Research Output per year
Research Output 1978 2019
- 1 - 50 out of 122 results
- Publication Year, Title (descending)
Allele-specific enhancer interaction at the Peg3 imprinted domain
Kim, J., Frey, W. D., Sharma, K., Ghimire, S., Teruyama, R. & Stubbs, L., Jan 1 2019, In : PloS one. 14, 10, e0224287.Research output: Contribution to journal › Article
A Mouse Mutation That Dysregulates Neighboring Galnt17 and Auts2 Genes Is Associated with Phenotypes Related to the Human AUTS2 Syndrome
Weisner, P. A., Chen, C. Y., Sun, Y., Yoo, J., Kao, W. C., Zhang, H., Baltz, E. T., Troy, J. M. & Stubbs, L., Nov 5 2019, In : G3 (Bethesda, Md.). 9, 11, p. 3891-3906 16 p.Research output: Contribution to journal › Article
An extended regulatory landscape drives Tbx18 activity in a variety of prostate-associated cell lineages
Negi, S., Bolt, C. C., Zhang, H. & Stubbs, L. J., Feb 15 2019, In : Developmental Biology. 446, 2, p. 180-192 13 p.Research output: Contribution to journal › Article
Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge
Saul, M. C., Blatti, C., Yang, W., Bukhari, S. A., Shpigler, H. Y., Troy, J. M., Seward, C. H., Sloofman, L., Chandrasekaran, S., Bell, A. M., Stubbs, L., Robinson, G. E., Zhao, S. D. & Sinha, S., Jan 2019, In : Genes, Brain and Behavior. p. e12502Research output: Contribution to journal › Article
Honey bee neurogenomic responses to affiliative and agonistic social interactions
Shpigler, H. Y., Saul, M. C., Murdoch, E. E., Corona, F., Cash-Ahmed, A. C., Seward, C. H., Chandrasekaran, S., Stubbs, L. J. & Robinson, G. E., Jan 2019, In : Genes, Brain and Behavior. 18, 1, e12509.Research output: Contribution to journal › Article
Behavioral, transcriptomic and epigenetic responses to social challenge in honey bees
Shpigler, H. Y., Saul, M. C., Murdoch, E. E., Cash-Ahmed, A. C., Seward, C. H., Sloofman, L., Chandrasekaran, S., Sinha, S., Stubbs, L. J. & Robinson, G. E., Jul 2017, In : Genes, Brain and Behavior. 16, 6, p. 579-591 13 p.Research output: Contribution to journal › Article
Comparative analysis of weighted gene coexpression networks in human and mouse
Eidsaa, M., Stubbs, L. & Almaas, E., Nov 2017, In : PloS one. 12, 11, e0187611.Research output: Contribution to journal › Article
Temporal dynamics of neurogenomic plasticity in response to social interactions in male threespined sticklebacks
Bukhari, S. A., Saul, M. C., Seward, C. H., Zhang, H., Bensky, M., James, N., Zhao, S. D., Chandrasekaran, S., Stubbs, L. & Bell, A. M., Jul 2017, In : PLoS genetics. 13, 7, e1006840.Research output: Contribution to journal › Article
Transcriptional regulatory dynamics drive coordinated metabolic and neural response to social challenge in mice
Saul, M. C., Seward, C. H., Troy, J. M., Zhang, H., Sloofman, L. G., Lu, X., Weisner, P. A., Caetano-Anolles, D., Sun, H., Zhao, S. D., Chandrasekaran, S., Sinha, S. & Stubbs, L., Jun 2017, In : Genome Research. 27, 6, p. 959-972 14 p.Research output: Contribution to journal › Article
A Hox-Embedded Long Noncoding RNA: Is It All Hot Air?
Selleri, L., Bartolomei, M. S., Bickmore, W. A., He, L., Stubbs, L., Reik, W. & Barsh, G. S., Dec 2016, In : PLoS genetics. 12, 12, e1006485.Research output: Contribution to journal › Comment/debate
Tbx18 Regulates the Differentiation of Periductal Smooth Muscle Stroma and the Maintenance of Epithelial Integrity in the Prostate
Bolt, C. C., Negi, S., Guimarães-Camboa, N., Zhang, H., Troy, J. M., Lu, X., Kispert, A., Evans, S. M. & Stubbs, L., Jan 1 2016, In : PloS one. 11, 4, p. e0154413Research output: Contribution to journal › Article
ZSCAN5B and primate-specific paralogs bind RNA polymerase III genes and extra-TFIIIC (ETC) sites to modulate mitotic progression
Sun, Y., Zhang, H., Kazemian, M., Troy, J. M., Seward, C., Lu, X. & Stubbs, L., Jan 1 2016, In : Oncotarget. 7, 45, p. 72571-72592 22 p.Research output: Contribution to journal › Article
Roles of progesterone receptor A and B isoforms during human endometrial decidualization
Kaya, H. S., Hantak, A. M., Stubbs, L. J., Taylor, R. N., Bagchi, I. C. & Bagchi, M. K., Jun 1 2015, In : Molecular Endocrinology. 29, 6, p. 882-895 14 p.Research output: Contribution to journal › Article
A distant downstream enhancer directs essential expression of Tbx18 in urogenital tissues
Bolt, C. C., Elso, C. M., Lu, X., Pan, F., Kispert, A. & Stubbs, L. J., Aug 15 2014, In : Developmental Biology. 392, 2, p. 483-493 11 p.Research output: Contribution to journal › Article
Deep vertebrate roots for mammalian zinc finger transcription factor subfamilies
Liu, H., Chang, L. H., Sun, Y., Lu, X. & Stubbs, L. J., Mar 2014, In : Genome biology and evolution. 6, 3, p. 510-525 16 p.Research output: Contribution to journal › Article
Neuromolecular responses to social challenge: Common mechanisms across mouse, stickleback fish, and honey bee
Rittschof, C. C., Bukhari, S. A., Sloofman, L. G., Troy, J. M., Caetano-Anollés, D., Cash-Ahmed, A., Kent, M., Lu, X., Sanogo, Y. O., Weisner, P. A., Zhang, H., Bell, A. M., Ma, J., Sinha, S., Robinson, G. E. & Stubbs, L., Dec 16 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 50, p. 17929-17934 6 p.Research output: Contribution to journal › Article
A reciprocal translocation dissects roles of Pax6 alternative promoters and upstream regulatory elements in the development of pancreas, brain, and eye
Elso, C., Lu, X., Weisner, P. A., Thompson, H. L., Skinner, A., Carver, E. & Stubbs, L. J., Sep 1 2013, In : Genesis. 51, 9, p. 630-646 17 p.Research output: Contribution to journal › Article
Editorial
Stubbs, L. J., May 1 2012, In : Briefings in Functional Genomics. 11, 3, 1 p., els021.Research output: Contribution to journal › Editorial
Function and evolution of C2H2 zinc finger arrays
Stubbs, L. J., Sun, Y. & Caetano-Anolles, D., Jan 1 2011, In : Sub-Cellular Biochemistry. 52, p. 75-94 20 p.Research output: Contribution to journal › Article
Gain, loss and divergence in primate Zinc-Finger genes: A rich resource for evolution of gene regulatory differences between species
Nowick, K., Fields, C. J., Gernat, T., Caetano-Anolles, D., Kholina, N. & Stubbs, L. J., Jul 1 2011, In : PloS one. 6, 6, e21553.Research output: Contribution to journal › Article
Lineage-specific transcription factors and the evolution of gene regulatory networks
Nowick, K. & Stubbs, L., Jan 16 2010, In : Briefings in Functional Genomics and Proteomics. 9, 1, p. 65-78 14 p., elp056.Research output: Contribution to journal › Article
Rapid sequence and expression divergence suggest selection for novel function in primate-specific KRAB-ZNF genes
Nowick, K., Hamilton, A. T., Zhang, H. & Stubbs, L. J., Nov 1 2010, In : Molecular biology and evolution. 27, 11, p. 2606-2617 12 p.Research output: Contribution to journal › Article
Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain
Nowick, K., Gernat, T., Almaas, E. & Stubbs, L., Dec 19 2009, In : Proceedings of the National Academy of Sciences of the United States of America. 106, 52, p. 22358-22363 6 p.Research output: Contribution to journal › Article
Lineage-specific biology revealed by a finished genome assembly of the mouse
Church, D. M., Goodstadt, L., Hillier, L. W., Zody, M. C., Goldstein, S., She, X., Bult, C. J., Agarwala, R., Cherry, J. L., DiCuccio, M., Hlavina, W., Kapustin, Y., Meric, P., Maglott, D., Birtle, Z., Marques, A. C., Graves, T., Zhou, S., Teague, B., Potamousis, K. & 155 others, , May 1 2009, In : PLoS biology. 7, 5, e1000112.Research output: Contribution to journal › Article
Germline translocations in mice: Unique tools for analyzing gene function and long-distance regulatory mechanisms
Elso, C., Lu, X., Morrison, S., Tarver, A., Thompson, H., Thurkow, H., Yamada, N. A. & Stubbs, L., Sep 25 2008, In : Journal of the National Cancer Institute - Monographs. 39, p. 91-95 5 p.Research output: Contribution to journal › Article
Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions
Gordon, L., Yang, S., Tran-Gyamfi, M., Baggott, D., Christensen, M., Hamilton, A., Crooijmans, R., Groenen, M., Lucas, S., Ovcharenko, I. & Stubbs, L., Nov 1 2007, In : Genome Research. 17, 11, p. 1603-1613 11 p.Research output: Contribution to journal › Article
Extent of linkage disequilibrium in chicken
Aerts, J., Megens, H. J., Veenendaal, T., Ovcharenko, I., Crooijmans, R., Gordon, L., Stubbs, L. & Groenen, M., Jul 1 2007, In : Cytogenetic and Genome Research. 117, 1-4, p. 338-345 8 p.Research output: Contribution to journal › Article
Genomic organization and imprinting of the Peg3 domain in bovine
Kim, J., Bergmann, A., Choo, J. H. & Stubbs, L., Jul 1 2007, In : Genomics. 90, 1, p. 85-92 8 p.Research output: Contribution to journal › Article
YY1 as a controlling factor for the Peg3 and Gnas imprinted domains
Do Kim, J., Hinz, A. K., Ha Choo, J., Stubbs, L. J. & Kim, J., Feb 1 2007, In : Genomics. 89, 2, p. 262-269 8 p.Research output: Contribution to journal › Article
A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors
Huntley, S., Baggott, D. M., Hamilton, A. T., Tran-Gyamfi, M., Yang, S., Kim, J., Gordon, L., Branscomb, E. & Stubbs, L., May 1 2006, In : Genome Research. 16, 5, p. 669-677 9 p.Research output: Contribution to journal › Article
Allele-specific deposition of macroH2A1 in imprinting control regions
Choo, J. H., Kim, J. D., Chung, J. H., Stubbs, L. & Kim, J., Mar 1 2006, In : Human molecular genetics. 15, 5, p. 717-724 8 p.Research output: Contribution to journal › Article
Evolutionary expansion and divergence in the ZNF91 subfamily of primate-specific zinc finger genes
Hamilton, A. T., Huntley, S., Tran-Gyamfi, M., Baggott, D. M., Gordon, L. & Stubbs, L. J., May 1 2006, In : Genome Research. 16, 5, p. 584-594 11 p.Research output: Contribution to journal › Article
Identification of clustered YY1 binding sites in imprinting control regions
Kim, J. D., Hinz, A. K., Bergmann, A., Huang, J. M., Ovcharenko, I., Stubbs, L. & Kim, J., Jul 10 2006, In : Genome Research. 16, 7, p. 901-911 11 p.Research output: Contribution to journal › Article
Rapid evolution of a recently retroposed transcription factor YY2 in mammalian genomes
Luo, C., Lu, X., Stubbs, L. J. & Kim, J., Mar 1 2006, In : Genomics. 87, 3, p. 348-355 8 p.Research output: Contribution to journal › Article
A mutation in NFkB interacting protein 1 results in cardiomyopathy and abnormal skin development in wa3 mice
Herron, B. J., Rao, C., Liu, S., Laprade, L., Richardson, J. A., Oliveri, E., Semsarian, C., Millar, S. E., Stubbs, L. & Beier, D. R., Mar 1 2005, In : Human molecular genetics. 14, 5, p. 667-677 11 p.Research output: Contribution to journal › Article
Evolution and functional classification of vertebrate gene deserts
Ovcharenko, I., Loots, G. G., Nobrega, M. A., Hardison, R. C., Miller, W. & Stubbs, L., Jan 1 2005, In : Genome Research. 15, 1, p. 137-145 9 p.Research output: Contribution to journal › Article
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
Ovcharenko, I., Loots, G. G., Giardine, B. M., Hou, M., Ma, J., Hardison, R. C., Stubbs, L. & Miller, W., Jan 1 2005, In : Genome Research. 15, 1, p. 184-194 11 p.Research output: Contribution to journal › Article
Two reciprocal translocations provide new clues to the high mutability of the Grid2 locus
Robinson, K. O., Petersen, A. M., Morrison, S. N., Elso, C. M. & Stubbs, L. J., Jan 1 2005, In : Mammalian Genome. 16, 1, p. 32-40 9 p.Research output: Contribution to journal › Article
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms
Wong, G. K. S., Liu, B., Wang, J., Zhang, Y., Yang, X., Zhang, Z., Meng, Q., Zhou, J., Li, D., Zhang, J., Ni, P., Li, S., Ran, L., Li, H., Zhang, J., Li, R., Li, S., Zheng, H., Lin, W., Li, G. & 94 others, , Dec 9 2004, In : Nature. 432, 7018, p. 717-722 6 p.Research output: Contribution to journal › Article
ECR Browser: A tool for visualizing and accessing data from comparisons of multiple vertebrate genomes
Ovcharenko, I., Nobrega, M. A., Loots, G. G. & Stubbs, L. J., Jul 1 2004, In : Nucleic acids research. 32, WEB SERVER ISS.Research output: Contribution to journal › Article
Heightened susceptibility to chronic gastritis, hyperplasia and metaplasia in Kcnq1 mutant mice
Elso, C. M., Lu, X., Culiat, C. T., Rutledge, J. C., Cacheiro, N. L. A., Generoso, W. M. & Stubbs, L. J., Nov 15 2004, In : Human molecular genetics. 13, 22, p. 2813-2821 9 p.Research output: Contribution to journal › Article
Interpreting mammalian evolution using Fugu genome comparisons
Ovcharenko, I., Stubbs, L. J. & Loots, G. G., Nov 1 2004, In : Genomics. 84, 5, p. 890-895 6 p.Research output: Contribution to journal › Article
Lineage-specific imprinting and evolution of the zinc-finger gene ZIM2
Kim, J., Bergmann, A., Lucas, S., Stone, R. & Stubbs, L., Jul 1 2004, In : Genomics. 84, 1, p. 47-58 12 p.Research output: Contribution to journal › Article
Photon scanning tunneling microscopy of unstained mammalian cells and chromosomes
Meriaudeau, F., Stubbs, L., Parks, J. E., Jacobson, K. B., Goudonnet, J. P. & Ferrell, T. L., Dec 1 2004, In : Proceedings of SPIE - The International Society for Optical Engineering. 2782, p. 828-835 8 p.Research output: Contribution to journal › Conference article
The DNA sequence and biology of human chromosome 19
Grimwood, J., Gordon, L. A., Olsen, A., Terry, A., Schmutz, J., Lamerdin, J., Hellsten, U., Goodstein, D., Couronne, O., Tran-Gyamil, M., Aerts, A., Altherr, M., Ashworth, L., Bajorek, E., Black, S., Branscomb, E., Caenepeel, S., Carrano, A., Caoile, C., Chan, Y. M. & 78 others, , Apr 1 2004, In : Nature. 428, 6982, p. 529-535 7 p.Research output: Contribution to journal › Article
zPicture: Dynamic alignment and visualization tool for analyzing conservation profiles
Ovcharenko, I., Loots, G. G., Hardison, R. C., Miller, W. & Stubbs, L. J., Mar 1 2004, In : Genome Research. 14, 3, p. 472-477 6 p.Research output: Contribution to journal › Article
A rule-based framework for gene regulation pathways discovery
Wilczyński, B., Hvidsten, T., Kryshtafovych, A., Stubbs, L., Komorowski, J. & Fidelis, K., Jan 1 2003, Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003. Institute of Electrical and Electronics Engineers Inc., p. 435-436 2 p. 1227361. (Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters
Shannon, M., Hamilton, A. T., Gordon, L., Branscomb, E. & Stubbs, L., Jun 1 2003, In : Genome Research. 13, 6 A, p. 1097-1110 14 p.Research output: Contribution to journal › Article
Lineage-specific expansion of KRAB zinc-finger transcription factor genes: Implications for the evolution of vertebrate regulatory networks
Hamilton, A. T., Huntley, S., Kim, J., Branscomb, E. & Stubbs, L. J., Jan 1 2003, In : Cold Spring Harbor symposia on quantitative biology. 68, p. 131-140 10 p.Research output: Contribution to journal › Article
Methylation-sensitive binding of transcription factor YY1 to an insulator sequence within the paternally expressed imprinted gene, Peg3
Kim, J., Kollhoff, A., Bergmann, A. & Stubbs, L., Feb 1 2003, In : Human molecular genetics. 12, 3, p. 233-245 13 p.Research output: Contribution to journal › Review article