Erik J Sacks

19942019
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Research Output 1994 2019

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Article
2019

Biomass yield in a genetically diverse Miscanthus sinensis germplasm panel evaluated at five locations revealed individuals with exceptional potential

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., Hall, M., Heo, K., Jin, X., Lipka, A. E., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Jan 1 2019, In : GCB Bioenergy.

Research output: Contribution to journalArticle

Open Access
Miscanthus giganteus
Miscanthus sinensis
germplasm
Biomass
biomass

Breeding progress and preparedness for mass-scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar

Clifton-Brown, J., Harfouche, A., Casler, M. D., Dylan Jones, H., Macalpine, W. J., Murphy-Bokern, D., Smart, L. B., Adler, A., Ashman, C., Awty-Carroll, D., Bastien, C., Bopper, S., Botnari, V., Brancourt-Hulmel, M., Chen, Z., Clark, L. V., Cosentino, S., Dalton, S., Davey, C., Dolstra, O. & 39 othersDonnison, I., Flavell, R., Greef, J., Hanley, S., Hastings, A., Hertzberg, M., Hsu, T. W., Huang, L. S., Iurato, A., Jensen, E., Jin, X., Jørgensen, U., Kiesel, A., Kim, D. S., Liu, J., McCalmont, J. P., McMahon, B. G., Mos, M., Robson, P., Sacks, E. J., Sandu, A., Scalici, G., Schwarz, K., Scordia, D., Shafiei, R., Shield, I., Slavov, G., Stanton, B. J., Swaminathan, K., Taylor, G., Torres, A. F., Trindade, L. M., Tschaplinski, T., Tuskan, G. A., Yamada, T., Yeon Yu, C., Zalesny, R. S., Zong, J. & Lewandowski, I., Jan 1 2019, In : GCB Bioenergy. 11, 1, p. 118-151 34 p.

Research output: Contribution to journalArticle

Miscanthus
Panicum virgatum
energy crops
Crops
Biomass

Genome-wide association and genomic prediction for biomass yield in a genetically diverse Miscanthus sinensis germplasm panel phenotyped at five locations in Asia and North America

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., Hall, M., Heo, K., Jin, X., Lipka, A. E., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Aug 1 2019, In : GCB Bioenergy. 11, 8, p. 988-1007 20 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus sinensis
germplasm
Nucleotides
Polymorphism
single nucleotide polymorphism

polyRAD: Genotype calling with uncertainty from sequencing data in polyploids and diploids

Clark, L. V., Lipka, A. E. & Sacks, E. J., Mar 1 2019, In : G3: Genes, Genomes, Genetics. 9, 3, p. 663-673 11 p.

Research output: Contribution to journalArticle

Open Access
Polyploidy
Diploidy
Uncertainty
Genotype
Population

Siberian Miscanthus sacchariflorus accessions surpass the exceptional chilling tolerance of the most widely cultivated clone of Miscanthus x giganteus

Pignon, C. P., Spitz, I., Sacks, E. J., Jørgensen, U., Kørup, K. & Long, S. P., Jul 1 2019, In : GCB Bioenergy. 11, 7, p. 883-894 12 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus sacchariflorus
Miscanthus giganteus
Chilling
cold tolerance
Photosynthesis

Winter hardiness of Miscanthus (I): Overwintering ability and yield of new Miscanthus ×giganteus genotypes in Illinois and Arkansas

Dong, H., Green, S. V., Nishiwaki, A., Yamada, T., Stewart, J. R., Deuter, M. & Sacks, E. J., May 1 2019, In : GCB Bioenergy. 11, 5, p. 691-705 15 p.

Research output: Contribution to journalArticle

Miscanthus giganteus
winter hardiness
Miscanthus
overwintering
Biomass

Winter hardiness of Miscanthus (II): Genetic mapping for overwintering ability and adaptation traits in three interconnected Miscanthus populations

Dong, H., Liu, S., Clark, L. V., Sharma, S., Gifford, J. M., Juvik, J. A., Lipka, A. E. & Sacks, E. J., May 1 2019, In : GCB Bioenergy. 11, 5, p. 706-726 21 p.

Research output: Contribution to journalArticle

winter hardiness
Miscanthus
overwintering
chromosome mapping
winter

Winter hardiness of Miscanthus (III): Genome-wide association and genomic prediction for overwintering ability in Miscanthus sinensis

Dong, H., Clark, L. V., Lipka, A. E., Brummer, J. E., Głowacka, K., Hall, M. C., Heo, K., Jin, X., Peng, J., Yamada, T., Ghimire, B. K., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Aug 1 2019, In : GCB Bioenergy. 11, 8, p. 930-955 26 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus sinensis
winter hardiness
Miscanthus
overwintering
genomics
2018

Establishment of Miscanthus sinensis with decreased lignin biosynthesis by Agrobacterium–mediated transformation using antisense COMT gene

Yoo, J. H., Seong, E. S., Ghimire, B. K., Heo, K., Jin, X., Yamada, T., Clark, L. V., Sacks, E. J. & Yu, C. Y., Jun 1 2018, In : Plant Cell, Tissue and Organ Culture. 133, 3, p. 359-369 11 p.

Research output: Contribution to journalArticle

caffeate O-methyltransferase
Miscanthus sinensis
transgenic plants
lignin
biosynthesis

Genetic mapping of biomass yield in three interconnected Miscanthus populations

Dong, H., Liu, S., Clark, L. V., Sharma, S., Gifford, J. M., Juvik, J. A., Lipka, A. E. & Sacks, E. J., Mar 1 2018, In : GCB Bioenergy. 10, 3, p. 165-185 21 p.

Research output: Contribution to journalArticle

Miscanthus
chromosome mapping
quantitative trait loci
Biomass
biomass

The performance of early-generation perennial winter cereals at 21 sites across four continents

Hayes, R. C., Wang, S., Newell, M. T., Turner, K., Larsen, J., Gazza, L., Anderson, J. A., Bell, L. W., Cattani, D. J., Frels, K., Galassi, E., Morgounov, A. I., Revell, C. K., Thapa, D. B., Sacks, E. J., Sameri, M., Wade, L. J., Westerbergh, A., Shamanin, V., Amanov, A. & 1 othersLi, G. D., Apr 9 2018, In : Sustainability (Switzerland). 10, 4, 1124.

Research output: Contribution to journalArticle

cereal
wheat
breeding
parents
winter
2017

Application of visible and near-infrared spectroscopy to classification of Miscanthus species

Jin, X., Chen, X., Xiao, L., Shi, C., Chen, L., Yu, B., Yi, Z., Yoo, J. H., Heo, K., Yu, C. Y., Yamada, T., Sacks, E. J. & Peng, J., Mar 1 2017, In : PloS one. 12, 4, e0171360.

Research output: Contribution to journalArticle

Miscanthus
Near infrared spectroscopy
Near-Infrared Spectroscopy
near-infrared spectroscopy
Least-Squares Analysis

Can miscanthus C 4 photosynthesis compete with festulolium C 3 photosynthesis in a temperate climate?

Jiao, X., Kørup, K., Andersen, M. N., Sacks, E. J., Zhu, X. G., Lærke, P. E. & Jørgensen, U., Jan 1 2017, In : GCB Bioenergy. 9, 1, p. 18-30 13 p.

Research output: Contribution to journalArticle

Festulolium
Miscanthus
Photosynthesis
temperate zones
photosynthesis

Determination of hemicellulose, cellulose and lignin content using visible and near infrared spectroscopy in Miscanthus sinensis

Jin, X., Chen, X., Shi, C., Li, M., Guan, Y., Yu, C. Y., Yamada, T., Sacks, E. J. & Peng, J., Jan 1 2017, In : Bioresource Technology. 241, p. 603-609 7 p.

Research output: Contribution to journalArticle

Near infrared spectroscopy
Lignin
infrared spectroscopy
Cellulose
lignin

Determination of leaf water content by visible and near-infrared spectrometry and multivariate calibration in Miscanthus

Jin, X., Shi, C., Yu, C. Y., Yamada, T. & Sacks, E. J., May 19 2017, In : Frontiers in Plant Science. 8, 721.

Research output: Contribution to journalArticle

Miscanthus
least squares
spectroscopy
calibration
water content

Genetic diversity of Miscanthus sinensis in US naturalized populations

Zhao, Y., Basak, S., Fleener, C. E., Egnin, M., Sacks, E. J., Prakash, C. S. & He, G., May 1 2017, In : GCB Bioenergy. 9, 5, p. 965-972 8 p.

Research output: Contribution to journalArticle

Miscanthus sinensis
Miscanthus
genotype
DNA
genetic variation
2016

Can chilling tolerance of C4 photosynthesis in Miscanthus be transferred to sugarcane?

Glowacka, K., Ahmed, A., Sharma, S., Abbott, T., Comstock, J. C., Long, S. P. & Sacks, E. J., Mar 1 2016, In : GCB Bioenergy. 8, 2, p. 407-418 12 p.

Research output: Contribution to journalArticle

Chilling
C4 photosynthesis
Miscanthus
Photosynthesis
cold tolerance

Ecological characteristics and in situ genetic associations for yield-component traits of wild Miscanthus from eastern Russia

Clark, L. V., Dzyubenko, E., Dzyubenko, N., Bagmet, L., Sabitov, A., Chebukin, P., Johnson, D. A., Kjeldsen, J. B., Petersen, K. K., Jørgensen, U., Yoo, J. H., Heo, K., Yu, C. Y., Zhao, H., Jin, X., Peng, J., Yamada, T. & Sacks, E. J., Oct 1 2016, In : Annals of Botany. 118, 5, p. 941-955 15 p.

Research output: Contribution to journalArticle

Miscanthus sacchariflorus
Miscanthus
yield components
Russia
Miscanthus sinensis

High-density genetic map of Miscanthus sinensis reveals inheritance of zebra stripe

Liu, S., Clark, L. V., Swaminathan, K., Gifford, J. M., Juvik, J. A. & Sacks, E. J., May 1 2016, In : GCB Bioenergy. 8, 3, p. 616-630 15 p.

Research output: Contribution to journalArticle

Miscanthus sinensis
zebras
Miscanthus
quantitative trait loci
inheritance (genetics)

TagDigger: User-friendly extraction of read counts from GBS and RAD-seq data

Clark, L. V. & Sacks, E. J., Jul 11 2016, In : Source Code for Biology and Medicine. 11, 1, 11.

Research output: Contribution to journalArticle

DNA Sequence Analysis
Names
DNA
Software
Pipelines
2015

Can the exceptional chilling tolerance of C4 photosynthesis found in Miscanthus ;× giganteus be exceeded? Screening of a novel Miscanthus Japanese germplasm collection

Głowacka, K., Jørgensen, U., Kjeldsen, J. B., Kørup, K., Spitz, I., Sacks, E. J. & Long, S. P., May 1 2015, In : Annals of Botany. 115, 6, p. 981-990 10 p.

Research output: Contribution to journalArticle

C4 photosynthesis
Miscanthus
germplasm conservation
cold tolerance
screening

Characterizing a miscanthus germplasm collection for yield, yield components, and genotype × environment interactions

Kaiser, C. M., Clark, L. V., Juvik, J. A., Voigt, T. B. & Sacks, E. J., Sep 1 2015, In : Crop Science. 55, 5, p. 1978-1994 17 p.

Research output: Contribution to journalArticle

Miscanthus
genotype-environment interaction
germplasm conservation
yield components
Miscanthus giganteus

Cold-tolerance of Miscanthus seedlings and effects of spring and autumn frosts on mature clonally replicated cultivars

Kaiser, C. M. & Sacks, E. J., Sep 1 2015, In : Crop Science. 55, 5, p. 2401-2415 15 p.

Research output: Contribution to journalArticle

Miscanthus
cold tolerance
autumn
seedlings
cultivars

DNA markers for identifying interspecific hybrids between Miscanthus sacchariflorus and Miscanthus sinensis

Tamura, K. I., Sanada, Y., Shoji, A., Okumura, K., Uwatoko, N., Anzoua, K. G., Sacks, E. J. & Yamada, T., Sep 1 2015, In : Grassland Science. 61, 3, p. 160-166 7 p.

Research output: Contribution to journalArticle

Miscanthus sacchariflorus
Miscanthus sinensis
DNA
genetic markers
polymerase chain reaction

Genetic variation in Miscanthus × giganteus and the importance of estimating genetic distance thresholds for differentiating clones

Głowacka, K., Clark, L. V., Adhikari, S., Peng, J., Stewart, J. R., Nishiwaki, A., Yamada, T., Jørgensen, U., Hodkinson, T. R., Gifford, J., Juvik, J. A. & Sacks, E. J., Mar 1 2015, In : GCB Bioenergy. 7, 2, p. 386-404 19 p.

Research output: Contribution to journalArticle

Miscanthus giganteus
genetic distance
genetic variation
clone
cultivar
2014

A footprint of past climate change on the diversity and population structure of Miscanthus sinensis

Clark, L. V., Brummer, J. E., Głowacka, K., Hall, M. C., Heo, K., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Jan 1 2014, In : Annals of Botany. 114, 1, p. 97-107 11 p.

Research output: Contribution to journalArticle

Miscanthus sinensis
carbon footprint
population structure
Miscanthus
China

Plant morphology, genome size, and SSR markers differentiate five distinct taxonomic groups among accessions in the genus Miscanthus

Chae, W. B., Hong, S. J., Gifford, J. M., Rayburn, A. L., Sacks, E. J. & Juvik, J. A., Nov 1 2014, In : GCB Bioenergy. 6, 6, p. 646-660 15 p.

Research output: Contribution to journalArticle

Miscanthus
plant morphology
Polymorphism
polymorphism
Miscanthus sacchariflorus

Variation in chilling tolerance for photosynthesis and leaf extension growth among genotypes related to the C4 grass Miscanthus ×giganteus

Głowacka, K., Adhikari, S., Peng, J., Gifford, J., Juvik, J. A., Long, S. P. & Sacks, E. J., Oct 1 2014, In : Journal of experimental botany. 65, 18, p. 5267-5278 12 p.

Research output: Contribution to journalArticle

Miscanthus giganteus
Photosynthesis
Poaceae
cold tolerance
Genotype
2013

Antisense-overexpression of the MsCOMT gene induces changes in lignin and total phenol contents in transgenic tobacco plants

Seong, E. S., Yoo, J. H., Lee, J. G., Kim, H. Y., Hwang, I. S., Heo, K., Kim, J. K., Lim, J. D., Sacks, E. J. & Yu, C. Y., Feb 1 2013, In : Molecular Biology Reports. 40, 2, p. 1979-1986 8 p.

Research output: Contribution to journalArticle

caffeate O-methyltransferase
Lignin
Genetically Modified Plants
Phenol
Tobacco

Transient overexpression of the Miscanthus sinensis glucose-6-phosphate isomerase gene (MsGPI) in Nicotiana benthamiana enhances expression of genes related to antioxidant metabolism

Seong, E. S., Yoo, J. H., Lee, J. G., Kim, H. Y., Hwang, I. S., Heo, K., Lim, J. D., Lee, D., Sacks, E. J. & Yu, C. Y., Sep 1 2013, In : Plant OMICS. 6, 6, p. 408-414 7 p.

Research output: Contribution to journalArticle

glucose-6-phosphate isomerase
Miscanthus sinensis
Nicotiana benthamiana
antioxidants
gene expression
2012

SSR-based genetic maps of Miscanthus sinensis and M. sacchariflorus, and their comparison to sorghum

Kim, C., Zhang, D., Auckland, S. A., Rainville, L. K., Jakob, K., Kronmiller, B., Sacks, E. J., Deuter, M. & Paterson, A. H., Jan 24 2012, In : Theoretical and Applied Genetics. 124, 7, p. 1325-1338 14 p.

Research output: Contribution to journalArticle

Miscanthus sacchariflorus
Miscanthus sinensis
Sorghum
Sorghum (Poaceae)
Miscanthus
2010

Photosynthetic characteristics in Oryza species

Zhao, M., Ding, Z., Lafitte, R., Sacks, E. J., Dimayuga, G. & Holt, D., Aug 24 2010, In : Photosynthetica. 48, 2, p. 234-240 7 p.

Research output: Contribution to journalArticle

Oryza
Genome
Tetraploidy
genome
Solar System
2009

Assessing genetic diversity in Gossypium arboreum L. cultivars using genomic and EST-derived microsatellites

Kantartzi, S. K., Ulloa, M., Sacks, E. J. & Stewart, J. M. D., May 1 2009, In : Genetica. 136, 1, p. 141-147 7 p.

Research output: Contribution to journalArticle

Gossypium arboreum
Gossypium
Expressed Sequence Tags
Microsatellite Repeats
microsatellite repeats

Identification and genomic location of a reniform nematode (Rotylenchulus reniformis) resistance locus (Ren ari ) introgressed from Gossypium aridum into upland cotton (G. hirsutum)

Romano, G. B., Sacks, E. J., Stetina, S. R., Robinson, A. F., Fang, D. D., Gutierrez, O. A. & Scheffler, J. A., Jan 1 2009, In : Theoretical and Applied Genetics. 120, 1, p. 139-150 12 p.

Research output: Contribution to journalArticle

Rotylenchulus reniformis
Gossypium
Dominant Genes
Gossypium hirsutum
Nematoda
Gossypium arboreum
Rotylenchulus reniformis
Gossypium
introgression
Gossypium hirsutum
2008
Gossypium arboreum
Ovule
Gossypium
Germination
Gossypium hirsutum

Perennial hybrids of Oryza sativa × Oryza rufipogon. Part II. Carbon exchange and assimilate partitioning

Zhao, M., Acuña, T. L. B., Lafitte, H. R., Dimayuga, G. & Sacks, E. J., Mar 20 2008, In : Field Crops Research. 106, 3, p. 214-223 10 p.

Research output: Contribution to journalArticle

Oryza rufipogon
Oryza sativa
partitioning
carbon
flowering

Perennial O. sativa × O. rufipogon interspecific hybrids: I. Photosynthetic characteristics and their inheritance

Zhao, M., Lafitte, H. R., Sacks, E. J., Dimayuga, G. & Acuña, T. L. B., Mar 20 2008, In : Field Crops Research. 106, 3, p. 203-213 11 p.

Research output: Contribution to journalArticle

inheritance (genetics)
Oryza rufipogon
leaf area
Oryza
leaves
2007

Clonal performance of perennial Oryza sativa/O. rufipogon selections and their combining ability with O. sativa cultivars for survival, stolon production and yield

Sacks, E. J., Dhanapala, M. P., Sta. Cruz, M. T. & Sallan, R., Feb 1 2007, In : Field Crops Research. 100, 2-3, p. 155-167 13 p.

Research output: Contribution to journalArticle

Oryza rufipogon
cultivar
Oryza sativa
cultivars
highlands
2006

Breeding for perennial growth and fertility in an Oryza sativa/O. longistaminata population

Sacks, E. J., Dhanapala, M. P., Tao, D. Y., Sta. Cruz, M. T. & Sallan, R., Jan 8 2006, In : Field Crops Research. 95, 1, p. 39-48 10 p.

Research output: Contribution to journalArticle

Oryza longistaminata
fertility
Oryza sativa
genotype
breeding

Fertility in an interspecific rice population and its effect on selection for rhizome length

Sacks, E. J., Schmit, V., McNally, K. L. & Sta. Cruz, M. T., Jan 8 2006, In : Field Crops Research. 95, 1, p. 30-38 9 p.

Research output: Contribution to journalArticle

rhizome
rhizomes
fertility
rice
Oryza longistaminata
2005

Resistance in Lycopersicon esculentum intraspecific crosses to race T1 strains of Xanthomonas campestris pv. vesicatoria causing bacterial spot of tomato

Yang, W., Sacks, E. J., Lewis Ivey, M. L., Miller, S. A. & Francis, D. M., May 1 2005, In : Phytopathology. 95, 5, p. 519-527 9 p.

Research output: Contribution to journalArticle

Xanthomonas vesicatoria
Solanum lycopersicum var. lycopersicum
tomatoes
loci
chromosomes
2003

Convergent evolution of perenniality in rice and sorghum

Hu, F. Y., Tao, D. Y., Sacks, E. J., Fu, B. Y., Xu, P., Li, J., Yang, Y., McNally, K., Khush, G. S., Paterson, A. H. & Li, Z. K., Apr 1 2003, In : Proceedings of the National Academy of Sciences of the United States of America. 100, 7, p. 4050-4054 5 p.

Research output: Contribution to journalArticle

Sorghum
Poaceae
Quantitative Trait Loci
Rhizome
Genes

Developing perennial upland rice I: Field performance of Oryza sativa/O. rufipogon F1, F4, and BC1F4 progeny

Sacks, E. J., Roxas, J. P. & Maria, M. T., Jan 1 2003, In : Crop Science. 43, 1, p. 120-128 9 p.

Research output: Contribution to journalArticle

Oryza rufipogon
Oryza sativa
highlands
rice
ratooning

Developing perennial upland rice II: Field performance of S1 families from an intermated Oryza sativa/O. longistaminata population

Sacks, E. J., Roxas, J. P. & Maria, M. T., Jan 1 2003, In : Crop Science. 43, 1, p. 129-134 6 p.

Research output: Contribution to journalArticle

Oryza longistaminata
Oryza sativa
highlands
rice
South East Asia
2001
Lycopersicon esculentum
breeding lines
Breeding
Fruit
Color
1998

Variation among seven genotypes of Lycopersicon esculentum and 36 accessions of L. hirsutum for interspecific crossability

Sacks, E. J. & St. Clair, D. A., Jan 1 1998, In : Euphytica. 101, 2, p. 185-191 7 p.

Research output: Contribution to journalArticle

Solanum habrochaites
Lycopersicon esculentum
Solanum lycopersicum var. lycopersicum
Fruit
Genotype
1997

Variation among 41 genotypes of tomato (Lycopersicon esculentum Mill.) for Crossability to L. peruvianum (L.) Mill.

Sacks, E. J., Gerhardt, L. M., Graham, E. B., Jacobs, J., Thorrup, T. A. & St. Clair, D. A., Jan 1 1997, In : Annals of Botany. 80, 4, p. 469-477 9 p.

Research output: Contribution to journalArticle

Solanum peruvianum
Solanum lycopersicum var. lycopersicum
tomatoes
genotype
fruits
1996

Cryogenic Storage of tomato pollen: Effect on fecundity

Sacks, E. J. & St. Clair, D. A., Jun 1996, In : HortScience. 31, 3, p. 447-448 2 p.

Research output: Contribution to journalArticle

fecundity
tomatoes
pollen
fruit set
Solanum lycopersicum var. lycopersicum
1995
raw fruit
breeding value
strawberries
color