Idoia Ochoa-Alvarez

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Research Output

GABAC: An arithmetic coding solution for genomic data

Voges, J., Paridaens, T., Müntefering, F., Mainzer, L. S., Bliss, B., Yang, M., Ochoa, I., Fostier, J., Ostermann, J., Hernaez, M. & Hancock, J., Apr 1 2020, In : Bioinformatics. 36, 7, p. 2275-2277 3 p.

Research output: Contribution to journalArticle

Open Access
  • VEF: a variant filtering tool based on ensemble methods

    Zhang, C. & Ochoa, I., Apr 15 2020, In : Bioinformatics (Oxford, England). 36, 8, p. 2328-2336 9 p.

    Research output: Contribution to journalArticle

  • AliCo: A New Efficient Representation for SAM Files

    Ochoa, I., Li, H., Baumgarte, F., Hergenrother, C., Voges, J. & Hernaez, M., May 10 2019, Proceedings - DCC 2019: 2019 Data Compression Conference. Storer, J. A., Bilgin, A., Serra-Sagrista, J. & Marcellin, M. W. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 93-102 10 p. 8712770. (Data Compression Conference Proceedings; vol. 2019-March).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Compression of Nanopore FASTQ Files

    Dufort y Álvarez, G., Seroussi, G., Smircich, P., Sotelo, J., Ochoa, I. & Martín, Á., Jan 1 2019, Bioinformatics and Biomedical Engineering - 7th International Work-Conference, IWBBIO 2019, Proceedings. Ortuño, F., Rojas, I., Rojas, F., Valenzuela, O. & Ortuño, F. (eds.). Springer-Verlag Berlin Heidelberg, p. 36-47 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11465 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • DeepZip: Lossless Data Compression Using Recurrent Neural Networks

    Goyal, M., Tatwawadi, K., Chandak, S. & Ochoa, I., May 10 2019, Proceedings - DCC 2019: 2019 Data Compression Conference. Bilgin, A., Storer, J. A., Marcellin, M. W. & Serra-Sagrista, J. (eds.). Institute of Electrical and Electronics Engineers Inc., 1 p. 8712659. (Data Compression Conference Proceedings; vol. 2019-March).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Datasets

    Simulated multi-sample tumor bulk sequencing data

    Zhang, C. (Creator), El-Kebir, M. (Creator) & Ochoa-Alvarez, I. (Creator), University of Illinois at Urbana-Champaign, May 31 2020

    Dataset

    VCF files used for VEF: a Variant Filtering tool based on Ensemble methods

    Zhang, C. (Creator) & Ochoa-Alvarez, I. (Creator), University of Illinois at Urbana-Champaign, Nov 18 2019

    Dataset