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A brief note concerning archaebacterial phylogeny

Olsen, G. J. & Woese, C. R., 1989, In : Canadian Journal of Microbiology. 35, 1, p. 119-123 5 p.

Research output: Contribution to journalArticle

A microbiological study of Guaymas Basin high temperature hydrothermal vents

Karl, D. M., Taylor, G. T., Novitsky, J. A., Jannasch, H. W., Wirsen, C. O., Pace, N. R., Lane, D. J., Olsen, G. J. & Giovannoni, S. J., May 1988, In : Deep Sea Research Part A, Oceanographic Research Papers. 35, 5, p. 777-791 15 p.

Research output: Contribution to journalArticle

Analysis of hydrothermal vent-associated symbionts by ribosomal RNA sequences

Stahl, D. A., Lane, D. J., Olsen, G. J. & Pace, N. R., Jan 1 1984, In : Science. 224, 4647, p. 407-408 2 p.

Research output: Contribution to journalArticle

An archaeal genomic signature

Graham, D. E., Overbeek, R., Olsen, G. J. & Woese, C. R., Mar 28 2000, In : Proceedings of the National Academy of Sciences of the United States of America. 97, 7, p. 3304-3308 5 p.

Research output: Contribution to journalArticle

A Phylogenetic Analysis of Aquifex pyrophilus

Burggraf, S., Olsen, G. J., Stetter, K. O. & Woese, C. R., Jan 1 1992, In : Systematic and Applied Microbiology. 15, 3, p. 352-356 5 p.

Research output: Contribution to journalArticle

Archaeal and bacterial hyperthermophiles horizontal gene exchange or common ancestry?

Kyrpides, N. C. & Olsen, G. J., Aug 1 1999, In : Trends in Genetics. 15, 8, p. 298-299 2 p.

Research output: Contribution to journalArticle

Archaeal RecA homologues: Different response to DNA-damaging agents in mesophilic and thermophilic Archaea

Reich, C. I., McNeil, L. K., Brace, J. L., Brucker, J. K. & Olsen, G. J., Dec 1 2001, In : Extremophiles. 5, 4, p. 265-275 11 p.

Research output: Contribution to journalArticle

Are arguments against archaebacteria valid?

Woese, C. R., Pace, N. R. & Olsen, G. J., Dec 1 1986, In : Nature. 320, 6061, p. 401-402 2 p.

Research output: Contribution to journalArticle

A reconstruction of the metabolism of Methanococcus jannaschii from sequence data

Selkov, E., Maltsev, N., Olsen, G. J., Overbeek, R. & Whitman, W. B., Sep 15 1997, In : Gene. 197, 1-2, p. GC11-GC26

Research output: Contribution to journalArticle

Assignment of the agent of Tyzzer's disease to Clostridium piliforme comb. nov. on the basis of 16S rRNA sequence analysis

Duncan, A. J., Carman, R. J., Olsen, G. J. & Wilson, K. H., Jan 1 1993, In : International Journal of Systematic Bacteriology. 43, 2, p. 314-318 5 p.

Research output: Contribution to journalArticle

A whole-genome approach to identifying protein binding sites: Promoters in Methanocaldococcus (Methanococcus) jannaschii

Li, E., Reich, C. I. & Olsen, G. J., Dec 1 2008, In : Nucleic acids research. 36, 22, p. 6948-6958 11 p.

Research output: Contribution to journalArticle

Biochemical characterization of archaeal transcription factors

Coldn Gonzalez, G. M., McNeil, L. K., Reich, C. I. & Olsen, G. J., Dec 1 1997, In : FASEB Journal. 11, 9, p. A943

Research output: Contribution to journalArticle

Campylobacter pylori, the spiral bacterium associated with human gastritis, is not a true Campylobacter sp.

Romaniuk, P. J., Zoltowska, B., Trust, T. J., Lane, D. J., Olsen, G. J., Pace, N. R. & Stahl, D. A., Jan 1 1987, In : Journal of bacteriology. 169, 5, p. 2137-2141 5 p.

Research output: Contribution to journalArticle

Characterization of a Yellowstone hot spring microbial community by 5S rRNA sequences.

Stahl, D. A., Lane, D. J., Olsen, G. J. & Pace, N. R., Jun 1 1985, In : Applied and environmental microbiology. 49, 6, p. 1379-1384 6 p.

Research output: Contribution to journalArticle

Characterizing the native codon usages of a genome: An axis projection approach

Davis, J. J. & Olsen, G. J., Jan 1 2011, In : Molecular biology and evolution. 28, 1, p. 211-221 11 p.

Research output: Contribution to journalArticle

Cloning, characterization and sequence comparison of the gene coding for IMP dehydrogenase from Pyrococcus furiosus

Collart, F. R., Osipiuk, J., Trent, J., Olsen, G. J. & Huberman, E., Jan 1 1996, In : Gene. 174, 2, p. 209-216 8 p.

Research output: Contribution to journalArticle

Cloning and characterization of the gene encoding IMP dehydrogenase from Arabidopsis thaliana

Collart, F. R., Osipiuk, J., Trent, J., Olsen, G. J. & Huberman, E., Jan 1 1996, In : Gene. 174, 2, p. 217-220 4 p.

Research output: Contribution to journalArticle

Compilation and analysis of intein sequences

Perler, F. B., Olsen, G. J. & Adam, E., Mar 15 1997, In : Nucleic acids research. 25, 6, p. 1087-1093 7 p.

Research output: Contribution to journalArticle

Complete genome sequence of the Methanogenic archaeon, Methanococcus jannaschii

Bult, C. J., White, O., Olsen, G. J., Zhou, L., Fleischmann, R. D., Sutton, G. G., Blake, J. A., FitzGerald, L. M., Clayton, R. A., Gocayne, J. D., Kerlavage, A. R., Dougherty, B. A., Tomb, J. F., Adams, M. D., Reich, C. I., Overbeek, R., Kirkness, E. F., Weinstock, K. G., Merrick, J. M., Glodek, A. & 20 others, Scott, J. L., Geoghagen, N. S. M., Weidman, J. F., Fuhrmann, J. L., Nguyen, D., Utterback, T. R., Kelley, J. M., Peterson, J. D., Sadow, P. W., Hanna, M. C., Cotton, M. D., Roberts, K. M., Hurst, M. A., Kaine, B. P., Borodovsky, M., Klenk, H. P., Fraser, C. M., Smith, H. O., Woese, C. R. & Venter, J. C., Aug 23 1996, In : Science. 273, 5278, p. 1058-1073 16 p.

Research output: Contribution to journalArticle

Construction of the mycoplasma evolutionary tree from 5S rRNA sequence data

Rogers, M. J., Simmons, J., Walker, R. T., Weisburg, W. G., Woese, C. R., Tanner, R. S., Robinson, I. M., Stahl, D. A., Olsen, G. & Leach, R. H., Jun 13 1985, In : Proceedings of the National Academy of Sciences of the United States of America. 82, 4, p. 1160-1164 5 p.

Research output: Contribution to journalArticle

CRITICA: Coding region identification tool invoking comparative analysis

Badger, J. H. & Olsen, G. J., Apr 1999, In : Molecular biology and evolution. 16, 4, p. 512-524 13 p.

Research output: Contribution to journalArticle

Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes

Frank, J. A., Reich, C. I., Sharma, S., Weisbaum, J. S., Wilson, B. A. & Olsen, G. J., Apr 1 2008, In : Applied and environmental microbiology. 74, 8, p. 2461-2470 10 p.

Research output: Contribution to journalArticle

Differences between the normal vaginal bacterial community of baboons and that of humans

Rivera, A. J., Frank, J. A., Stumpf, R., Salyers, A. A., Wilson, B. A., Olsen, G. J. & Leigh, S., Feb 1 2011, In : American journal of primatology. 73, 2, p. 119-126 8 p.

Research output: Contribution to journalArticle

Enzymatic and Chemical Structure Mapping of Mouse 28S Ribosomal Ribonucleic Acid Contacts in 5.8S Ribosomal Ribonucleic Acid

Walker, T. A., Johnson, K. D., Olsen, G. J., Peters, M. A. & Pace, N. R., May 1982, In : Biochemistry. 21, 10, p. 2320-2329 10 p.

Research output: Contribution to journalArticle

Evidence from 12S ribosomal RNA sequences that onychophorans are modified arthropods

Ballard, J. W. O., Olsen, G. J., Faith, D. P., Odgers, W. A., Rowell, D. M. & Atkinson, P. W., Jan 1 1992, In : Science. 258, 5086, p. 1345-1348 4 p.

Research output: Contribution to journalArticle

Evolutionary relationships among cyanobacteria and green chloroplasts

Giovannoni, S. J., Turner, S., Olsen, G. J., Barns, S., Lane, D. J. & Pace, N. R., Jan 1 1988, In : Journal of bacteriology. 170, 8, p. 3584-3592 9 p.

Research output: Contribution to journalArticle

Evolutionary relationships among sulfur- and iron-oxidizing eubacteria

Lane, D. J., Harrison, A. P., Stahl, D., Pace, B., Giovannoni, S. J., Olsen, G. J. & Pace, N. R., Jan 1 1992, In : Journal of bacteriology. 174, 1, p. 269-278 10 p.

Research output: Contribution to journalArticle

Evolution of DNA replication protein complexes in Eukaryotes and Archaea

Chia, N., Cann, I. & Olsen, G. J., Aug 9 2010, In : PloS one. 5, 6, e10866.

Research output: Contribution to journalArticle

Evolution of eukaryotic transcription: Insights from the genome of Giardia lamblia

Best, A. A., Morrison, H. G., McArthur, A. G., Sogin, M. L. & Olsen, G. J., Aug 1 2004, In : Genome Research. 14, 8, p. 1537-1547 11 p.

Research output: Contribution to journalArticle

FastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood

Olsen, G. J., Matsuda, H., Hagstrom, R. & Overbeek, R., Feb 1 1994, In : Bioinformatics. 10, 1, p. 41-48 8 p.

Research output: Contribution to journalArticle

Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction

Anderson, I., Rodriguez, J., Susanti, D., Porat, I., Reich, C., Ulrich, L. E., Elkins, J. G., Mavromatis, K., Lykidis, A., Kim, E., Thompson, L. S., Nolan, M., Land, M., Copeland, A., Lapidus, A., Lucas, S., Detter, C., Zhulin, I. B., Olsen, G. J., Whitman, W. & 3 others, Mukhopadhyay, B., Bristow, J. & Kyrpides, N., Apr 1 2008, In : Journal of bacteriology. 190, 8, p. 2957-2965 9 p.

Research output: Contribution to journalArticle

Genomes of the class Erysipelotrichia clarify the firmicute origin of the class Mollicutes

Davis, J. J., Xia, F., Overbeek, R. A. & Olsen, G. J., Jul 1 2013, In : International Journal of Systematic and Evolutionary Microbiology. 63, PART7, p. 2727-2741 15 p.

Research output: Contribution to journalArticle

Genomic comparison of the closely-related Salmonella enterica serovars Enteritidis, Dublin and Gallinarum

Matthews, T. D., Schmieder, R., Silva, G. G. Z., Busch, J., Cassman, N., Dutilh, B. E., Green, D., Matlock, B., Heffernan, B., Olsen, G. J., Hanna, L. F., Schifferli, D. M., Maloy, S., Dinsdale, E. A. & Edwards, R. A., Jun 3 2015, In : PloS one. 10, 6, e0126883.

Research output: Contribution to journalArticle

Genomic minimalism in the early diverging intestinal parasite Giardia lamblia

Morrison, H. G., McArthur, A. G., Gillin, F. D., Aley, S. B., Adam, R. D., Olsen, G. J., Best, A. A., Cande, W. Z., Chen, F., Cipriano, M. J., Davids, B. J., Dawson, S. C., Elmendorf, H. G., Hehl, A. B., Holder, M. E., Huse, S. M., Kim, U. U., Lasek-Nesselquist, E., Manning, G., Nigam, A. & 9 others, Nixon, J. E. J., Palm, D., Passamaneck, N. E., Prabhu, A., Reich, C. I., Reiner, D. S., Samuelson, J., Svard, S. G. & Sogin, M. L., Sep 28 2007, In : Science. 317, 5846, p. 1921-1926 6 p.

Research output: Contribution to journalArticle

Global analysis of a "simple" proteome: Methanococcus jannaschii

Giometti, C. S., Reich, C., Tollaksen, S., Babnigg, G., Lim, H., Zhu, W., Yates, J. & Olsen, G., Dec 25 2002, In : Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences. 782, 1-2, p. 227-243 17 p.

Research output: Contribution to journalArticle

Heterogeneity of vaginal microbial communities within individuals

Kim, T. K., Thomas, S. M., Ho, M., Sharma, S., Reich, C. I., Frank, J. A., Yeater, K. M., Biggs, D. R., Nakamura, N., Stumpf, R., Leigh, S. R., Tapping, R. I., Blanke, S. R., Slauch, J. M., Gaskins, H. R., Weisbaum, J. S., Olsen, G. J., Hoyer, L. L. & Wilson, B. A., Apr 1 2009, In : Journal of Clinical Microbiology. 47, 4, p. 1181-1189 9 p.

Research output: Contribution to journalArticle

Identification of 2D-gel proteins: A comparison of MALDI/TOF peptide mass mapping to μ LC-ESI tandem mass spectrometry

Lim, H., Eng, J., Yates, J. R., Tollaksen, S. L., Giometti, C. S., Holden, J. F., Adams, M. W. W., Reich, C. I., Olsen, G. J. & Hays, L. G., Sep 2003, In : Journal of the American Society for Mass Spectrometry. 14, 9, p. 957-970 14 p.

Research output: Contribution to journalArticle

Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center

Wattam, A. R., Davis, J. J., Assaf, R., Boisvert, S., Brettin, T., Bun, C., Conrad, N., Dietrich, E. M., Disz, T., Gabbard, J. L., Gerdes, S., Henry, C. S., Kenyon, R. W., Machi, D., Mao, C., Nordberg, E. K., Olsen, G. J., Murphy-Olson, D. E., Olson, R., Overbeek, R. & 8 others, Parrello, B., Pusch, G. D., Shukla, M., Vonstein, V., Warren, A., Xia, F., Yoo, H. & Stevens, R. L., Jan 1 2017, In : Nucleic acids research. 45, D1, p. D535-D542

Research output: Contribution to journalArticle

Majority-rule consensus of phylogenetic trees obtained by maximum- likelihood analysis

Jermiin, L. S., Olsen, G. J., Mengersen, K. L. & Easteal, S., Jan 1 1997, In : Molecular biology and evolution. 14, 12, p. 1296-1302 7 p.

Research output: Contribution to journalArticle

Messenger RNA processing in Methanocaldococcus (Methanococcus) jannaschii

Zhang, J. & Olsen, G. J., Oct 1 2009, In : RNA. 15, 10, p. 1909-1916 8 p.

Research output: Contribution to journalArticle

Methanococcus jannaschii genome: revisited.

Kyrpides, N. C., Olsen, G. J., Klenk, H. P., White, O. & Woese, C. R., 1996, In : Microbial & comparative genomics. 1, 4, p. 329-338 10 p.

Research output: Contribution to journalArticle

Mitochondrial origins

Yang, D., Oyaizu, Y., Oyaizu, H., Olsen, G. J. & Woese, C. R., Dec 1 1985, In : Proceedings of the National Academy of Sciences of the United States of America. 82, 13, p. 4443-4447 5 p.

Research output: Contribution to journalArticle

Molecular and genetic organization of the antennapedia gene complex of drosophila melanogaster

Kaufman, T. C., Seeger, M. A. & Olsen, G., Jan 1 1990, In : Advances in Genetics. 27, C, p. 309-362 54 p.

Research output: Contribution to journalArticle

Molecular phylogeny of the animal kingdom

Field, K. G., Olsen, G. J., Lane, D. J., Giovannoni, S. J., Ghiselin, M. T., Raff, E. C., Pace, N. R. & Raff, R. A., Jan 1 1988, In : Science. 239, 4841, p. 748-753 6 p.

Research output: Contribution to journalArticle

Nucleotide Sequence of Dictyostelium discoideum 5.8S Ribosomal Ribonucleic Acid: Evolutionary and Secondary Structural Implications

Olsen, G. J. & Sogin, M. L., May 1982, In : Biochemistry. 21, 10, p. 2335-2343 9 p.

Research output: Contribution to journalArticle

Nucleotide Sequence of the Dictyostelium discoideum Small-Subunit Ribosomal Ribonucleic Acid Inferred from the Gene Sequence: Evolutionary Implications

McCarroll, R., Olsen, G. J., Stahl, Y. D., Woese, C. R., Sogin, M. L., McCarroll, R., Olsen, G. J., Stahl, Y. D., Woese, C. R., Sogin, M. L. & Woese, C. R., Jan 1 1983, In : Biochemistry. 22, 25, p. 5858-5868 11 p.

Research output: Contribution to journalArticle

Paramecium mitochondrial genes. I. Small subunit rRNA gene sequence and microevolution

Seilhamer, J. J., Olsen, G. J. & Cummings, D. J., 1984, In : Journal of Biological Chemistry. 259, 8, p. 5167-5172 6 p.

Research output: Contribution to journalArticle

PATRIC as a unique resource for studying antimicrobial resistance

Antonopoulos, D. A., Assaf, R., Aziz, R. K., Brettin, T., Bun, C., Conrad, N., Davis, J. J., Dietrich, E. M., Disz, T., Gerdes, S., Kenyon, R. W., Machi, D., Mao, C., Murphy-Olson, D. E., Nordberg, E. K., Olsen, G. J., Olson, R., Overbeek, R., Parrello, B., Pusch, G. D. & 9 others, Santerre, J., Shukla, M., Stevens, R. L., Vanoeffelen, M., Vonstein, V., Warren, A. S., Wattam, A. R., Xia, F. & Yoo, H., Mar 27 2018, In : Briefings in bioinformatics. 20, 4, p. 1094-1102 9 p.

Research output: Contribution to journalArticle

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