If you made any changes in Pure, your changes will be visible here soon.

Research Output 1982 2018

Filter
Article
1982

Enzymatic and Chemical Structure Mapping of Mouse 28S Ribosomal Ribonucleic Acid Contacts in 5.8S Ribosomal Ribonucleic Acid

Walker, T. A., Johnson, K. D., Olsen, G. J., Peters, M. A. & Pace, N. R., May 1982, In : Biochemistry. 21, 10, p. 2320-2329 10 p.

Research output: Contribution to journalArticle

Ribonucleases
Nucleotides
Diethyl Pyrocarbonate
RNA
Molecules

Nucleotide Sequence of Dictyostelium discoideum 5.8S Ribosomal Ribonucleic Acid: Evolutionary and Secondary Structural Implications

Olsen, G. J. & Sogin, M. L., May 1982, In : Biochemistry. 21, 10, p. 2335-2343 9 p.

Research output: Contribution to journalArticle

Dictyostelium
Nucleotides
RNA
Phylogeny
1983

Nucleotide Sequence of the Dictyostelium discoideum Small-Subunit Ribosomal Ribonucleic Acid Inferred from the Gene Sequence: Evolutionary Implications

McCarroll, R., Olsen, G. J., Stahl, Y. D., Woese, C. R., Sogin, M. L., McCarroll, R., Olsen, G. J., Stahl, Y. D., Woese, C. R., Sogin, M. L. & Woese, C. R., Jan 1 1983, In : Biochemistry. 22, 25, p. 5858-5868 11 p.

Research output: Contribution to journalArticle

Small Ribosome Subunits
Dictyostelium
Nucleotides
Genes
RNA

Secondary structure of tbe Dictyostelium discoideum small subunit ribosomal RNA

Olsen, G. J., Mccarroll, R. & Sogin, M. L., Nov 25 1983, In : Nucleic acids research. 11, 22, p. 8037-8049 13 p.

Research output: Contribution to journalArticle

Nucleic Acid Conformation
Species Specificity
Dictyostelium
Ribosomal RNA
Phylogeny
1984

Analysis of hydrothermal vent-associated symbionts by ribosomal RNA sequences

Stahl, D. A., Lane, D. J., Olsen, G. J. & Pace, N. R., Jan 1 1984, In : Science. 224, 4647, p. 407-408 2 p.

Research output: Contribution to journalArticle

symbionts
ribosomal RNA
Solemya velum
Bivalvia
phylogeny

Paramecium mitochondrial genes. I. Small subunit rRNA gene sequence and microevolution

Seilhamer, J. J., Olsen, G. J. & Cummings, D. J., 1984, In : Journal of Biological Chemistry. 259, 8, p. 5167-5172 6 p.

Research output: Contribution to journalArticle

Paramecium
Mitochondrial Genes
rRNA Genes
Genes
Ribosomal DNA
1985

Characterization of a Yellowstone hot spring microbial community by 5S rRNA sequences.

Stahl, D. A., Lane, D. J., Olsen, G. J. & Pace, N. R., Jun 1 1985, In : Applied and environmental microbiology. 49, 6, p. 1379-1384 6 p.

Research output: Contribution to journalArticle

Hot Springs
hot springs
Archaea
thermal spring
microbial communities

Construction of the mycoplasma evolutionary tree from 5S rRNA sequence data

Rogers, M. J., Simmons, J., Walker, R. T., Weisburg, W. G., Woese, C. R., Tanner, R. S., Robinson, I. M., Stahl, D. A., Olsen, G. & Leach, R. H., Jun 13 1985, In : Proceedings of the National Academy of Sciences of the United States of America. 82, 4, p. 1160-1164 5 p.

Research output: Contribution to journalArticle

Mycoplasma
Acholeplasma
Spiroplasma
Genome
Mycoplasma mycoides

Mitochondrial origins

Yang, D., Oyaizu, Y., Oyaizu, H., Olsen, G. J. & Woese, C. R., Dec 1 1985, In : Proceedings of the National Academy of Sciences of the United States of America. 82, 13, p. 4443-4447 5 p.

Research output: Contribution to journalArticle

Mitochondria
Comamonas testosteroni
16S Ribosomal RNA
Rickettsia
Proteobacteria

Phylogenetic analysis of the genera Thiobacillus and Thiomicrospira by 5S rRNA sequences

Lane, D. J., Stahl, D. A., Olsen, G. J., Heller, D. J. & Pace, N. R., Nov 6 1985, In : Journal of bacteriology. 163, 1, p. 75-81 7 p.

Research output: Contribution to journalArticle

Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses

Lane, D. J., Pace, B., Olsen, G. J., Stahl, D. A., Sogin, M. L. & Pace, N. R., Dec 1 1985, In : Proceedings of the National Academy of Sciences of the United States of America. 82, 20, p. 6955-6959 5 p.

Research output: Contribution to journalArticle

Sequence of the 16S rRNA gene from the thermoacidophilic archaebacterium Sulfolobus solfataricus and its evolutionary implications

Olsen, G. J., Pace, N. R., Nuell, M., Kaine, B. P., Gupta, R. & Woese, C. R., Dec 1 1985, In : Journal of Molecular Evolution. 22, 4, p. 301-307 7 p.

Research output: Contribution to journalArticle

Sulfolobus solfataricus
secondary structure
Archaea
eukaryote
rRNA Genes

The small-subunit ribosomal RNA gene sequences from the hypotrichous ciliates Oxytricha nova and Stylonychia pustulata

Elwood, H. J., Olsen, G. J. & Sogin, M. L., 1985, In : Molecular Biology and Evolution. 2, 5, p. 399-410 12 p.

Research output: Contribution to journalArticle

Oxytricha
Ribosomal RNA
ciliate
Fungi
rRNA Genes
1986

Are arguments against archaebacteria valid?

Woese, C. R., Pace, N. R. & Olsen, G. J., Dec 1 1986, In : Nature. 320, 6061, p. 401-402 2 p.

Research output: Contribution to journalArticle

Archaea

The RNA component of the Bacillus subtilis RNase P. Sequence, activity, and partial secondary structure

Reich, C., Gardiner, K. J., Olsen, G. J., Pace, B., Marsh, T. L. & Pace, N. R., Dec 1 1986, In : Journal of Biological Chemistry. 261, 17, p. 7888-7893 6 p.

Research output: Contribution to journalArticle

Ribonuclease P
Bacilli
Bacillus subtilis
RNA
Genes
1987

Campylobacter pylori, the spiral bacterium associated with human gastritis, is not a true Campylobacter sp.

Romaniuk, P. J., Zoltowska, B., Trust, T. J., Lane, D. J., Olsen, G. J., Pace, N. R. & Stahl, D. A., Jan 1 1987, In : Journal of bacteriology. 169, 5, p. 2137-2141 5 p.

Research output: Contribution to journalArticle

Campylobacter
Gastritis
Helicobacter pylori
Bacteria
Wolinella
branching
ribosomal RNA
phylogeny
methodology

Structure and catalytic function in ribonuclease P

Pace, N. R., Reich, C., James, B. D., Olsen, G. J., Pace, B. & Waugh, D. S., Jan 1 1987, In : Cold Spring Harbor symposia on quantitative biology. 52, p. 239-248 10 p.

Research output: Contribution to journalArticle

ribonucleases
1988

A microbiological study of Guaymas Basin high temperature hydrothermal vents

Karl, D. M., Taylor, G. T., Novitsky, J. A., Jannasch, H. W., Wirsen, C. O., Pace, N. R., Lane, D. J., Olsen, G. J. & Giovannoni, S. J., May 1988, In : Deep Sea Research Part A, Oceanographic Research Papers. 35, 5, p. 777-791 15 p.

Research output: Contribution to journalArticle

black smoker
hydrothermal vent
hydrothermal plume
bacterium
basin

Evolutionary relationships among cyanobacteria and green chloroplasts

Giovannoni, S. J., Turner, S., Olsen, G. J., Barns, S., Lane, D. J. & Pace, N. R., Jan 1 1988, In : Journal of bacteriology. 170, 8, p. 3584-3592 9 p.

Research output: Contribution to journalArticle

Cyanobacteria
Chloroplasts
Cyanophora
Dideoxynucleotides
Chlorophyta

Molecular phylogeny of the animal kingdom

Field, K. G., Olsen, G. J., Lane, D. J., Giovannoni, S. J., Ghiselin, M. T., Raff, E. C., Pace, N. R. & Raff, R. A., Jan 1 1988, In : Science. 239, 4841, p. 748-753 6 p.

Research output: Contribution to journalArticle

Phylogeny
18S Ribosomal RNA
Platyhelminths
Cnidaria
Chordata

Phylogenetic Analysis Using Ribosomal RNA

Olsen, G. J., Jan 1988, In : Methods in enzymology. 164, C, p. 793-812 20 p.

Research output: Contribution to journalArticle

Ribosomal RNA
Phylogeny
Sequence Homology
Sequence Analysis
RNA

Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells.

Giovannoni, S. J., DeLong, E. F., Olsen, G. J. & Pace, N. R., Feb 1988, In : Journal of bacteriology. 170, 2, p. 720-726 7 p.

Research output: Contribution to journalArticle

Oligodeoxyribonucleotides
Conserved Sequence
Nylons
Archaea
Bacteria

Reverse Transcriptase Sequencing of Ribosomal RNA for Phylogenetic Analysis

Lane, D. J., Field, K. G., Olsen, G. J. & Pace, N. R., Jan 1988, In : Methods in enzymology. 167, C, p. 138-144 7 p.

Research output: Contribution to journalArticle

Ribosomal RNA
RNA-Directed DNA Polymerase
Dideoxynucleotides
RNA
Centrifugation

Role of the protein moiety of ribonuclease P, a ribonucleoprotein enzyme

Reich, C., Olsen, G. J., Pace, B. & Pace, N. R., Jan 1 1988, In : Science. 239, 4836, p. 178-181 4 p.

Research output: Contribution to journalArticle

Ribonuclease P
Ribonucleoproteins
RNA
Enzymes
Proteins

Sulfur-oxidizing bacterial endosymbionts: analysis of phylogeny and specificity by 16S rRNA sequences.

Distel, D. L., Lane, D. J., Olsen, G. J., Giovannoni, S. J., Pace, B., Pace, N. R., Stahl, D. A. & Felbeck, H., Jun 1988, In : Journal of bacteriology. 170, 6, p. 2506-2510 5 p.

Research output: Contribution to journalArticle

Symbiosis
Phylogeny
Sulfur
Hydrothermal Vents
Proteobacteria

The secondary structure of ribonuclease P RNA, the catalytic element of a ribonucleoprotein enzyme

James, B. D., Olsen, G. J., Liu, J. & Pace, N. R., Jan 15 1988, In : Cell. 52, 1, p. 19-26 8 p.

Research output: Contribution to journalArticle

Ribonuclease P
Catalytic RNA
Ribonucleoproteins
Bacilli
RNA
1989

A brief note concerning archaebacterial phylogeny

Olsen, G. J. & Woese, C. R., 1989, In : Canadian Journal of Microbiology. 35, 1, p. 119-123 5 p.

Research output: Contribution to journalArticle

Phylogeny
Topology
Chemical analysis
Eukaryota
Artifacts

Phylogenetic comparative analysis and the secondary structure of ribonuclease P RNA - a review

Pace, N. R., Smith, D. K., Olsen, G. J. & James, B. D., Oct 15 1989, In : Gene. 82, 1, p. 65-75 11 p.

Research output: Contribution to journalArticle

Ribonuclease P
RNA
Guidelines
Bacteria

Phylogenetic comparative analysis of RNA secondary structure

James, B. D., Olsen, G. J. & Pace, N. R., Jan 1 1989, In : Methods in enzymology. 180, C, p. 227-239 13 p.

Research output: Contribution to journalArticle

Ribonuclease P
Ribosomal RNA
Sequence Homology
Ribonucleoproteins
Endonucleases
1990

Molecular and genetic organization of the antennapedia gene complex of drosophila melanogaster

Kaufman, T. C., Seeger, M. A. & Olsen, G. J., Jan 1 1990, In : Advances in Genetics. 27, C, p. 309-362 54 p.

Research output: Contribution to journalArticle

Drosophila melanogaster
Molecular Biology
Homeobox Genes
Genes
Drosophila

Structure detection through automated covariance search

Winker, S., Overbeek, R., Woese, C. R., Oisen, G. J. & Pfluger, N., Oct 1 1990, In : Bioinformatics. 6, 4, p. 365-371 7 p.

Research output: Contribution to journalArticle

23S Ribosomal RNA
16S Ribosomal RNA
RNA
Ribosomal RNA
Molecules
1991
position effect (genetics)
operator regions
Lakes
substitution
lakes

The ribosomal rna database project

Oisen, G. J., Larsen, N. & Woese, C. R., Apr 25 1991, In : Nucleic acids research. 19, p. 2017-2018 2 p.

Research output: Contribution to journalArticle

Bibliographic Databases
Ribosomal RNA
Nucleic Acid Databases
Bacteria
1992

A Phylogenetic Analysis of Aquifex pyrophilus

Burggraf, S., Olsen, G. J., Stetter, K. O. & Woese, C. R., Jan 1 1992, In : Systematic and Applied Microbiology. 15, 3, p. 352-356 5 p.

Research output: Contribution to journalArticle

Aquifex
phylogenetics
phylogeny
ancestry
branching

Evidence from 12S ribosomal RNA sequences that onychophorans are modified arthropods

Ballard, J. W. O., Olsen, G. J., Faith, D. P., Odgers, W. A., Rowell, D. M. & Atkinson, P. W., Jan 1 1992, In : Science. 258, 5086, p. 1345-1348 4 p.

Research output: Contribution to journalArticle

Arthropods
Scorpions
Spiders
Insects

Evolutionary relationships among sulfur- and iron-oxidizing eubacteria

Lane, D. J., Harrison, A. P., Stahl, D., Pace, B., Giovannoni, S. J., Olsen, G. J. & Pace, N. R., Jan 1 1992, In : Journal of bacteriology. 174, 1, p. 269-278 10 p.

Research output: Contribution to journalArticle

Sulfur
Iron
Bacteria
Proteobacteria
Piscirickettsiaceae
1993

Assignment of the agent of Tyzzer's disease to Clostridium piliforme comb. nov. on the basis of 16S rRNA sequence analysis

Duncan, A. J., Carman, R. J., Olsen, G. J. & Wilson, K. H., Jan 1 1993, In : International Journal of Systematic Bacteriology. 43, 2, p. 314-318 5 p.

Research output: Contribution to journalArticle

Clostridium piliforme
maximum likelihood analysis
Comb and Wattles
Clostridium
nucleic acid

The agent of tyzzer's disease is a clostridium species

Wilson, K. H., Duncan, A. J., Carman, R. J. & Olsen, G. J., Jun 1 1993, In : Clinical Infectious Diseases. 16, p. S422-S422

Research output: Contribution to journalArticle

Rodent Diseases
Bacterial RNA
16S Ribosomal RNA
Clostridium Infections
Clostridium

The ribosomal database project

Larsen, N., Olsen, G. J., Maidak, B. L., Mccaughey, M. J., Overbeek, R., Macke, T. J., Marsh, T. L. & Woese, C. R., Jul 1 1993, In : Nucleic acids research. 21, 13, p. 3021-3023 3 p.

Research output: Contribution to journalArticle

Databases
Ribosomal RNA
Sequence Alignment
Ribosomes
Software
1994

FastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood

Olsen, G. J., Matsuda, H., Hagstrom, R. & Overbeek, R., Feb 1 1994, In : Bioinformatics. 10, 1, p. 41-48 8 p.

Research output: Contribution to journalArticle

Phylogenetic Tree
DNA sequences
DNA Sequence
Maximum likelihood
Maximum Likelihood

The ribosomal database project

Maidak, B. L., Larsen, N., McCaughey, M. J., Overbeek, R., Olsen, G. J., Fogel, K., Blandy, J. & Woese, C. R., Sep 1994, In : Nucleic acids research. 22, 17, p. 3485-3487 3 p.

Research output: Contribution to journalArticle

Gophers
Software
Databases
Ribosomal RNA
Sequence Alignment
Archaeal Proteins
Thermococcus
Transcription Factor TFIID
TATA-Box Binding Protein
Archaea
1996

Cloning, characterization and sequence comparison of the gene coding for IMP dehydrogenase from Pyrococcus furiosus

Collart, F. R., Osipiuk, J., Trent, J., Olsen, G. J. & Huberman, E., Jan 1 1996, In : Gene. 174, 2, p. 209-216 8 p.

Research output: Contribution to journalArticle

IMP Dehydrogenase
Pyrococcus furiosus
Inosine Monophosphate
Organism Cloning
Oxidoreductases

Cloning and characterization of the gene encoding IMP dehydrogenase from Arabidopsis thaliana

Collart, F. R., Osipiuk, J., Trent, J., Olsen, G. J. & Huberman, E., Jan 1 1996, In : Gene. 174, 2, p. 217-220 4 p.

Research output: Contribution to journalArticle

IMP Dehydrogenase
Inosine Monophosphate
Arabidopsis
Organism Cloning
Oxidoreductases

Complete genome sequence of the Methanogenic archaeon, Methanococcus jannaschii

Bult, C. J., White, O., Olsen, G. J., Zhou, L., Fleischmann, R. D., Sutton, G. G., Blake, J. A., FitzGerald, L. M., Clayton, R. A., Gocayne, J. D., Kerlavage, A. R., Dougherty, B. A., Tomb, J. F., Adams, M. D., Reich, C. I., Overbeek, R., Kirkness, E. F., Weinstock, K. G., Merrick, J. M., Glodek, A. & 20 others, Scott, J. L., Geoghagen, N. S. M., Weidman, J. F., Fuhrmann, J. L., Nguyen, D., Utterback, T. R., Kelley, J. M., Peterson, J. D., Sadow, P. W., Hanna, M. C., Cotton, M. D., Roberts, K. M., Hurst, M. A., Kaine, B. P., Borodovsky, M., Klenk, H. P., Fraser, C. M., Smith, H. O., Woese, C. R. & Venter, J. C., Aug 23 1996, In : Science. 273, 5278, p. 1058-1073 16 p.

Research output: Contribution to journalArticle

Methanocaldococcus
Archaea
Genome
Eukaryota
Cell Division

Methanococcus jannaschii genome: revisited.

Kyrpides, N. C., Olsen, G. J., Klenk, H. P., White, O. & Woese, C. R., 1996, In : Microbial & comparative genomics. 1, 4, p. 329-338 10 p.

Research output: Contribution to journalArticle

Methanocaldococcus
Genes
Genome
Sequence Analysis
Pattern matching
1997

A reconstruction of the metabolism of Methanococcus jannaschii from sequence data

Selkov, E., Maltsev, N., Olsen, G. J., Overbeek, R. & Whitman, W. B., Sep 15 1997, In : Gene. 197, 1-2, p. GC11-GC26

Research output: Contribution to journalArticle

Factual Databases
Methanococcus
Methanocaldococcus
Chemical Models
Genetic Models

Biochemical characterization of archaeal transcription factors

Coldn Gonzalez, G. M., McNeil, L. K., Reich, C. I. & Olsen, G. J., Dec 1 1997, In : FASEB Journal. 11, 9, p. A943

Research output: Contribution to journalArticle

TATA-Box Binding Protein
Transcription Factor TFIIB
thermophilic microorganisms
binding proteins
Transcription Factors