Jeffrey F Gardner

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Research Output

2017

Resolution of mismatched overlap Holliday junction intermediates by the tyrosine recombinase IntDOT

Ringwald, K., Yoneji, S. & Gardner, J., May 1 2017, In : Journal of bacteriology. 199, 10, e00873-16.

Research output: Contribution to journalArticle

Open Access
2016

The N-terminus of IntDOT forms hydrophobic interactions during Holliday Junction resolution

Kolakowski, A. J. & Gardner, J. F., Sep 1 2016, In : Plasmid. 87-88, p. 10-16 7 p.

Research output: Contribution to journalArticle

2015
Open Access

The integration and excision of CTnDOT

Wood, M. M. & Gardner, J. F., 2015, In : Microbiology Spectrum. 3, 2, MDNA3-0020-2014.

Research output: Contribution to journalArticle

The Xis2d protein of CTnDOT binds to the intergenic region between the mob and tra operons

Hopp, C. M., Gardner, J. F. & Salyers, A. A., Sep 1 2015, In : Plasmid. 81, p. 63-71 9 p.

Research output: Contribution to journalArticle

2013

IntDOT Interactions with Core Sites during Integrative Recombination

Laprise, J., Yoneji, S. & Gardner, J. F., May 1 2013, In : Journal of bacteriology. 195, 9, p. 1883-1891 9 p.

Research output: Contribution to journalArticle

Interactions of NBU1 IntN1 and Orf2x proteins with attachment site DNA

Wood, M. M., Rajeev, L. & Gardner, J. F., Dec 1 2013, In : Journal of bacteriology. 195, 24, p. 5516-5525 10 p.

Research output: Contribution to journalArticle

Interactions of the excision proteins of CTnDOT in the attR intasome

Keeton, C. M., Hopp, C. M., Yoneji, S. & Gardner, J. F., Sep 1 2013, In : Plasmid. 70, 2, p. 190-200 11 p.

Research output: Contribution to journalArticle

The excision proteins of CTnDOT positively regulate the transfer operon

Keeton, C. M., Park, J., Wang, G. R., Hopp, C. M., Shoemaker, N. B., Gardner, J. F. & Salyers, A. A., Mar 1 2013, In : Plasmid. 69, 2, p. 172-179 8 p.

Research output: Contribution to journalArticle

2012

Roles of Exc protein and DNA homology in the CTnDOT excision reaction

Keeton, C. M. & Gardner, J. F., Jul 1 2012, In : Journal of bacteriology. 194, 13, p. 3368-3376 9 p.

Research output: Contribution to journalArticle

2011

Resolution of holliday junction recombination intermediates by wild-type and mutant IntDOT proteins

Kim, S. & Gardner, J. F., Mar 1 2011, In : Journal of bacteriology. 193, 6, p. 1351-1358 8 p.

Research output: Contribution to journalArticle

2010

CTnDOT integrase interactions with attachment site DNA and control of directionality of the recombination reaction

Wood, M. M., DiChiara, J. M., Yoneji, S. & Gardner, J. F., Aug 1 2010, In : Journal of bacteriology. 192, 15, p. 3934-3943 10 p.

Research output: Contribution to journalArticle

Structure-function analysis of IntDOT

Kim, S., Swalla, B. M. & Gardner, J. F., Jan 1 2010, In : Journal of bacteriology. 192, 2, p. 575-586 12 p.

Research output: Contribution to journalArticle

2009

Challenging a paradigm: The role of DNA homology in tyrosine recombinase reactions

Rajeev, L., Malanowska, K. & Gardner, J. F., Jun 2009, In : Microbiology and Molecular Biology Reviews. 73, 2, p. 300-309 10 p.

Research output: Contribution to journalReview article

Homology-dependent interactions determine the order of strand exchange by IntDOT recombinase

Laprise, J., Yoneji, S. & Gardner, J. F., Dec 1 2009, In : Nucleic acids research. 38, 3, p. 958-969 12 p., gkp927.

Research output: Contribution to journalArticle

Mutational analysis and homology-based modeling of the intDOT core-binding domain

Malanowska, K., Cioni, J., Swalla, B. M., Salyers, A. & Gardner, J. F., Apr 1 2009, In : Journal of bacteriology. 191, 7, p. 2330-2339 10 p.

Research output: Contribution to journalArticle

2008

Purification and characterization of bacteriophage P22 Xis protein

Mattis, A. N., Gumport, R. I. & Gardner, J. F., Sep 1 2008, In : Journal of bacteriology. 190, 17, p. 5781-5796 16 p.

Research output: Contribution to journalArticle

Structural prediction and mutational analysis of the Gifsy-1 Xis protein

Flanigan, A. & Gardner, J., Dec 24 2008, In : BMC microbiology. 8, 199.

Research output: Contribution to journalArticle

2007

CTnDOT integrase performs ordered homology-dependent and homology-independent strand exchanges

Malanowska, K., Yoneji, S., Salyers, A. A. & Gardner, J. F., Sep 1 2007, In : Nucleic acids research. 35, 17, p. 5861-5873 13 p.

Research output: Contribution to journalArticle

Dissecting Nucleic Acid-Protein Interactions Using Challenge Phage

Maloy, S. R. & Gardner, J., Mar 12 2007, In : Methods in enzymology. 421, p. 227-249 23 p.

Research output: Contribution to journalReview article

IntDOT interactions with core- and arm-type sites of the conjugative transposon CTnDOT

DiChiara, J. M., Mattis, A. N. & Gardner, J. F., Apr 1 2007, In : Journal of bacteriology. 189, 7, p. 2692-2701 10 p.

Research output: Contribution to journalArticle

Integration site selection by the bacteroides conjugative transposon CTnBST

Song, B., Shoemaker, N. B., Gardner, J. F. & Salyers, A. A., Sep 1 2007, In : Journal of bacteriology. 189, 18, p. 6594-6601 8 p.

Research output: Contribution to journalArticle

Interaction of the Gifsy-1 Xis protein with the Gifsy-1 attP sequence

Flanigan, A. & Gardner, J. F., Sep 1 2007, In : Journal of bacteriology. 189, 17, p. 6303-6311 9 p.

Research output: Contribution to journalArticle

The Bacteroides NBU1 integrase performs a homology-independent strand exchange to form a holliday junction intermediate

Rajeev, L., Segall, A. & Gardner, J., Oct 26 2007, In : Journal of Biological Chemistry. 282, 43, p. 31228-31237 10 p.

Research output: Contribution to journalArticle

2006

Characterization of a conjugative transposon integrase, IntDOT

Malanowska, K., Salyers, A. A. & Gardner, J. F., Jun 1 2006, In : Molecular Microbiology. 60, 5, p. 1228-1240 13 p.

Research output: Contribution to journalArticle

Characterization of the integrase of NBU1, a Bacteroides mobilizable transposon

Rajeev, L., Salyers, A. A. & Gardner, J. F., Aug 1 2006, In : Molecular Microbiology. 61, 4, p. 978-990 13 p.

Research output: Contribution to journalArticle

NBU1 integrase: Evidence for an altered recombination mechanism

Schmidt, J. W., Rajeev, L., Salyers, A. A. & Gardner, J. F., Apr 1 2006, In : Molecular Microbiology. 60, 1, p. 152-164 13 p.

Research output: Contribution to journalArticle

2005

In vitro analysis of sequence requirements for the excision reaction of the Bacteroides conjugative transposon, CTnDOT

DiChiara, J. M., Salyers, A. A. & Gardner, J., May 1 2005, In : Molecular Microbiology. 56, 4, p. 1035-1048 14 p.

Research output: Contribution to journalArticle

Regulation of excision genes of the Bacteroides conjugative transposon CTnDOT

Moon, K., Shoemaker, N. B., Gardner, J. F. & Salyers, A. A., Aug 2005, In : Journal of bacteriology. 187, 16, p. 5732-5741 10 p.

Research output: Contribution to journalArticle

2004

Factors required in vitro for excision of the Bacteroides conjugative transposon, CTnDOT

Sutanto, Y., DiChiara, J. M., Shoemaker, N. B., Gardner, J. F. & Salyers, A. A., Sep 1 2004, In : Plasmid. 52, 2, p. 119-130 12 p.

Research output: Contribution to journalArticle

2003

Consevation of structure and function among tyrosine recombinases: Homology-based modeling of the lambda integrase core-binding domain

Swalla, B. M., Gumport, R. I. & Gardner, J. F., Feb 1 2003, In : Nucleic acids research. 31, 3, p. 805-818 14 p.

Research output: Contribution to journalReview article

Integration host factor: Putting a twist on protein-DNA recognition

Lynch, T. W., Read, E. K., Mattis, A. N., Gardner, J. F. & Rice, P. A., Jul 11 2003, In : Journal of Molecular Biology. 330, 3, p. 493-502 10 p.

Research output: Contribution to journalArticle

The molecular basis of co-operative DNA binding between lambda integrase and excisionase

Swalla, B. M., Hee Cho, E., Gumport, R. I. & Gardner, J. F., Oct 1 2003, In : Molecular Microbiology. 50, 1, p. 89-99 11 p.

Research output: Contribution to journalArticle

2002

Characterization of Exc, a novel protein required for the excision of Bacteroides conjugative transposon

Sutanto, Y., Shoemaker, N. B., Gardner, J. F. & Salyers, A. A., Jan 1 2002, In : Molecular Microbiology. 46, 5, p. 1239-1246 8 p.

Research output: Contribution to journalArticle

Development of an in vitro integration assay for the bacteroides conjugative transposon CTnDOT

Cheng, Q., Wesslund, N., Shoemaker, N. B., Salyers, A. A. & Gardner, J. F., Sep 2002, In : Journal of bacteriology. 184, 17, p. 4829-4837 9 p.

Research output: Contribution to journalArticle

Interactions between integrase and excisionase in the phage lambda excisive nucleoprotein complex

Cho, E. H., Gumport, R. I. & Gardner, J. F., Sep 1 2002, In : Journal of bacteriology. 184, 18, p. 5200-5203 4 p.

Research output: Contribution to journalArticle

Regulation of site-specific recombination by the C-terminus of λ integrase

Kazmierczak, R. A., Swalla, B. M., Burgin, A. B., Gumport, R. I. & Gardner, J. E., Dec 1 2002, In : Nucleic acids research. 30, 23, p. 5193-5204 12 p.

Research output: Contribution to journalReview article

2001

Identification of genes required for excision of CTnDOT, a Bacteroides conjugative transposon

Cheng, Q., Sutanto, Y., Shoemaker, N. B., Gardner, J. F. & Salyers, A. A., Jan 1 2001, In : Molecular Microbiology. 41, 3, p. 625-632 8 p.

Research output: Contribution to journalArticle

2000

Characterization of bacteriophage lambda excisionase mutants defective in DNA binding

Eun Hee Cho, H. C., Alcaraz R., J., Gumport, R. I. & Gardner, J. F., 2000, In : Journal of bacteriology. 182, 20, p. 5807-5812 6 p.

Research output: Contribution to journalArticle

Integration and excision of a Bacteroides conjugative transposon, CTnDOT

Cheng, Q., Paszkiet, B. J., Shoemaker, N. B., Gardner, J. F. & Salyers, A. A., Jul 2000, In : Journal of bacteriology. 182, 14, p. 4035-4043 9 p.

Research output: Contribution to journalArticle

Specificity determinants for bacteriophage Hong Kong 022 integrase: Analysis of mutants with relaxed core-binding specificities

Cheng, Q., Swalla, B. M., Beck, M., Alcaraz, R., Gumport, R. I. & Gardner, J. F., May 10 2000, In : Molecular Microbiology. 36, 2, p. 424-436 13 p.

Research output: Contribution to journalArticle

1999

Analysis of estrogen response element binding by genetically selected steroid receptor DNA binding domain mutants exhibiting altered specificity and enhanced affinity

Chusacultanachai, S., Glenn, K. A., Rodriguez, A. O., Read, E. K., Gardner, J. F., Katzenellenbogen, B. S. & Shapiro, D. J., Aug 13 1999, In : Journal of Biological Chemistry. 274, 33, p. 23591-23598 8 p.

Research output: Contribution to journalArticle

Site-specific recombination of bacteriophage P22 does not require integration host factor

Cho, E. H., Nam, C. E., Alcaraz, R. & Gardner, J. F., Jul 1999, In : Journal of bacteriology. 181, 14, p. 4245-4249 5 p.

Research output: Contribution to journalArticle

Open Access
1998

Defining the structural and functional roles of the carboxyl region of the bacteriophage lambda excisionase (Xis) protein

Wu, Z., Gumport, R. I. & Gardner, J. F., Aug 28 1998, In : Journal of Molecular Biology. 281, 4, p. 651-661 11 p.

Research output: Contribution to journalArticle

1997

Direct genetic selection of two classes of R17/MS2 coat proteins with altered capsid assembly properties and expanded RNA-binding activities

Wang, S., True, H. L., Seitz, E. M., Bennett, K. A., Fouts, D. E., Gardner, J. F. & Celander, D. W., Apr 15 1997, In : Nucleic acids research. 25, 8, p. 1649-1657 9 p.

Research output: Contribution to journalArticle

Genetic analysis of second-site revertants of bacteriophage λ integrase mutants

Wu, Z., Gumport, R. I. & Gardner, J. F., Jun 1997, In : Journal of bacteriology. 179, 12, p. 4030-4038 9 p.

Research output: Contribution to journalArticle

Open Access

Mutational analysis of protein binding sites involved in formation of the Bacteriophage λ attL complex

MacWilliams, M., Gumport, R. I. & Gardner, J. F., 1997, In : Journal of bacteriology. 179, 4, p. 1059-1167 109 p.

Research output: Contribution to journalArticle

Open Access
1996

Examining the contribution of a dA+dT element to the conformation of Escherichia coli integration host factor-DNA complexes

Hales, L. M., Gumport, R. I. & Gardner, J. F., Jan 1 1996, In : Nucleic acids research. 24, 9, p. 1780-1786 7 p.

Research output: Contribution to journalArticle

Genetic analysis of the bacteriophage λ attL nucleoprotein complex

MacWilliams, M. P., Gumport, R. I. & Gardner, J. F., Jul 30 1996, In : Genetics. 143, 3, p. 1069-1079 11 p.

Research output: Contribution to journalArticle