Kevin Paul Johnson

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2020

Extensive in situ radiation of feather lice on tinamous

Herrera, S. V., Sweet, A. D., Allen, J. M., Walden, K. K. O., Weckstein, J. D. & Johnson, K. P., Feb 26 2020, In : Proceedings of the Royal Society B: Biological Sciences. 287, 1921, 20193005.

Research output: Contribution to journalArticle

Mitochondrial genomes of Columbicola feather lice are highly fragmented, indicating repeated evolution of minicircle-type genomes in parasitic lice

Sweet, A. D., Johnson, K. P. & Cameron, S. L., Jan 1 2020, In : PeerJ. 2020, 3, 8759.

Research output: Contribution to journalArticle

Open Access

Phylogenomics of Auchenorrhyncha (Insecta: Hemiptera) using transcriptomes: examining controversial relationships via degeneracy coding and interrogation of gene conflict

Skinner, R. K., Dietrich, C. H., Walden, K. K. O., Gordon, E., Sweet, A. D., Podsiadlowski, L., Petersen, M., Simon, C., Takiya, D. M. & Johnson, K. P., Jan 1 2020, In : Systematic Entomology. 45, 1, p. 85-113 29 p.

Research output: Contribution to journalArticle

Two evolutionary units on the South American razor clam Ensis macha (Bivalvia: Pharidae): genetic and morphometric evidence

Márquez, F., Trovant, B., Van der Molen, S., Sepúlveda, R. D., Doña, J., Johnson, K. P. & Vierna, J., Jan 1 2020, (Accepted/In press) In : Organisms Diversity and Evolution.

Research output: Contribution to journalArticle

2019

A molecular phylogenetic analysis of the genera of fruit doves and allies using dense taxonomic sampling

Nowak, J., Sweet, A. D., Weckstein, J. D. & Johnson, K. P., Aug 15 2019, In : Illinois Natural History Survey Bulletin. 42, p. 1-14

Research output: Contribution to journalArticle

Deep Instability in the Phylogenetic Backbone of Heteroptera is Only Partly Overcome by Transcriptome-Based Phylogenomics

de Moya, R. S., Weirauch, C., Sweet, A. D., Skinner, R. K., Walden, K. K. O., Swanson, D. R., Dietrich, C. H. & Johnson, K. P., 2019, In : Insect Systematics and Diversity. 3, 6

Research output: Contribution to journalArticle

Dew-bathing in the atlantic forest endemic robust woodpecker campephilus robustus (Lichtenstein, 1823) (Aves: Picidae)

Smith, P. & Johnson, K. P., Jan 1 2019, In : Turkish Journal of Zoology. 43, 4, p. 400-402 3 p.

Research output: Contribution to journalArticle

Open Access

Extensive host-switching of avian feather lice following the Cretaceous-Paleogene mass extinction event

de Moya, R. S., Allen, J. M., Sweet, A. D., Walden, K. K. O., Palma, R. L., Smith, V. S., Cameron, S. L., Valim, M. P., Galloway, T. D., Weckstein, J. D. & Johnson, K. P., Nov 29 2019, In : Communications biology. 2, 1, 1 p., 445.

Research output: Contribution to journalArticle

Open Access

Feather mites play a role in cleaning host feathers: New insights from DNA metabarcoding and microscopy

Doña, J., Proctor, H., Serrano, D., Johnson, K. P., Oploo, A. O. V., Huguet-Tapia, J. C., Ascunce, M. S. & Jovani, R., Jan 2019, In : Molecular ecology. 28, 2, p. 203-218 16 p.

Research output: Contribution to journalArticle

Host defense triggers rapid adaptive radiation in experimentally evolving parasites

Bush, S. E., Villa, S. M., Altuna, J. C., Johnson, K. P., Shapiro, M. D. & Clayton, D. H., Apr 2019, In : Evolution letters. 3, 2, p. 120-128 9 p.

Research output: Contribution to journalArticle

Open Access

Nuclear orthologs derived from whole genome sequencing indicate cryptic diversity in the Bemisia tabaci (Insecta: Aleyrodidae) complex of whiteflies

de Moya, R. S., Brown, J. K., Sweet, A. D., Kimberly, K. K., Paredes-Montero, J. R., Waterhouse, R. M. & Johnson, K. P., Sep 1 2019, In : Diversity. 11, 9, 151.

Research output: Contribution to journalArticle

Open Access

Persistence of single species of symbionts across multiple closely-related host species

Doña, J., Osuna-Mascaró, C., Johnson, K. P., Serrano, D., Aymí, R. & Jovani, R., Dec 1 2019, In : Scientific reports. 9, 1, 17442.

Research output: Contribution to journalArticle

Open Access

Phylogenomic analysis of seal lice reveals codivergence with their hosts

Leonardi, M. S., Virrueta Herrera, S., Sweet, A., Negrete, J. & Johnson, K. P., Oct 1 2019, In : Systematic Entomology. 44, 4, p. 699-708 10 p.

Research output: Contribution to journalArticle

Rapid experimental evolution of reproductive isolation from a single natural population

Villa, S. M., Altuna, J. C., Ruff, J. S., Beach, A. B., Mulvey, L. I., Poole, E. J., Campbell, H. E., Johnson, K. P., Shapiro, M. D., Bush, S. E. & Clayton, D. H., Jul 2 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 27, p. 13440-13445 6 p.

Research output: Contribution to journalArticle

Open Access

Two lineages of kingfisher feather lice exhibit differing degrees of cospeciation with their hosts

Catanach, T. A., Johnson, K. P., Marks, B. D., Moyle, R. G., Valim, M. P. & Weckstein, J. D., Jul 1 2019, In : Parasitology. 146, 8, p. 1083-1095 13 p.

Research output: Contribution to journalArticle

2018

Brochosomins and other novel proteins from brochosomes of leafhoppers (Insecta, Hemiptera, Cicadellidae)

Rakitov, R., Moysa, A. A., Kopylov, A. T., Moshkovskii, S. A., Peters, R. S., Meusemann, K., Misof, B., Dietrich, C. H., Johnson, K. P., Podsiadlowski, L. & Walden, K. K. O., Mar 1 2018, In : Insect Biochemistry and Molecular Biology. 94, p. 10-17 8 p.

Research output: Contribution to journalArticle

Composition and distribution of lice (Insecta: Phthiraptera) on Colombian and Peruvian birds: New data on louse-host association in the Neotropics

Soto-Patiño, J., Londoño, G. A., Johnson, K. P., Weckstein, J. D., Avendaño, J. E., Catanach, T. A., Sweet, A. D., Cook, A. T., Jankowski, J. E. & Allen, J., Jan 1 2018, In : Biodiversity Data Journal. 6, e21635.

Research output: Contribution to journalArticle

Cophylogenetic analysis of lice in the Colpocephalum complex (Phthiraptera: Amblycera)

Catanach, T. A., Valim, M. P., Weckstein, J. D. & Johnson, K. P., Jan 2018, In : Zoologica Scripta. 47, 1, p. 72-83 12 p.

Research output: Contribution to journalArticle

Host and parasite morphology influence congruence between host and parasite phylogenies

Sweet, A. D., Bush, S. E., Gustafsson, D. R., Allen, J. M., DiBlasi, E., Skeen, H. R., Weckstein, J. D. & Johnson, K. P., Jul 2018, In : International Journal for Parasitology. 48, 8, p. 641-648 8 p.

Research output: Contribution to journalArticle

Integrating phylogenomic and population genomic patterns in avian lice provides a more complete picture of parasite evolution

Sweet, A. D., Boyd, B. M., Allen, J. M., Villa, S. M., Valim, M. P., Rivera-Parra, J. L., Wilson, R. E. & Johnson, K. P., Jan 2018, In : Evolution. 72, 1, p. 95-112 18 p.

Research output: Contribution to journalArticle

Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon

Vickrey, A. I., Bruders, R., Kronenberg, Z., Mackey, E., Bohlender, R. J., Maclary, E. T., Maynez, R., Osborne, E. J., Johnson, K. P., Huff, C. D., Yandell, M. & Shapiro, M. D., Jul 17 2018, In : eLife. 7, e34803.

Research output: Contribution to journalArticle

Mitochondrial phylogenomics and genome rearrangements in the barklice (Insecta: Psocodea)

Yoshizawa, K., Johnson, K. P., Sweet, A. D., Yao, I., Ferreira, R. L. & Cameron, S. L., Feb 2018, In : Molecular Phylogenetics and Evolution. 119, p. 118-127 10 p.

Research output: Contribution to journalArticle

Paraclaravis, a new genus for the purple-winged and Maroon-chested ground-doves (Aves: Columbidae)

Sangster, G., Sweet, A. D. & Johnson, K. P., Aug 20 2018, In : Zootaxa. 4461, 1, p. 134-140 7 p.

Research output: Contribution to journalArticle

Phoretic dispersal influences parasite population genetic structure

DiBlasi, E., Johnson, K. P., Stringham, S. A., Hansen, A. N., Beach, A. B., Clayton, D. H. & Bush, S. E., Jun 2018, In : Molecular ecology. 27, 12, p. 2770-2779 10 p.

Research output: Contribution to journalArticle

Phylogenomics and the evolution of hemipteroid insects

Johnson, K. P., Dietrich, C. H., Friedrich, F., Beutel, R. G., Wipfler, B., Peters, R. S., Allen, J. M., Petersen, M., Donath, A., Walden, K. K. O., Kozlov, A. M., Podsiadlowski, L., Mayer, C., Meusemann, K., Vasilikopoulos, A., Waterhouse, R. M., Cameron, S. L., Weirauch, C., Swanson, D. R., Percy, D. M. & 7 others, Hardy, N. B., Terry, I., Liu, S., Zhou, X., Misof, B., Robertson, H. M. & Yoshizawa, K., Dec 11 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 50, p. 12775-12780 6 p.

Research output: Contribution to journalArticle

Simultaneous radiation of bird and mammal lice following the K-Pg boundary

Johnson, K. P., Nguyen, N. P., Sweet, A. D., Boyd, B. M., Warnow, T. & Allen, J. M., Jan 1 2018, In : Biology Letters. 14, 5, 20180141.

Research output: Contribution to journalArticle

The role of parasite dispersal in shaping a host–parasite system at multiple evolutionary scales

Sweet, A. D. & Johnson, K. P., Dec 2018, In : Molecular ecology. 27, 24, p. 5104-5119 16 p.

Research output: Contribution to journalArticle

2017

Anchored Hybrid Enrichment-Based Phylogenomics of Leafhoppers and Treehoppers (Hemiptera: Cicadomorpha: Membracoidea)

Dietrich, C. H., Allen, J. M., Lemmon, A. R., Lemmon, E. M., Takiya, D. M., Evangelista, O., Walden, K. K. O., Grady, P. G. S. & Johnson, K. P., 2017, In : Insect Systematics and Diversity. 1, 1, p. 57-72 16 p.

Research output: Contribution to journalArticle

Comparative cophylogenetics of Australian phabine pigeons and doves (Aves: Columbidae) and their feather lice (Insecta: Phthiraptera)

Sweet, A. D., Chesser, R. T. & Johnson, K. P., May 2017, In : International Journal for Parasitology. 47, 6, p. 347-356 10 p.

Research output: Contribution to journalArticle

Cophylogenetic analyses reveal extensive host-shift speciation in a highly specialized and host-specific symbiont system

Doña, J., Sweet, A. D., Johnson, K. P., Serrano, D., Mironov, S. & Jovani, R., Oct 2017, In : Molecular Phylogenetics and Evolution. 115, p. 190-196 7 p.

Research output: Contribution to journalArticle

Host sympatry and body size influence parasite straggling rate in a highly connected multihost, multiparasite system

Rivera-Parra, J. L., Levin, I. I., Johnson, K. P. & Parker, P. G., Jun 2017, In : Ecology and Evolution. 7, 11, p. 3724-3731 8 p.

Research output: Contribution to journalArticle

Multiple trans-beringia dispersals of the barklouse genus Trichadenotecnum (Insecta: Psocodea: Psocidae)

Yoshizawa, K., Johnson, K. P., Yao, I., González, J. A. C., Bess, E. & Aldrete, A. N. G., Jan 1 2017, In : Biological Journal of the Linnean Society. 121, 3, p. 501-513 13 p.

Research output: Contribution to journalArticle

Phylogenomics from whole genome sequences using aTRAM

Allen, J. M., Boyd, B., Nguyen, N. P., Vachaspati, P., Warnow, T., Huang, D. I., Grady, P. G. S., Bell, K. C., Cronk, Q. C. B., Mugisha, L., Pittendrigh, B. R., Leonardi, M. S., Reed, D. L. & Johnson, K. P., Sep 1 2017, In : Systematic biology. 66, 5, p. 786-798 13 p.

Research output: Contribution to journalArticle

Phylogenomics using Target-Restricted Assembly Resolves Intrageneric Relationships of Parasitic Lice (Phthiraptera: Columbicola)

Boyd, B. M., Allen, J. M., Nguyen, N. P., Sweet, A. D., Warnow, T., Shapiro, M. D., Villa, S. M., Bush, S. E., Clayton, D. H. & Johnson, K. P., Nov 1 2017, In : Systematic biology. 66, 6, p. 896-911 16 p.

Research output: Contribution to journalArticle

Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice

Boyd, B. M., Allen, J. M., Nguyen, N. P., Vachaspati, P., Quicksall, Z. S., Warnow, T., Mugisha, L., Johnson, K. P. & Reed, D. L., Jul 1 2017, In : Molecular biology and evolution. 34, 7, p. 1743-1757 15 p.

Research output: Contribution to journalArticle

2016

Assessing genotype-phenotype associations in three dorsal colour morphs in the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) using genomic and transcriptomic resources

Rodrigues, A. S. B., Silva, S. E., Pina-Martins, F., Loureiro, J., Castro, M., Gharbi, K., Johnson, K. P., Dietrich, C. H., Borges, P. A. V., Quartau, J. A., Jiggins, C. D., Paulo, O. S. & Seabra, S. G., Nov 15 2016, In : BMC genetics. 17, 1, 144.

Research output: Contribution to journalArticle

Comparative phylogeography of two codistributed subgenera of cave crickets (Orthoptera: Rhaphidophoridae: Ceuthophilus spp.)

Weckstein, J. D., Johnson, K. P., Murdoch, J. D., Krejca, J. K., Takiya, D. M., Veni, G., Reddell, J. R. & Taylor, S. J., Jul 1 2016, In : Journal of Biogeography. 43, 7, p. 1450-1463 14 p.

Research output: Contribution to journalArticle

Cophylogenetic patterns are uncorrelated between two lineages of parasites on the same hosts

Sweet, A. D., Boyd, B. M. & Johnson, K. P., Aug 1 2016, In : Biological Journal of the Linnean Society. 118, 4, p. 813-828 16 p.

Research output: Contribution to journalArticle

Evolution of the assassin's arms: Insights from a phylogeny of combined transcriptomic and ribosomal DNA data (Heteroptera: Reduvioidea)

Zhang, J., Gordon, E. R. L., Forthman, M., Hwang, W. S., Walden, K., Swanson, D. R., Johnson, K. P., Meier, R. & Weirauch, C., Feb 26 2016, In : Scientific reports. 6, 22177.

Research output: Contribution to journalArticle

Patterns of cryptic host specificity in duck lice based on molecular data

Escalante, G. C., Sweet, A. D., Mccracken, K. G., Gustafsson, D. R., Wilson, R. E. & Johnson, K. P., Jun 1 2016, In : Medical and Veterinary Entomology. 30, 2, p. 200-208 9 p.

Research output: Contribution to journalArticle

Two bacterial genera, Sodalis and Rickettsia, associated with the seal louse Proechinophthirus fluctus (Phthiraptera: Anoplura)

Boyd, B. M., Allen, J. M., Koga, R., Fukatsu, T., Sweet, A. D., Johnson, K. P. & Reed, D. L., Jun 1 2016, In : Applied and environmental microbiology. 82, 11, p. 3185-3197 13 p.

Research output: Contribution to journalArticle

Unlocking the black box of feather louse diversity: A molecular phylogeny of the hyper-diverse genus Brueelia

Bush, S. E., Weckstein, J. D., Gustafsson, D. R., Allen, J., DiBlasi, E., Shreve, S. M., Boldt, R., Skeen, H. R. & Johnson, K. P., Jan 1 2016, In : Molecular Phylogenetics and Evolution. 94, B, p. 737-751 15 p.

Research output: Contribution to journalArticle

2015

aTRAM - automated target restricted assembly method: A fast method for assembling loci across divergent taxa from next-generation sequencing data

Allen, J. M., Huang, D. I., Cronk, Q. C. & Johnson, K. P., Dec 12 2015, In : BMC bioinformatics. 16, 1, 98.

Research output: Contribution to journalArticle

Data supporting a molecular phylogeny of the hyper-diverse genus Brueelia

Bush, S. E., Weckstein, J. D., Gustafsson, D. R., Allen, J., DiBlasi, E., Shreve, S. M., Boldt, R., Skeen, H. R. & Johnson, K. P., Dec 1 2015, In : Data in Brief. 5, p. 1078-1091 14 p.

Research output: Contribution to journalArticle

Independent origins of the feather lice (Insecta: Degeeriella) of raptors

Catanach, T. A. & Johnson, K. P., Apr 1 2015, In : Biological Journal of the Linnean Society. 114, 4, p. 837-847 11 p.

Research output: Contribution to journalArticle

Lineage sorting in multihost parasites: Eidmanniella albescens and Fregatiella aurifasciata on seabirds from the Galapagos Islands

Rivera-Parra, J. L., Levin, I. I., Johnson, K. P. & Parker, P. G., Aug 1 2015, In : Ecology and Evolution. 5, 16, p. 3264-3271 8 p.

Research output: Contribution to journalArticle

Patterns of diversification in small New World ground doves are consistent with major geologic events

Sweet, A. D. & Johnson, K. P., Jan 1 2015, In : Auk. 132, 1, p. 300-312 13 p.

Research output: Contribution to journalArticle