Idoia Ochoa-Alvarez

20102019

Research output per year

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Research Output

AliCo: A New Efficient Representation for SAM Files

Ochoa, I., Li, H., Baumgarte, F., Hergenrother, C., Voges, J. & Hernaez, M., May 10 2019, Proceedings - DCC 2019: 2019 Data Compression Conference. Storer, J. A., Bilgin, A., Serra-Sagrista, J. & Marcellin, M. W. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 93-102 10 p. 8712770. (Data Compression Conference Proceedings; vol. 2019-March).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Compression of Nanopore FASTQ Files

    Dufort y Álvarez, G., Seroussi, G., Smircich, P., Sotelo, J., Ochoa-Alvarez, I. & Martín, Á., Jan 1 2019, Bioinformatics and Biomedical Engineering - 7th International Work-Conference, IWBBIO 2019, Proceedings. Ortuño, F., Rojas, I., Rojas, F., Valenzuela, O. & Ortuño, F. (eds.). Springer-Verlag, p. 36-47 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11465 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • DeepZip: Lossless Data Compression Using Recurrent Neural Networks

    Goyal, M., Tatwawadi, K., Chandak, S. & Ochoa, I., May 10 2019, Proceedings - DCC 2019: 2019 Data Compression Conference. Bilgin, A., Storer, J. A., Marcellin, M. W. & Serra-Sagrista, J. (eds.). Institute of Electrical and Electronics Engineers Inc., 1 p. 8712659. (Data Compression Conference Proceedings; vol. 2019-March).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Denoising of Aligned Genomic Data

    Fischer-Hwang, I., Ochoa, I., Weissman, T. & Hernaez, M., Dec 1 2019, In : Scientific reports. 9, 1, 15067.

    Research output: Contribution to journalArticle

    Open Access
  • MassComp, a lossless compressor for mass spectrometry data

    Yang, R., Chen, X. & Ochoa, I., Jul 1 2019, In : BMC bioinformatics. 20, 1, 368.

    Research output: Contribution to journalArticle

    Open Access
  • Datasets

    VCF files used for VEF: a Variant Filtering tool based on Ensemble methods

    Zhang, C. (Creator), Ochoa-Alvarez, I. (Creator), University of Illinois at Urbana-Champaign, Nov 18 2019

    Dataset