Liudmila Sergeevna Mainzer

20072019
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  • 1 Similar Profiles
Computational Biology Medicine & Life Sciences
Workflow Medicine & Life Sciences
Genomics Medicine & Life Sciences
Pleurobranchaea Medicine & Life Sciences
Genome Medicine & Life Sciences
Proteome Medicine & Life Sciences
Sample Size Medicine & Life Sciences
Bioinformatics Chemical Compounds

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Research Output 2007 2019

  • 14 Article
  • 2 Conference contribution
  • 1 Review article

An assessment of true and false positive detection rates of stepwise epistatic model selection as a function of sample size and number of markers

Chen, A. H., Ge, W., Metcalf, W., Jakobsson, E., Mainzer, L. S. & Lipka, A. E., May 1 2019, In : Heredity. 122, 5, p. 660-671 12 p.

Research output: Contribution to journalArticle

Sample Size
Gene Frequency
Zea mays
Nucleotides
Genome

Managing genomic variant calling workflows with Swift/T

Ahmed, A. E., Heldenbrand, J., Asmann, Y., Fadlelmola, F. M., Katz, D. S., Kendig, K., Kendzior, M. C., Li, T., Ren, Y., Rodriguez, E., Weber, M. R., Wozniak, J. M., Zermeno, J. & Mainzer, L. S., Jan 1 2019, In : PloS one. 14, 7, e0211608.

Research output: Contribution to journalArticle

Open Access
Workflow
genomics
bioinformatics
management systems
Bioinformatics

SentIeon DNaSeq variant calling workflow demonstrates strong computational performance and accuracy

Kendig, K. I., Baheti, S., Bockol, M. A., Drucker, T. M., Hart, S. N., Heldenbrand, J. R., Hernaez, M., Hudson, M., Kalmbach, M. T., Klee, E. W., Mattson, N. R., Ross, C. A., Taschuk, M., Wieben, E. D., Wiepert, M., Wildman, D. E. & Mainzer, L. S., Jan 1 2019, In : Frontiers in Genetics. 10, JUL, 736.

Research output: Contribution to journalArticle

Open Access
Workflow
Genome
Software

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics

Baichoo, S., Souilmi, Y., Panji, S., Botha, G., Meintjes, A., Hazelhurst, S., Bendou, H., Beste, E. D., Mpangase, P. T., Souiai, O., Alghali, M., Yi, L., O'Connor, B. D., Crusoe, M., Armstrong, D., Aron, S., Joubert, F., Ahmed, A. E., Mbiyavanga, M., Heusden, P. V. & 6 others, Magosi, L. E., Zermeno, J., Mainzer, L. S., Fadlelmola, F. M., Jongeneel, C. V. & Mulder, N., Nov 29 2018, In : BMC bioinformatics. 19, 1, 457.

Research output: Contribution to journalArticle

Heterogeneous Computing
Workflow
Bioinformatics
Genomics
Computational Biology

Identification of missing variants by combining multiple analytic pipelines

Ren, Y., Reddy, J. S., Pottier, C., Sarangi, V., Tian, S., Sinnwell, J. P., McDonnell, S. K., Biernacka, J. M., Carrasquillo, M. M., Ross, O. A., Ertekin-Taner, N., Rademakers, R., Hudson, M., Mainzer, L. S. & Asmann, Y. W., Apr 16 2018, In : BMC bioinformatics. 19, 1, 139.

Research output: Contribution to journalArticle

Sample Size
Pipelines
Gene Frequency
Alzheimer Disease
Sequencing