Idoia Ochoa-Alvarez

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Article
2020

GABAC: An arithmetic coding solution for genomic data

Voges, J., Paridaens, T., Müntefering, F., Mainzer, L. S., Bliss, B., Yang, M., Ochoa, I., Fostier, J., Ostermann, J., Hernaez, M. & Hancock, J., Apr 1 2020, In : Bioinformatics. 36, 7, p. 2275-2277 3 p.

Research output: Contribution to journalArticle

Open Access

VEF: A variant filtering tool based on ensemble methods

Zhang, C. & Ochoa, I., Apr 15 2020, In : Bioinformatics. 36, 8, p. 2328-2336 9 p.

Research output: Contribution to journalArticle

2019

Denoising of Aligned Genomic Data

Fischer-Hwang, I., Ochoa, I., Weissman, T. & Hernaez, M., Dec 1 2019, In : Scientific reports. 9, 1, 15067.

Research output: Contribution to journalArticle

Open Access

MassComp, a lossless compressor for mass spectrometry data

Yang, R., Chen, X. & Ochoa, I., Jul 1 2019, In : BMC bioinformatics. 20, 1, 368.

Research output: Contribution to journalArticle

Open Access

SPRING: A next-generation compressor for FASTQ data

Chandak, S., Tatwawadi, K., Ochoa, I., Hernaez, M. & Weissman, T., Aug 1 2019, In : Bioinformatics. 35, 15, p. 2674-2676 3 p., bty1015.

Research output: Contribution to journalArticle

Open Access
2018

FaStore: A space-saving solution for raw sequencing data

Roguski, L., Ochoa, I., Hernaez, M. & Deorowicz, S., Jan 1 2018, In : Bioinformatics. 34, 16, p. 2748-2756 9 p.

Research output: Contribution to journalArticle

METHCOMP: A special purpose compression platform for DNA methylation data

Peng, J., Milenkovic, O. & Ochoa, I., Jan 1 2018, In : Bioinformatics. 34, 15, p. 2654-2656 3 p.

Research output: Contribution to journalArticle

2017

Effect of lossy compression of quality scores on variant calling

Ochoa, I., Hernaez, M., Goldfeder, R., Weissman, T. & Ashley, E., Jan 1 2017, In : Briefings in bioinformatics. 18, 2, p. 183-194 12 p.

Research output: Contribution to journalArticle

2016

Comment on: 'ERGC: an efficient referential genome compression algorithm'

Deorowicz, S., Grabowski, S., Ochoa, I., Hernaez, M. & Weissman, T., Apr 1 2016, In : Bioinformatics. 32, 7, p. 1115-1117 3 p.

Research output: Contribution to journalArticle

GTRAC: Fast retrieval from compressed collections of genomic variants

Tatwawadi, K., Hernaez, M., Ochoa, I. & Weissman, T., Sep 1 2016, In : Bioinformatics. 32, 17, p. i479-i486

Research output: Contribution to journalArticle

2015

IDoComp: A compression scheme for assembled genomes

Ochoa, I., Hernaez, M. & Weissman, T., Mar 1 2015, In : Bioinformatics. 31, 5, p. 626-633 8 p.

Research output: Contribution to journalArticle

QVZ: Lossy compression of quality values

Malysa, G., Hernaez, M., Ochoa, I., Rao, M., Ganesan, K. & Weissman, T., Oct 1 2015, In : Bioinformatics. 31, 19, p. 3122-3129 8 p.

Research output: Contribution to journalArticle

2014

Aligned genomic data compression via improved modeling

Ochoa, I., Hernaez, M. & Weissman, T., Dec 29 2014, In : Journal of Bioinformatics and Computational Biology. 12, 6, 1442002.

Research output: Contribution to journalArticle

CaMoDi: A new method for cancer module discovery

Manolakos, A., Ochoa, I., Venkat, K., Goldsmith, A. J. & Gevaert, O., Jan 1 2014, In : BMC genomics. 15, S8.

Research output: Contribution to journalArticle

2013

QualComp: A new lossy compressor for quality scores based on rate distortion theory

Ochoa, I., Asnani, H., Bharadia, D., Chowdhury, M., Weissman, T. & Yona, G., Jun 8 2013, In : BMC bioinformatics. 14, 1, 187.

Research output: Contribution to journalArticle

2010

LDPC codes for non-uniform memoryless sources and unequal energy allocation

Ochoa, I., Crespo, P. M. & Hernaez, M., Sep 1 2010, In : IEEE Communications Letters. 14, 9, p. 794-796 3 p., 5572892.

Research output: Contribution to journalArticle

Turbo joint source-channel coding of non-uniform memoryless sources in the bandwidth-limited regime

Ochoa, I., Crespo, P., Ser, J. D. & Hernaez, M., Apr 1 2010, In : IEEE Communications Letters. 14, 4, p. 336-338 3 p., 5439357.

Research output: Contribution to journalArticle