1989 …2018
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Research Output 1989 2018

Review article

Service-oriented environments for dynamically interacting with mesoscale weather

Droegemeier, K. K., Brewster, K., Xue, M., Weber, D., Gannon, D., Plale, B., Reed, D., Ramakrishnan, L., Alameda, J., Wilhelmson, R., Baltzer, T., Domenico, B., Murray, D., Ramamurthy, M., Wilson, A., Clark, R., Yalda, S., Graves, S., Ramachandran, R., Rushing, J. & 2 others, Joseph, E. & Morris, V., Nov 1 2005, In : Computing in Science and Engineering. 7, 6, p. 12-27 16 p.

Research output: Contribution to journalReview article

Monitoring
Scheduling
Paper

Ensemble broker service oriented architecture for LEAD

Alameda, J., Hampton, S., Jewett, B., Rossi, A. & Wilhelmson, B., Dec 1 2006.

Research output: Contribution to conferencePaper

Flavors
Service oriented architecture (SOA)
Engines
Grid computing
engine

Lead at the Unidata Workshop: Demonstrating democratization of NWP capabilities

Baltzer, T., Wilson, A., Ramamurthy, M., Marru, S., Christie, M., Gannon, D., Rossi, A., Hampton, S., Alameda, J. & Droegemeier, K., Dec 1 2007.

Research output: Contribution to conferencePaper

democratization
Lead

Lead learning communities

Yalda, S., Clark, R., Joseph, E., Alameda, J., Baltzer, T., Droegemeier, K., Bender, D. & Yarnell, W., Dec 1 2005, p. 1297-1299. 3 p.

Research output: Contribution to conferencePaper

Lead

Lead learning communities

Yalda, S., Clark, R., Joseph, E., Alameda, J., Baltzer, T., Droegemeier, K., Bender, D. & Yarnell, W., Dec 1 2005, p. 3323-3325. 3 p.

Research output: Contribution to conferencePaper

Lead

SIEGE: A graphical user interface to enable management of large numbers of weather simulations

Alameda, J., Wilhelmson, R., Rossi, A., Hampton, S., Jewett, B., Baltzer, T. & Wilson, A., Dec 1 2007.

Research output: Contribution to conferencePaper

Graphical user interfaces
weather
simulation
Conference contribution

An architecture for automatic deployment of brown dog services at scale into diverse computing infrastructures

Padhy, S., Alameda, J., Kooper, R., Liu, R., Satheesan, S. P., Zharnitsky, I., Jansen, G., Dietze, M. C., Kumar, P., Lee, J. S., Marciano, R., Marini, L., Minsker, B. S., Navarro, C., Slavenas, M., Sullivan, W. C. & McHenry, K. G., Jul 17 2016, Proceedings of XSEDE 2016: Diversity, Big Data, and Science at Scale. Association for Computing Machinery, a33. (ACM International Conference Proceeding Series; vol. 17-21-July-2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Environmental engineering
Information science
Social sciences
Information use
Ecology

An authorization framework for a grid based component architecture

Ramakrishnan, L., Rehn, H., Alameda, J., Ananthakrishnan, R., Govindaraju, M., Slominski, A., Connelly, K., Welch, V., Gannon, D., Bramley, R. & Hampton, S., Dec 1 2002, Grid Computing, GRID 2002 - Third International Workshop, Proceedings. p. 169-180 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2536 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Authorization
Authentication
Grid
Component-based Systems
Specifications

An overview of the XSEDE extended collaborative support program

Wilkins-Diehr, N., Sanielevici, S., Alameda, J., Cazes, J., Crosby, L., Pierce, M. & Roskies, R., Jan 1 2016, High Performance Computer Applications - 6th International Conference, ISUM 2015, Revised Selected Papers. Gitler, I. & Klapp, J. (eds.). Springer-Verlag, p. 3-13 11 p. (Communications in Computer and Information Science; vol. 595).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Extremes
Transform
Engineering
Engagement
Community

Architecting an autograder for parallel code

Carbunescu, R., Devarakonda, A., Demmel, J., Gordon, S., Alameda, J. & Mehringer, S., Jan 1 2014, Proceedings of the XSEDE 2014 Conference: Engaging Communities. Association for Computing Machinery, 68. (ACM International Conference Proceeding Series).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Parallel processing systems
Computer science

Brown dog: Making the digital world a better place, a few files at a time

Satheesan, S. P., Galewsky, B., Lee, J. S., Christopher, M., Zhang, B., Alameda, J., Jansen, G., Marciano, R., Schmidt, A. R., Zhao, Y., Bradley, S., Kooper, R., Marini, L., Slavenas, M., Zharnitsky, I., Dietze, M., Kumar, P., Minsker, B. S., Sullivan, W. C. & McHenry, K. G., Jul 22 2018, Practice and Experience in Advanced Research Computing 2018: Seamless Creativity, PEARC 2018. Association for Computing Machinery, a38. (ACM International Conference Proceeding Series).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer programming languages
Information management
Scalability

Brown Dog: Leveraging everything towards autocuration

Padhy, S., Jansen, G., Alameda, J., Black, E., Diesendruck, L., Dietze, M., Kumar, P., Kooper, R., Lee, J. S., Liu, R., Marciano, R., Marini, L., Mattson, D., Minsker, B., Navarro, C., Slavenas, M., Sullivan, W. C., Votava, J., Zharnitsky, I. & McHenry, K. G., Dec 22 2015, Proceedings - 2015 IEEE International Conference on Big Data, IEEE Big Data 2015. Luo, F., Ogan, K., Zaki, M. J., Haas, L., Ooi, B. C., Kumar, V., Rachuri, S., Pyne, S., Ho, H., Hu, X., Yu, S., Hsiao, M. H-I. & Li, J. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 493-500 8 p. 7363791. (Proceedings - 2015 IEEE International Conference on Big Data, IEEE Big Data 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Application programming interfaces (API)
Scalability
Big data

Grouping game players using parallelized K-Means on supercomputers

Cai, Y. D., Ratan, R., Shen, C. & Alameda, J., Jul 26 2015, Proceedings of the XSEDE 2015 Conference: Scientific Advancements Enabled by Enhanced Cyberinfrastructure. Association for Computing Machinery, a10. (ACM International Conference Proceeding Series; vol. 2015-July).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Supercomputers
Processing

On the use of services to support numerical weather prediction

Alameda, J., Rossi, A. L. & Hampton, S., Dec 3 2007, Grid-Based Problem Solving Environments: IFIP TC2/ WG 2.5 Working Conference on Grid-Based Problem Solving Environments: Implications for Development and Deployment of Numerical Software. Gaffney, P. W. & Pool, J. C. T. (eds.). p. 339-348 10 p. (IFIP International Federation for Information Processing; vol. 239).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Weather
Prediction
Problem solving
Metadata
Shell

Providing a supported online course on parallel computing

Gordon, S. I., Demmel, J., Mehringer, S., Alameda, J. & Carbunescu, R., Aug 26 2013, Proceedings of the XSEDE 2013 Conference: Gateway to Discovery. 60. (ACM International Conference Proceeding Series).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Parallel processing systems
Students
Curricula

The Eclipse parallel tools platform: Toward an integrated development environment for XSEDE resources

Alameda, J., Spear, W., Overbey, J. L., Huck, K., Watson, G. R. & Tibbitts, B., Aug 29 2012, Proceedings of the XSEDE12 Conference: Bridging from the eXtreme to the Campus and Beyond. (ACM International Conference Proceeding Series).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Sun
Authentication
Engines
Monitoring

XSEDE training: Achieving access and inclusion

Akli, L., Madrid, M., Alameda, J., Rivera, L. & Gordon, S. I., Jul 17 2016, Proceedings of XSEDE 2016: Diversity, Big Data, and Science at Scale. Association for Computing Machinery, a55. (ACM International Conference Proceeding Series; vol. 17-21-July-2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Lead
Education
Technical presentations
Ecosystems
Students
Conference article

MEAD (A Modeling Environment for Atmospheric Discovery)

Wilhelmson, R., Alameda, J., Droegemeier, K., Folk, M., Fowler, R., Gannon, D., Graves, S., Haidvogel, D., Husbands, P., Isbell, C. L., Weber, D., Woodward, P., York, B. W., Anderson, S., Jewett, B., Moore, C., Nolan, D., Porter, D., Semeraro, D. & Tanner, S., Jun 1 2004, In : Bulletin of the American Meteorological Society. p. 913-916 4 p.

Research output: Contribution to journalConference article

modeling
data mining
flow modeling
data management
hurricane
Article

Active management of scientific data

Plale, B., Gannon, D., Alameda, J., Wilhelmson, B., Hampton, S., Rossi, A. & Droegemeier, K., Jan 1 2005, In : IEEE Internet Computing. 9, 1, p. 27-34 8 p.

Research output: Contribution to journalArticle

Meteorology
Metadata
Information management
Web services
Sensors

Building Grid portal applications from a Web service component architecture

Gannon, D., Alameda, J., Chipara, O., Christie, M., Dukle, V., Fang, L., Farrellee, M., Kandaswamy, G., Kodeboyina, D., Krishnan, S., Moad, C., Pierce, M., Plale, B., Rossi, A., Simmhan, Y., Sarangi, A., Slominski, A., Shirasuna, S. & Thomas, T., Mar 1 2005, In : Proceedings of the IEEE. 93, 3, p. 551-562 12 p.

Research output: Contribution to journalArticle

Web services
Industrial plants
User interfaces

Coupled Mesoscale - Continuum Simulations of Copper Electrodeposition in a Trench

Drews, T. O., Webb, E. G., Ma, D. L., Alameda, J., Braatz, R. D. & Alkire, R. C., Jan 1 2004, In : AIChE Journal. 50, 1, p. 226-240 15 p.

Research output: Contribution to journalArticle

Electroplating
Electrodeposition
Copper
Surface phenomena
Boundary layers

Dextran magnetite as a liver contrast agent

Magin, R. L., Bacic, G., Niesman, M. R., Alameda, J., Wright, S. M. & Swartz, H. M., Jul 1991, In : Magnetic Resonance in Medicine. 20, 1, p. 1-16 16 p.

Research output: Contribution to journalArticle

Ferrosoferric Oxide
Dextrans
Contrast Media
Liver
Spleen

Distributed collaboration for engineering and scientific applications implemented in Habanero, a Java-based environment

Driggers, B., Alameda, J. & Bishop, K., Nov 1997, In : Concurrency Practice and Experience. 9, 11, p. 1269-1277 9 p.

Research output: Contribution to journalArticle

UNIX
Parallel algorithms
Partial differential equations
Interfaces (computer)
Mathematical models

Multiscale simulations of copper electrodeposition onto a resistive substrate

Drews, T. O., Krishnan, S., Alameda, J. C., Gannon, D., Braatz, R. D. & Alkire, R. C., Jan 2005, In : IBM Journal of Research and Development. 49, 1, p. 49-63 15 p.

Research output: Contribution to journalArticle

Electrodeposition
Seed
Copper
Substrates
Surface roughness

NMR study of water exchange across the hepatocyte membrane

Bacic, G., Alameda, J., Iannone, A., Magin, R. L. & Swartz, H. M., Jan 1 1989, In : Magnetic Resonance Imaging. 7, 4, p. 411-416 6 p.

Research output: Contribution to journalArticle

Hepatocytes
Nuclear magnetic resonance
Membranes
Water
Liver

The Open Grid Computing Environments collaboration: Portlets and services for science gateways

Alameda, J., Christie, M., Fox, G., Futrelle, J., Gannon, D., Hategan, M., Kandaswamy, G., Von Laszewski, G., Nacar, M. A., Pierce, M., Roberts, E., Severance, C. & Thomas, M., Apr 25 2007, In : Concurrency Computation Practice and Experience. 19, 6, p. 921-942 22 p.

Research output: Contribution to journalArticle

Grid computing
Gateway
Grid Computing
Web services
Grid

The XCAT science portal

Krishnan, S., Bramley, R., Gannon, D., Ananthakrishnan, R., Govindaraju, M., Slominski, A., Simmhan, Y., Alameda, J., Alkire, R. C., Drews, T. & Webb, E., Jan 1 2002, In : Scientific Programming. 10, 4, p. 303-317 15 p.

Research output: Contribution to journalArticle

Servers
Computer workstations
Launching
World Wide Web
Websites

Three‐Dimensional NMR microscopy of rat spleen and liver

Zhou, X., Magin, R. L., Alameda, J., Reynolds, H. A. & Lauterbur, P. C., Jul 1993, In : Magnetic Resonance in Medicine. 30, 1, p. 92-97 6 p.

Research output: Contribution to journalArticle

Microscopy
Spleen
Contrast Media
Liver
Ferrosoferric Oxide