Idoia Ochoa-Alvarez

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Research Output

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Conference contribution
2020

DZip: Improved general-purpose lossless compression based on novel neural network modeling

Goyal, M., Tatwawadi, K., Chandak, S. & Ochoa, I., Mar 2020, Proceedings - DCC 2020: Data Compression Conference. Bilgin, A., Marcellin, M. W., Serra-Sagrista, J. & Storer, J. A. (eds.). Institute of Electrical and Electronics Engineers Inc., 1 p. 9105846. (Data Compression Conference Proceedings; vol. 2020-March).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2019

AliCo: A New Efficient Representation for SAM Files

Ochoa, I., Li, H., Baumgarte, F., Hergenrother, C., Voges, J. & Hernaez, M., May 10 2019, Proceedings - DCC 2019: 2019 Data Compression Conference. Storer, J. A., Bilgin, A., Serra-Sagrista, J. & Marcellin, M. W. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 93-102 10 p. 8712770. (Data Compression Conference Proceedings; vol. 2019-March).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Compression of Nanopore FASTQ Files

Dufort y Álvarez, G., Seroussi, G., Smircich, P., Sotelo, J., Ochoa, I. & Martín, Á., Jan 1 2019, Bioinformatics and Biomedical Engineering - 7th International Work-Conference, IWBBIO 2019, Proceedings. Ortuño, F., Rojas, I., Rojas, F., Valenzuela, O. & Ortuño, F. (eds.). Springer-Verlag Berlin Heidelberg, p. 36-47 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11465 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

DeepZip: Lossless Data Compression Using Recurrent Neural Networks

Goyal, M., Tatwawadi, K., Chandak, S. & Ochoa, I., May 10 2019, Proceedings - DCC 2019: 2019 Data Compression Conference. Bilgin, A., Storer, J. A., Marcellin, M. W. & Serra-Sagrista, J. (eds.). Institute of Electrical and Electronics Engineers Inc., 1 p. 8712659. (Data Compression Conference Proceedings; vol. 2019-March).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2017

GeneComp, a New Reference-Based Compressor for SAM Files

Long, R., Hernaez, M., Ochoa, I. & Weissman, T., May 8 2017, Proceedings - DCC 2017, 2017 Data Compression Conference. Bilgin, A., Serra-Sagrista, J., Marcellin, M. W. & Storer, J. A. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 330-339 10 p. 7923646. (Data Compression Conference Proceedings; vol. Part F127767).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

A Cluster-Based Approach to Compression of Quality Scores

Hernaez, M., Ochoa, I. & Weissman, T., Dec 15 2016, Proceedings - DCC 2016: 2016 Data Compression Conference. Marcellin, M. W., Bilgin, A., Serra-Sagrista, J. & Storer, J. A. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 261-270 10 p. 7786170. (Data Compression Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores

Ochoa, I., No, A., Hernaez, M. & Weissman, T., Oct 21 2016, 2016 IEEE Information Theory Workshop, ITW 2016. Institute of Electrical and Electronics Engineers Inc., p. 121-125 5 p. 7606808. (2016 IEEE Information Theory Workshop, ITW 2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Denoising of Quality Scores for Boosted Inference and Reduced Storage

Ochoa, I., Hernaez, M., Goldfeder, R., Weissman, T. & Ashley, E., Dec 15 2016, Proceedings - DCC 2016: 2016 Data Compression Conference. Marcellin, M. W., Bilgin, A., Serra-Sagrista, J. & Storer, J. A. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 251-260 10 p. 7786169. (Data Compression Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2014

Compression schemes for similarity queries

Ochoa, I., Ingber, A. & Weissman, T., Jan 1 2014, Proceedings - DCC 2014: 2014 Data Compression Conference. Institute of Electrical and Electronics Engineers Inc., p. 332-341 10 p. 6824441. (Data Compression Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2013

Efficient similarity queries via lossy compression

Ochoa, I., Ingber, A. & Weissman, T., Jan 1 2013, 2013 51st Annual Allerton Conference on Communication, Control, and Computing, Allerton 2013. IEEE Computer Society, p. 883-889 7 p. 6736618. (2013 51st Annual Allerton Conference on Communication, Control, and Computing, Allerton 2013).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2012

Reference based genome compression

Chern, B. G., Ochoa-Alvarez, I., Manolakos, A., No, A., Venkat, K. & Weissman, T., Dec 1 2012, 2012 IEEE Information Theory Workshop, ITW 2012. p. 427-431 5 p. 6404708. (2012 IEEE Information Theory Workshop, ITW 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2010

Joint Turbo coding and source-controlled modulation of cycle-stationary sources in the bandwidth-limited regime

Ochoa-Alvarez, I., Crespo, P. M., Del Ser, J. & Hernaez, M., Dec 1 2010, Mobile Lightweight Wireless Systems - Second International ICST Conference, MOBILIGHT 2010, Revised Selected Papers. p. 618-625 8 p. (Lecture Notes of the Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering; vol. 45 LNICST).

Research output: Chapter in Book/Report/Conference proceedingConference contribution