Liudmila Sergeevna Mainzer

20072019
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Fingerprint Fingerprint is based on mining the text of the expert's scholarly documents to create an index of weighted terms, which defines the key subjects of each individual researcher.

Computational Biology Medicine & Life Sciences
Genomics Medicine & Life Sciences
Pleurobranchaea Medicine & Life Sciences
Proteome Medicine & Life Sciences
Genome Medicine & Life Sciences
Sample Size Medicine & Life Sciences
Work Flow Mathematics
Gastropoda Medicine & Life Sciences

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Research Output 2007 2019

  • 12 Article
  • 2 Conference contribution
  • 1 Review article

An assessment of true and false positive detection rates of stepwise epistatic model selection as a function of sample size and number of markers

Chen, A. H., Ge, W., Metcalf, W., Jakobsson, E., Mainzer, L. S. & Lipka, A. E., May 1 2019, In : Heredity. 122, 5, p. 660-671 12 p.

Research output: Contribution to journalArticle

Sample Size
Gene Frequency
Zea mays
Nucleotides
Genome

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics

Baichoo, S., Souilmi, Y., Panji, S., Botha, G., Meintjes, A., Hazelhurst, S., Bendou, H., Beste, E. D., Mpangase, P. T., Souiai, O., Alghali, M., Yi, L., O'Connor, B. D., Crusoe, M., Armstrong, D., Aron, S., Joubert, F., Ahmed, A. E., Mbiyavanga, M., Heusden, P. V. & 6 othersMagosi, L. E., Zermeno, J., Mainzer, L. S., Fadlelmola, F. M., Jongeneel, C. V. & Mulder, N., Nov 29 2018, In : BMC bioinformatics. 19, 1, 457.

Research output: Contribution to journalArticle

Heterogeneous Computing
Workflow
Bioinformatics
Genomics
Computational Biology

Identification of missing variants by combining multiple analytic pipelines

Ren, Y., Reddy, J. S., Pottier, C., Sarangi, V., Tian, S., Sinnwell, J. P., McDonnell, S. K., Biernacka, J. M., Carrasquillo, M. M., Ross, O. A., Ertekin-Taner, N., Rademakers, R., Hudson, M., Mainzer, L. S. & Asmann, Y. W., Apr 16 2018, In : BMC bioinformatics. 19, 1, 139.

Research output: Contribution to journalArticle

Sample Size
Pipelines
Gene Frequency
Alzheimer Disease
Sequencing

Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network

Jongeneel, C. V., Achinike-Oduaran, O., Adebiyi, E., Adebiyi, M., Adeyemi, S., Akanle, B., Aron, S., Ashano, E., Bendou, H., Botha, G., Chimusa, E., Choudhury, A., Donthu, R., Drnevich, J., Falola, O., Fields, C. J., Hazelhurst, S., Hendry, L., Isewon, I., Khetani, R. S. & 20 othersKumuthini, J., Kimuda, M. P., Magosi, L., Mainzer, L. S., Maslamoney, S., Mbiyavanga, M., Meintjes, A., Mugutso, D., Mpangase, P., Munthali, R., Nembaware, V., Ndhlovu, A., Odia, T., Okafor, A., Oladipo, O., Panji, S., Pillay, V., Rendon, G., Sengupta, D. & Mulder, N., Jun 1 2017, In : PLoS computational biology. 13, 6, e1005419.

Research output: Contribution to journalArticle

bioinformatics
Bioinformatics
Genomics
Computational Biology
Exercise

Efficient and scalable workflows for genomic analyses

Banerjee, S. S., Athreya, A. P., Mainzer, L. S., Jongeneel, C., Hwu, W-M. W., Kalbarczyk, Z. T. & Iyer, R. K., Jun 1 2016, DIDC 2016 - Proceedings of the ACM International Workshop on Data-Intensive Distributed Computing. Association for Computing Machinery, Inc, p. 27-36 10 p. (DIDC 2016 - Proceedings of the ACM International Workshop on Data-Intensive Distributed Computing).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Work Flow
Genomics
DNA sequences
Parallel processing systems
Cloud computing