

An assessment of true and false positive detection rates of stepwise epistatic model selection as a function of sample size and number of markers

Chen, A. H., Ge, W., Metcalf, W., Jakobsson, E., Mainzer, L. S. & Lipka, A. E., May 1 2019, In : Heredity. 122, 5, p. 660-671 12 p.

Research output: Contribution to journalArticle

  • Managing genomic variant calling workflows with Swift/T

    Ahmed, A. E., Heldenbrand, J., Asmann, Y., Fadlelmola, F. M., Katz, D. S., Kendig, K., Kendzior, M. C., Li, T., Ren, Y., Rodriguez, E., Weber, M. R., Wozniak, J. M., Zermeno, J. & Mainzer, L. S., Jan 1 2019, In : PloS one. 14, 7, e0211608.

    Research output: Contribution to journalArticle

    Open Access
  • Recommendations for performance optimizations when using GATK3.8 and GATK4

    Heldenbrand, J. R., Baheti, S., Bockol, M. A., Drucker, T. M., Hart, S. N., Hudson, M. E., Iyer, R. K., Kalmbach, M. T., Kendig, K. I., Klee, E. W., Mattson, N. R., Wieben, E. D., Wiepert, M., Wildman, D. E. & Mainzer, L. S., Nov 8 2019, In : BMC bioinformatics. 20, 1, 557.

    Research output: Contribution to journalArticle

    Open Access
  • SentIeon DNaSeq variant calling workflow demonstrates strong computational performance and accuracy

    Kendig, K. I., Baheti, S., Bockol, M. A., Drucker, T. M., Hart, S. N., Heldenbrand, J. R., Hernaez, M., Hudson, M. E., Kalmbach, M. T., Klee, E. W., Mattson, N. R., Ross, C. A., Taschuk, M., Wieben, E. D., Wiepert, M., Wildman, D. E. & Mainzer, L. S., Jan 1 2019, In : Frontiers in Genetics. 10, JUL, 736.

    Research output: Contribution to journalArticle

    Open Access
  • Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics

    Baichoo, S., Souilmi, Y., Panji, S., Botha, G., Meintjes, A., Hazelhurst, S., Bendou, H., Beste, E. D., Mpangase, P. T., Souiai, O., Alghali, M., Yi, L., O'Connor, B. D., Crusoe, M., Armstrong, D., Aron, S., Joubert, F., Ahmed, A. E., Mbiyavanga, M., Heusden, P. V. & 6 others, Magosi, L. E., Zermeno, J., Mainzer, L. S., Fadlelmola, F. M., Jongeneel, C. V. & Mulder, N., Nov 29 2018, In : BMC bioinformatics. 19, 1, 457.

    Research output: Contribution to journalArticle