Jessica Rutkoski

20112019
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Research Output 2011 2019

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Article
2019

1k-RiCA (1K-Rice Custom Amplicon) a novel genotyping amplicon-based SNP assay for genetics and breeding applications in rice

Arbelaez, J. D., Dwiyanti, M. S., Tandayu, E., Llantada, K., Jarana, A., Ignacio, J. C., Platten, J. D., Cobb, J., Rutkoski, J. E., Thomson, M. J. & Kretzschmar, T., Dec 1 2019, In : Rice. 12, 1, 55.

Research output: Contribution to journalArticle

Open Access
genotyping
rice
breeding
assay
assays

Estimation of realized rates of genetic gain and indicators for breeding program assessment

Rutkoski, J. E., May 1 2019, In : Crop Science. 59, 3, p. 981-993 13 p.

Research output: Contribution to journalArticle

Open Access
genetic improvement
breeding
breeding value
methodology
plant breeding

High-throughput phenotyping platforms enhance genomic selection for wheat grain yield across populations and cycles in early stage

Sun, J., Poland, J. A., Mondal, S., Crossa, J., Juliana, P., Singh, R. P., Rutkoski, J. E., Jannink, J. L., Crespo-Herrera, L., Velu, G., Huerta-Espino, J. & Sorrells, M. E., Jun 1 2019, In : Theoretical and Applied Genetics. 132, 6, p. 1705-1720 16 p.

Research output: Contribution to journalArticle

marker-assisted selection
Triticum
grain yield
phenotype
wheat

Hyperspectral reflectance-derived relationship matrices for genomic prediction of grain yield in wheat

Krause, M. R., González-Pérez, L., Crossa, J., Pérez-Rodríguez, P., Montesinos-López, O., Singh, R. P., Dreisigacker, S., Poland, J., Rutkoski, J., Sorrells, M., Gore, M. A. & Mondal, S., Jan 1 2019, In : G3: Genes, Genomes, Genetics. 9, 4, p. 1231-1247 17 p.

Research output: Contribution to journalArticle

Open Access
Pedigree
Triticum
Breeding
Bread
Biophysical Phenomena

Multivariate genomic selection and potential of rapid indirect selection with speed breeding in spring wheat

Watson, A., Hickey, L. T., Christopher, J., Rutkoski, J., Poland, J. & Hayes, B. J., Sep 1 2019, In : Crop Science. 59, 5, p. 1945-1959 15 p.

Research output: Contribution to journalArticle

spring wheat
marker-assisted selection
breeding
grain yield
flowering
2018

Combining high-throughput phenotyping and genomic information to increase prediction and selection accuracy in wheat breeding

Crain, J., Mondal, S., Rutkoski, J., Singh, R. P. & Poland, J., Mar 2018, In : Plant Genome. 11, 1, 170043.

Research output: Contribution to journalArticle

Open Access
Triticum
Breeding
genomics
phenotype
wheat

Genomic selection for grain yield and quality traits in durum wheat

Haile, J. K., N’Diaye, A., Clarke, F., Clarke, J., Knox, R., Rutkoski, J., Bassi, F. M. & Pozniak, C. J., Jun 1 2018, In : Molecular Breeding. 38, 6, 75.

Research output: Contribution to journalArticle

durum wheat
marker-assisted selection
Triticum
grain yield
Breeding

Role of modelling in international crop research: Overview and some case studies

Reynolds, M., Kropff, M., Crossa, J., Koo, J., Kruseman, G., Molero Milan, A., Rutkoski, J., Schulthess, U., Singh, B., Sonder, K., Tonnang, H. & Vadez, V., Dec 4 2018, In : Agronomy. 8, 12, 291.

Research output: Contribution to journalArticle

Open Access
case studies
crop management
crops
socioeconomics
limited resource farmers
2017

Application of geographically weighted regression to improve grain yield prediction from unmanned aerial system imagery

Haghighattalab, A., Crain, J., Mondal, S., Rutkoski, J., Singh, R. P. & Poland, J., Jan 1 2017, In : Crop Science. 57, 5, p. 2478-2489 12 p.

Research output: Contribution to journalArticle

grain yield
prediction
drought
wheat
crops

Comparison of models and whole-genome profiling approaches for genomic-enabled prediction of Septoria tritici blotch, Stagonospora nodorum blotch, and tan spot resistance in wheat

Juliana, P., Singh, R. P., Singh, P. K., Crossa, J., Rutkoski, J. E., Poland, J. A., Bergstrom, G. C. & Sorrells, M. E., Jan 1 2017, In : Plant Genome. 10, 2

Research output: Contribution to journalArticle

Open Access
Leptosphaeria nodorum
Mycosphaerella graminicola
Pedigree
Least-Squares Analysis
Seedlings

Genomic and pedigree-based prediction for leaf, stem, and stripe rust resistance in wheat

Juliana, P., Singh, R. P., Singh, P. K., Crossa, J., Huerta-Espino, J., Lan, C., Bhavani, S., Rutkoski, J. E., Poland, J. A., Bergstrom, G. C. & Sorrells, M. E., Jul 1 2017, In : Theoretical and Applied Genetics. 130, 7, p. 1415-1430 16 p.

Research output: Contribution to journalArticle

Open Access
stem rust
leaf rust
Pedigree
pedigree
Triticum

Multitrait, random regression, or simple repeatability model in high-throughput phenotyping data improve genomic prediction for wheat grain yield

Sun, J., Rutkoski, J. E., Poland, J. A., Crossa, J., Jannink, J. L. & Sorrells, M. E., Jan 1 2017, In : Plant Genome. 10, 2

Research output: Contribution to journalArticle

Open Access
Pedigree
repeatability
Triticum
grain yield
genomics

Predicting grain yield using canopy hyperspectral reflectance in wheat breeding data

Montesinos-López, O. A., Montesinos-López, A., Crossa, J., los Campos, G., Alvarado, G., Suchismita, M., Rutkoski, J., González-Pérez, L. & Burgueño, J., Jan 3 2017, In : Plant Methods. 13, 1, 4.

Research output: Contribution to journalArticle

Open Access
Least-Squares Analysis
Triticum
reflectance
Breeding
grain yield

Single-step genomic and pedigree genotype × environment interaction models for predicting wheat lines in international environments

Pérez-Rodríguez, P., Crossa, J., Rutkoski, J., Poland, J., Singh, R., Legarra, A., Autrique, E., De los Campos, G., Burgueño, J. & Dreisigacker, S., Jan 1 2017, In : Plant Genome. 10, 2

Research output: Contribution to journalArticle

Open Access
genotype-environment interaction
Pedigree
pedigree
Triticum
Genotype
2016

Advances and Challenges in Genomic Selection for Disease Resistance

Poland, J. & Rutkoski, J., Aug 4 2016, In : Annual Review of Phytopathology. 54, p. 79-98 20 p.

Research output: Contribution to journalArticle

marker-assisted selection
disease resistance
breeding
genome
agronomic traits

A genomic Bayesian multi-trait and multi-environment model

Montesinos-López, O. A., Montesinos-López, A., Crossa, J., Toledo, F. H., Pérez-Hernández, O., Eskridge, K. M. & Rutkoski, J., Jan 1 2016, In : G3: Genes, Genomes, Genetics. 6, 9, p. 2725-2774 50 p.

Research output: Contribution to journalArticle

Open Access
Genotype
Markov Chains
Bayes Theorem
Software
Genome

Application of unmanned aerial systems for high throughput phenotyping of large wheat breeding nurseries

Haghighattalab, A., González Pérez, L., Mondal, S., Singh, D., Schinstock, D., Rutkoski, J., Ortiz-Monasterio, I., Singh, R. P., Goodin, D. & Poland, J., Jun 24 2016, In : Plant Methods. 12, 1, 35.

Research output: Contribution to journalArticle

Open Access
Nurseries
Triticum
Breeding
spectroradiometers
Imagery (Psychotherapy)

Canopy temperature and vegetation indices from high-throughput phenotyping improve accuracy of pedigree and genomic selection for grain yield in wheat

Rutkoski, J., Poland, J., Mondal, S., Autrique, E., Pérez, L. G., Crossa, J., Reynolds, M. & Singh, R., Jan 1 2016, In : G3: Genes, Genomes, Genetics. 6, 9, p. 2799-2808 10 p.

Research output: Contribution to journalArticle

Open Access
Pedigree
Triticum
Temperature
Breeding
Phenotype

Disease Impact on Wheat Yield Potential and Prospects of Genetic Control

Singh, R. P., Singh, P. K., Rutkoski, J., Hodson, D. P., He, X., Jørgensen, L. N., Hovmøller, M. S. & Huerta-Espino, J., Aug 4 2016, In : Annual Review of Phytopathology. 54, p. 303-322 20 p.

Research output: Contribution to journalArticle

genetic resistance
wheat
fungicides
production technology
leaf spot
2015

A genomic selection index applied to simulated and real data

Ceron-Rojas, J. J., Crossa, J., Arief, V. N., Basford, K., Rutkoski, J., Jarquín, D., Alvarado, G., Beyene, Y., Semagn, K. & DeLacy, I., Jan 1 2015, In : G3: Genes, Genomes, Genetics. 5, 10, p. 2155-2164 10 p.

Research output: Contribution to journalArticle

Open Access
Breeding
Parents
Population
Datasets

Efficient use of historical data for genomic selection: A case study of stem rust resistance in wheat

Rutkoski, J., Singh, R. P., Huerta-Espino, J., Bhavani, S., Poland, J., Jannink, J. L. & Sorrells, M. E., Jan 1 2015, In : Plant Genome. 8, 1, p. 1-10 10 p.

Research output: Contribution to journalArticle

Open Access
stem rust
marker-assisted selection
Triticum
case studies
wheat

Genetic gain from phenotypic and genomic selection for quantitative resistance to stem rust of wheat

Rutkoski, J., Singh, R. P., Huerta-Espino, J., Bhavani, S., Poland, J., Jannink, J. L. & Sorrells, M. E., Jan 1 2015, In : Plant Genome. 8, 2

Research output: Contribution to journalArticle

Open Access
stem rust
marker-assisted selection
genetic improvement
Triticum
wheat

Genome-wide association mapping for leaf tip necrosis and pseudo-black chaff in relation to durable rust resistance in wheat

Juliana, P., Rutkoski, J. E., Poland, J. A., Singh, R. P., Murugasamy, S., Natesan, S., Barbier, H. & Sorrells, M. E., Jan 1 2015, In : Plant Genome. 8, 2

Research output: Contribution to journalArticle

Open Access
chaff
Triticum
chromosome mapping
necrosis
Necrosis
2014

Genomic selection for quantitative adult plant stem rust resistance in wheat

Rutkoski, J. E., Poland, J. A., Singh, R. P., Huerta-Espino, J., Bhavani, S., Barbier, H., Rouse, M. N., Jannink, J. L. & Sorrells, M. E., Nov 1 2014, In : Plant Genome. 7, 3

Research output: Contribution to journalArticle

Open Access
Plant Stems
stem rust
mature plants
marker-assisted selection
Triticum
2013

Impact of Marker Ascertainment Bias on Genomic Selection Accuracy and Estimates of Genetic Diversity

Heslot, N., Rutkoski, J., Poland, J., Jannink, J. L. & Sorrells, M. E., Sep 5 2013, In : PloS one. 8, 9, e74612.

Research output: Contribution to journalArticle

Open Access
marker-assisted selection
genotyping
Technology
genetic variation
Triticum

Imputation of unordered markers and the impact on genomic selection accuracy

Rutkoski, J. E., Poland, J., Jannink, J. L. & Sorrells, M. E., Mar 2013, In : G3: Genes, Genomes, Genetics. 3, 3, p. 427-439 13 p.

Research output: Contribution to journalArticle

Open Access
Genome
Linkage Disequilibrium
Breeding
Forests
Datasets
2012

Evaluation of genomic prediction methods for fusarium head blight resistance in wheat

Rutkoski, J., Benson, J., Jia, Y., Brown-Guedira, G., Jannink, J. L. & Sorrells, M., Dec 1 2012, In : Plant Genome. 5, 2, p. 51-61 11 p.

Research output: Contribution to journalArticle

Open Access
Fusarium head blight
Fusarium
Triticum
deoxynivalenol
genomics

Genomic selection in wheat breeding using genotyping-by-sequencing

Poland, J., Endelman, J., Dawson, J., Rutkoski, J., Wu, S., Manes, Y., Dreisigacker, S., Crossa, J., Sánchez-Villeda, H., Sorrells, M. & Jannink, J. L., Dec 1 2012, In : Plant Genome. 5, 3, p. 103-113 11 p.

Research output: Contribution to journalArticle

Open Access
marker-assisted selection
genotyping
Triticum
Breeding
breeding value
2011

Association mapping and gene-gene interaction for stem rust resistance in CIMMYT spring wheat germplasm

Yu, L. X., Lorenz, A., Rutkoski, J., Singh, R. P., Bhavani, S., Huerta-Espino, J. & Sorrells, M. E., Dec 1 2011, In : Theoretical and Applied Genetics. 123, 8, p. 1257-1268 12 p.

Research output: Contribution to journalArticle

stem rust
gene interaction
Chromosome Mapping
spring wheat
Triticum

Genomic selection for durable stem rust resistance in wheat

Rutkoski, J. E., Heffner, E. L. & Sorrells, M. E., May 1 2011, In : Euphytica. 179, 1, p. 161-173 13 p.

Research output: Contribution to journalArticle

stem rust
mature plants
marker-assisted selection
Triticum
wheat