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Research Output 1985 2019

2019

Bioinspired glycosaminoglycan hydrogels via click chemistry for 3D dynamic cell encapsulation

Kuang, L., Damayanti, N. P., Jiang, C., Fei, X., Liu, W., Narayanan, N., Irudayaraj, J. M. K., Campanella, O. & Deng, M., Feb 5 2019, In : Journal of Applied Polymer Science. 136, 5, 47212.

Research output: Contribution to journalArticle

Hydrogels
Hydrogel
Glycosaminoglycans
Encapsulation
Gelation

Correction to: Superplastic Formation of Metal Nanostructure Arrays with Ultrafine Gaps (Advanced Materials, (2016), 28, 41, (9152-9162), 10.1002/adma.201602497)

Hu, Y., Xuan, Y., Wang, X., Deng, B., Saei, M., Jin, S., Irudayaraj, J. M. K. & Cheng, G. J., Apr 5 2019, In : Advanced Materials. 31, 14, 1900190.

Research output: Contribution to journalComment/debate

Open Access
Nanostructures
Metals
Lasers
Nanoparticles
Ultrafine

Epigenetic biomarker screening by FLIM-FRET for combination therapy in ER+ breast cancer

Liu, W., Cui, Y., Ren, W. & Irudayaraj, J. M. K., Jan 30 2019, In : Clinical epigenetics. 11, 1, 16.

Research output: Contribution to journalArticle

Optical Imaging
Energy Transfer
Epigenomics
Estrogen Receptors
Biomarkers

Epigenetic Process Monitoring in Live Cultures with Peptide Biosensors

Damayanti, N. P., Buno, K., Voytik Harbin, S. L. & Irudayaraj, J. M. K., Mar 22 2019, In : ACS Sensors. 4, 3, p. 562-565 4 p.

Research output: Contribution to journalArticle

acetylation
Acetylation
Acetyltransferases
Process monitoring
bioinstrumentation

Laser Shock Tuning Dynamic Interlayer Coupling in Graphene-Boron Nitride Moiré Superlattices

Kumar, P., Liu, J., Motlag, M., Tong, L., Hu, Y., Huang, X., Bandopadhyay, A., Pati, S. K., Ye, L., Irudayaraj, J. & Cheng, G. J., Jan 9 2019, In : Nano letters. 19, 1, p. 283-291 9 p.

Research output: Contribution to journalArticle

Graphite
Boron nitride
Superlattices
boron nitrides
Graphene

Magnetic Focus Lateral Flow Sensor for Detection of Cervical Cancer Biomarkers

Ren, W., Mohammed, S. I., Wereley, S. & Irudayaraj, J. M. K., Feb 19 2019, In : Analytical chemistry. 91, 4, p. 2876-2884 9 p.

Research output: Contribution to journalArticle

Tumor Biomarkers
Sensors
Biomarkers
Proteins
Nanoprobes

Modulation of gene silencing by Cdc7p via H4 K16 acetylation and phosphorylation of chromatin assembly factor CAF-1 in saccharomyces cerevisiae

Young, T. J., Cui, Y., Irudayaraj, J. M. K. & Kirchmaier, A. L., Apr 2019, In : Genetics. 211, 4, p. 1219-1237 19 p.

Research output: Contribution to journalArticle

Chromatin Assembly Factor-1
Gene Silencing
Acetylation
Saccharomyces cerevisiae
Phosphorylation

Plasmonic enhancement in lateral flow sensors for improved sensing of E. coli O157:H7

Ren, W., Ballou, D. R., FitzGerald, R. & Irudayaraj, J. M. K., Feb 1 2019, In : Biosensors and Bioelectronics. 126, p. 324-331 8 p.

Research output: Contribution to journalArticle

Polyethyleneimine
Escherichia coli O157
Gold
Nanoparticles
Escherichia coli

Prenatal and ancestral exposure to di(2-ethylhexyl) phthalate alters gene expression and DNA methylation in mouse ovaries

Rattan, S., Beers, H. K., Kannan, A., Ramakrishnan, A., Brehm, E., Bagchi, I. C., Irudayaraj, J. M. K. & Flaws, J. A., Sep 15 2019, In : Toxicology and Applied Pharmacology. 379, 114629.

Research output: Contribution to journalArticle

DNA Methylation
Gene expression
Ovary
Gene Expression
Cytosine

The transition structure of chromatin fibers at the nanoscale probed by cryogenic electron tomography

Zhou, Z., Li, K., Yan, R., Yu, G., Gilpin, C. J., Jiang, W. & Irudayaraj, J. M. K., Aug 7 2019, In : Nanoscale. 11, 29, p. 13783-13789 7 p.

Research output: Contribution to journalArticle

Transcription
Cryogenics
Chromatin
Tomography
Electrons
Fluorescence microscopy
Fluorescence Microscopy
Epigenomics
Molecules
Gene expression
2018

Alpha Lead Oxide (α-PbO): A New 2D Material with Visible Light Sensitivity

Kumar, P., Liu, J., Ranjan, P., Hu, Y., Yamijala, S. S. R. K. C., Pati, S. K., Irudayaraj, J. & Cheng, G. J., Mar 22 2018, In : Small. 14, 12, 1703346.

Research output: Contribution to journalArticle

Lead oxide
Photophobia
Photosensitivity
Optics and Photonics
Light

An ultrasensitive aptasensor based on fluorescent resonant energy transfer and exonuclease-assisted target recycling for patulin detection

Wu, Z., Xu, E., Jin, Z. & Irudayaraj, J. M. K., May 30 2018, In : Food Chemistry. 249, p. 136-142 7 p.

Research output: Contribution to journalArticle

Patulin
patulin
Exonucleases
Energy Transfer
Recycling

Current technologies of electrochemical immunosensors: Perspective on signal amplification

Cho, I. H., Lee, J., Kim, J., Kang, M. S., Paik, J. K., Ku, S., Cho, H. M., Irudayaraj, J. M. K. & Kim, D. H., Jan 12 2018, In : Sensors (Switzerland). 18, 1, 207.

Research output: Contribution to journalReview article

Immunosensors
Nanostructures
Biosensing Techniques
Nanostructured materials
Biosensors

Electrospun probiotics: An alternative for encapsulation

Akbar, Z., Zahoor, T., Huma, N., Jamil, A., Ayesha, H. & Irudayaraj, J. M. K., Nov 2018, In : Journal of Biological Regulators and Homeostatic Agents. 32, 6, p. 1551-1556 6 p.

Research output: Contribution to journalArticle

Probiotics
Nanofibers
Temperature
Alcohols
Streptococcus thermophilus

Exploring the anti-quorum sensing activity of a d-limonene nanoemulsion for Escherichia coli O157:H7

Wang, R., Vega, P., Xu, Y., Chen, C. Y. & Irudayaraj, J. M. K., Jul 2018, In : Journal of Biomedical Materials Research - Part A. 106, 7, p. 1979-1986 8 p.

Research output: Contribution to journalArticle

Escherichia coli
Genes
Emulsification
Biofilms
Cell growth
Graphene
Raman scattering
Membranes
Fabrication
Substrates

Impedimetric detection of bacteria by using a microfluidic chip and silver nanoparticle based signal enhancement

Wang, R., Xu, Y., Sors, T., Irudayaraj, J. M. K., Ren, W. & Wang, R., Mar 1 2018, In : Microchimica Acta. 185, 3, 184.

Research output: Contribution to journalArticle

Silver
Microfluidics
Escherichia coli
Bacteria
Nanoparticles

Ultrasound beam steering of oxygen nanobubbles for enhanced bladder cancer therapy

Bhandari, P., Novikova, G., Goergen, C. J. & Irudayaraj, J., Dec 1 2018, In : Scientific reports. 8, 1, 3112.

Research output: Contribution to journalArticle

Urinary Bladder Neoplasms
Oxygen
Pharmaceutical Preparations
Neoplasms
Therapeutics
2017

A net fishing enrichment strategy for colorimetric detection of E. coli O157:H7

Ren, W., Liu, W. & Irudayaraj, J. M. K., Jan 1 2017, In : Sensors and Actuators, B: Chemical. 247, p. 923-929 7 p.

Research output: Contribution to journalArticle

fishing
Pathogens
Escherichia coli
pathogens
Nitrocellulose

An integrated microsystem with dielectrophoresis enrichment and impedance detection for detection of Escherichia coli

Wang, R., Xu, Y., Liu, H., Peng, J., Irudayaraj, J. M. K. & Cui, F., Jun 1 2017, In : Biomedical microdevices. 19, 2, 34.

Research output: Contribution to journalArticle

Escherichia coli O157
Microelectrodes
Microsystems
Electrophoresis
Electric Impedance

A reusable laser wrapped graphene-Ag array based SERS sensor for trace detection of genomic DNA methylation

Ouyang, L., Hu, Y., Zhu, L., Cheng, G. J. & Irudayaraj, J. M. K., Jun 15 2017, In : Biosensors and Bioelectronics. 92, p. 755-762 8 p.

Research output: Contribution to journalArticle

Graphite
Raman Spectrum Analysis
DNA Methylation
Graphene
Raman spectroscopy

Basic studies on epigenetic carcinogenesis of low-dose exposure to 1-trichloromethyl-1,2,3,4-tetrahydro-β-carboline (TaClo) in vitro

Wang, R., Cui, Y., Xu, Y. & Irudayaraj, J., Feb 2017, In : PloS one. 12, 2, e0172243.

Research output: Contribution to journalArticle

Carbolines
carcinogenicity
DNA methylation
DNA Methylation
Epigenomics
RNA Precursors
Alternative Splicing
Gene Expression Profiling
RNA
Molecular biology

Bimodal counterpropagating-responsive sensing material for the detection of histamine

Wu, Z., Xu, E., Jiao, A., Jin, Z. & Irudayaraj, J. M. K., Jan 1 2017, In : RSC Advances. 7, 71, p. 44933-44944 12 p.

Research output: Contribution to journalArticle

Histamine
Raman scattering
Polymers
Fluorescence
Food safety

Comparative in vitro toxicity assessment of perfluorinated carboxylic acids

Mahapatra, C. T., Damayanti, N. P., Guffey, S. C., Serafin, J. S., Irudayaraj, J. M. K. & Sepúlveda, M. S., Jun 2017, In : Journal of Applied Toxicology. 37, 6, p. 699-708 10 p.

Research output: Contribution to journalArticle

perfluorooctanoic acid
Carboxylic Acids
Metabolism
Toxicity
Carbon

Electron spin contrast of Purcell-enhanced nitrogen-vacancy ensembles in nanodiamonds

Bogdanov, S., Shalaginov, M. Y., Akimov, A., Lagutchev, A. S., Kapitanova, P., Liu, J., Woods, D., Ferrera, M., Belov, P., Irudayaraj, J. M. K., Boltasseva, A. & Shalaev, V. M., Jul 25 2017, In : Physical Review B. 96, 3, 035146.

Research output: Contribution to journalArticle

Nanodiamonds
electron spin
Vacancies
Nitrogen
nitrogen

Epigenetic Editing of Ascl1 Gene in Neural Stem Cells by Optogenetics

Lo, C. L., Choudhury, S. R., Irudayaraj, J. M. K. & Zhou, F. C., Feb 9 2017, In : Scientific Reports. 7, 42047.

Research output: Contribution to journalArticle

Optogenetics
Neural Stem Cells
Epigenomics
Catalytic Domain
Methylation

EZH2 modifies sunitinib resistance in renal cell carcinoma by kinome reprogramming

Adelaiye-Ogala, R., Budka, J., Damayanti, N. P., Arrington, J., Ferris, M., Hsu, C. C., Chintala, S., Orillion, A., Miles, K. M., Shen, L., Elbanna, M., Ciamporcero, E., Arisa, S., Pettazzoni, P., Draetta, G. F., Seshadri, M., Hancock, B., Radovich, M., Kota, J., Buck, M. & 9 others, Keilhack, H., McCarthy, B. P., Persohn, S. A., Territo, P. R., Zang, Y., Irudayaraj, J. M. K., Tao, W. A., Hollenhorst, P. & Pili, R., Dec 1 2017, In : Cancer Research. 77, 23, p. 6651-6666 16 p.

Research output: Contribution to journalArticle

Renal Cell Carcinoma
Receptor Protein-Tyrosine Kinases
Transferases
Drug Resistance
Heterografts

Highly sensitive fluorescence sensing of zearalenone using a novel aptasensor based on upconverting nanoparticles

Wu, Z., Xu, E., Chughtai, M. F. J., Jin, Z. & Irudayaraj, J. M. K., Sep 1 2017, In : Food Chemistry. 230, p. 673-680 8 p.

Research output: Contribution to journalArticle

Zearalenone
zearalenone
nanoparticles
Nanoparticles
Fluorescence

Hypoxia re-programming oxygen nanobubbles sensitize human glioblastoma cells to temozolomide via methylation alterations

Bhandari, P., Lei, O. & Irudayaraj, J. M. K., Oct 2017, In : Journal of Bionanoscience. 11, 5, p. 337-345 9 p.

Research output: Contribution to journalArticle

temozolomide
Methylation
Glioblastoma
Oxygen
Cell death

In vivo biodetection using surface-enhanced raman spectroscopy

Lee, S., Kadam, U. S., Craig, A. P. & Irudayaraj, J. M. K., Jan 1 2017, Biosensors Based on Nanomaterials and Nanodevices. Li, J. & Wu, N. (eds.). CRC Press, p. 157-178 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Raman Spectrum Analysis
Nanostructures
Raman spectroscopy
Electromagnetic Fields
Refractometry

Monitoring focal adhesion kinase phosphorylation dynamics in live cells

Damayanti, N. P., Buno, K., Narayanan, N., Voytik Harbin, S. L., Deng, M. & Irudayaraj, J. M. K., Aug 7 2017, In : Analyst. 142, 15, p. 2713-2716 4 p.

Research output: Contribution to journalArticle

Focal Adhesion Protein-Tyrosine Kinases
Phosphorylation
adhesion
Adhesion
Monitoring

Multiplex single-cell quantification of rare RNA transcripts from protoplasts in a model plant system

Kadam, U. S., Schulz, B. & Irudayaraj, J. M. K., Jun 2017, In : Plant Journal. 90, 6, p. 1187-1195 9 p.

Research output: Contribution to journalArticle

Protoplasts
messenger RNA
Gold
Raman spectroscopy
gold

Optical microscopy and spectroscopy for epigenetic modifications in single living cells

Cui, Y. & Irudayaraj, J. M. K., Jan 1 2017, Methods in Pharmacology and Toxicology. Humana Press Inc., p. 135-154 20 p. (Methods in Pharmacology and Toxicology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Epigenomics
Microscopy
Spectrum Analysis
Optical Imaging
Physiological Phenomena

Oxygen nanobubbles revert hypoxia by methylation programming

Bhandari, P. N., Cui, Y., Elzey, B. D., Goergen, C. J., Long, C. M. & Irudayaraj, J. M. K., Dec 1 2017, In : Scientific reports. 7, 1, 9268.

Research output: Contribution to journalArticle

Methylation
Oxygen
Neoplasms
Epigenomics
Contrast Media

Oxygen Nanobubble Tracking by Light Scattering in Single Cells and Tissues

Bhandari, P., Wang, X. & Irudayaraj, J. M. K., Mar 28 2017, In : ACS Nano. 11, 3, p. 2682-2688 7 p.

Research output: Contribution to journalArticle

Light scattering
light scattering
Tissue
Oxygen
oxygen

PLGA-PEG nano-delivery system for epigenetic therapy

Naz, A., Cui, Y., Collins, C. J., Thompson, D. H. & Irudayaraj, J. M. K., Jun 1 2017, In : Biomedicine and Pharmacotherapy. 90, p. 586-597 12 p.

Research output: Contribution to journalArticle

Azacitidine
Ethylene Glycol
Micelles
Epigenomics
Nucleoside Transport Proteins

Prosperity to challenges: Recent approaches in SERS substrate fabrication

Ouyang, L., Ren, W., Zhu, L. & Irudayaraj, J. M. K., Mar 1 2017, In : Reviews in Analytical Chemistry. 36, 1

Research output: Contribution to journalArticle

Raman spectroscopy
Fabrication
Substrates
Molecules
Monitoring

Real-Time Multiplex Kinase Phosphorylation Sensors in Living Cells

Damayanti, N. P., Buno, K., Cui, Y., Voytik-Harbin, S. L., Pili, R., Freeman, J. & Irudayaraj, J. M. K., Aug 25 2017, In : ACS Sensors. 2, 8, p. 1225-1230 6 p.

Research output: Contribution to journalArticle

phosphorylation
Phosphorylation
Phosphotransferases
Cells
sensors

Single molecule Raman spectroscopic assay to detect transgene from GM plants

Kadam, U. S., Chavhan, R. L., Schulz, B. & Irudayaraj, J. M. K., Sep 1 2017, In : Analytical Biochemistry. 532, p. 60-63 4 p.

Research output: Contribution to journalArticle

Transgenes
Amplification
Raman spectroscopy
Assays
Contamination

Spin contrast of purcell-enhanced nitrogen-vacancy centers in diamonds

Bogdanov, S., Shalaginov, M. Y., Akimov, A. V., Lagutchev, A., Liu, J., Woods, D., Ferrera, M., Kapitanova, P., Belov, P., Irudayaraj, J. M. K., Boltasseva, A. & Shalaev, V. M., Jan 1 2017, CLEO: QELS_Fundamental Science, CLEO_QELS 2017. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F42-CLEO_QELS 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Diamond
Vacancies
Diamonds
Nitrogen
Photonics

Technical advances in global DNA methylation analysis in human cancers

Chowdhury, B., Cho, I. H. & Irudayaraj, J. M. K., Mar 1 2017, In : Journal of Biological Engineering. 11, 1, 10.

Research output: Contribution to journalReview article

DNA Methylation
5-Methylcytosine
Epigenomics
Neoplasms
Derivatives

Toxicological effects of trichloroethylene exposure on immune disorders

Ordaz, J. D., Damayanti, N. P. & Irudayaraj, J. M. K., Nov 2 2017, In : Immunopharmacology and Immunotoxicology. 39, 6, p. 305-317 13 p.

Research output: Contribution to journalReview article

Trichloroethylene
Immune System Diseases
Toxicology
Immune system
Immune System

Zinc oxide nanoparticles-induced reactive oxygen species promotes multimodal cyto- and epigenetic toxicity

Choudhury, S. R., Ordaz, J., Lo, C. L., Damayanti, N. P., Zhou, F. & Irudayaraj, J. M. K., Mar 1 2017, In : Toxicological Sciences. 156, 1, p. 261-274 14 p.

Research output: Contribution to journalArticle

Zinc Oxide
Epigenomics
Nanoparticles
Toxicity
Reactive Oxygen Species
2016

A study of alterations in DNA epigenetic modifications (5mC and 5hmC) and gene expression influenced by simulated microgravity in human lymphoblastoid cells

Chowdhury, B., Seetharam, A., Wang, Z., Liu, Y., Lossie, A. C., Thimmapuram, J. & Irudayaraj, J., Jan 1 2016, In : PloS one. 11, 1, e0147514.

Research output: Contribution to journalArticle

microgravity
Weightlessness
Microgravity
Epigenomics
Gene expression

CRISPR-dCas9 mediated TET1 targeting for selective DNA demethylation at BRCA1 promoter

Choudhury, S. R., Cui, Y., Lubecka, K., Stefanska, B. & Irudayaraj, J. M. K., Jan 1 2016, In : Oncotarget. 7, 29, p. 46545-46556 12 p.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Tumor Suppressor Genes
Epigenomics
DNA
Guide RNA

Epigenetic toxicity of trichloroethylene: A single-molecule perspective

Cui, Y., Choudhury, S. R. & Irudayaraj, J. M. K., Jan 1 2016, In : Toxicology Research. 5, 2, p. 641-650 10 p.

Research output: Contribution to journalArticle

Trichloroethylene
Epigenomics
Toxicity
Molecules
Heterochromatin

Kinase phosphorylation monitoring with i-motif DNA cross-linked SERS probes

Ren, W., Damayanti, N. P., Wang, X. & Irudayaraj, J. M. K., Jan 7 2016, In : Chemical Communications. 52, 2, p. 410-413 4 p.

Research output: Contribution to journalArticle

Phosphorylation
DNA
Phosphotransferases
Monitoring
Biosensors

Mitochondrial Dysfunction, Disruption of F-Actin Polymerization, and Transcriptomic Alterations in Zebrafish Larvae Exposed to Trichloroethylene

Wirbisky, S. E., Damayanti, N. P., Mahapatra, C. T., Sepúlveda, M. S., Irudayaraj, J. M. K. & Freeman, J. L., Feb 15 2016, In : Chemical Research in Toxicology. 29, 2, p. 169-179 11 p.

Research output: Contribution to journalArticle

Trichloroethylene
Zebrafish
Polymerization
Larva
Actins