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Research Output 1980 2019

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2019

A tale of two genes: Divergent evolutionary fate of haptoglobin and hemopexin in hemoglobinless Antarctic icefishes

Bilyk, K. T., Zhuang, X., Murphy, K. R. & Cheng-De Vries, C-H. C., Jan 1 2019, In : Journal of Experimental Biology. 222, 6, jeb188573.

Research output: Contribution to journalArticle

Open Access
Hemopexin
Haptoglobins
haptoglobins
hemoglobin
Hemoglobins

Cytogenetic characterization of the Antarctic silverfish Pleuragramma antarctica (Boulenger 1902) through analysis of mitotic chromosomes from early larvae

Ghigliotti, L., Cheng, C. H. C., Ozouf-Costaz, C., Guidi-Rontani, C., Vacchi, M., Federici, S. & Pisano, E., Jan 1 2019, (Accepted/In press) In : Marine Genomics. 100737.

Research output: Contribution to journalArticle

cytogenetics
Cytogenetics
Larva
chromosome
Chromosomes
Open Access
Antifreeze Proteins
Genes
Open Reading Frames
Parturition
Frameshift Mutation

The genomic basis for colonizing the freezing Southern Ocean revealed by Antarctic toothfish and Patagonian robalo genomes

Chen, L., Lu, Y., Li, W., Ren, Y., Yu, M., Jiang, S., Fu, Y., Wang, J., Peng, S., Bilyk, K. T., Murphy, K. R., Zhuang, X., Hune, M., Zhai, W., Wang, W., Xu, Q. & Cheng, C. H. C., Apr 1 2019, In : GigaScience. 8, 4

Research output: Contribution to journalArticle

Open Access
Freezing
Oceans and Seas
Genes
Genome
Proteins
2018

Controlling Liquid–Liquid Phase Separation of Cold-Adapted Crystallin Proteins from the Antarctic Toothfish

Bierma, J. C., Roskamp, K. W., Ledray, A. P., Kiss, A. J., Cheng, C. H. C. & Martin, R. W., Dec 7 2018, In : Journal of Molecular Biology. 430, 24, p. 5151-5168 18 p.

Research output: Contribution to journalArticle

Crystallins
Crystalline Lens
Proteins
Cataract
Hot Temperature

Metagenomic sequencing of environmental DNA reveals marine faunal assemblages from the West Antarctic Peninsula

Cowart, D. A., Murphy, K. R. & Cheng, C. H. C., Feb 2018, In : Marine Genomics. 37, p. 148-160 13 p.

Research output: Contribution to journalArticle

Metagenomics
DNA Sequence Analysis
Biodiversity
Firearms
DNA

Reconstruction of the repetitive antifreeze glycoprotein genomic loci in the cold-water gadids Boreogadus saida and Microgadus tomcod

Zhuang, X., Murphy, K. R., Ghigliotti, L., Pisano, E. & Cheng-De Vries, C-H. C., Jun 2018, In : Marine Genomics. 39, p. 73-84 12 p.

Research output: Contribution to journalArticle

Antifreeze Proteins
cold water
genomics
chromosome
Bacterial Artificial Chromosomes
2017

Antarctic fish versus human cytoglobins – The same but yet so different

Cuypers, B., Vermeylen, S., Hammerschmid, D., Trashin, S., Rahemi, V., Konijnenberg, A., De Schutter, A., Cheng, C. H. C., Giordano, D., Verde, C., De Wael, K., Sobott, F., Dewilde, S. & Van Doorslaer, S., Aug 1 2017, In : Journal of Inorganic Biochemistry. 173, p. 66-78 13 p.

Research output: Contribution to journalArticle

Fish
Fishes
Heme
Disulfides
Paramagnetic resonance

Diversity and biogeography of larval and juvenile notothenioid fishes in McMurdo Sound, Antarctica

Murphy, K. R., Kalmanek, E. A. & Cheng, C. H. C., Jan 1 2017, In : Polar Biology. 40, 1, p. 161-176 16 p.

Research output: Contribution to journalArticle

Antarctica
biogeography
Oceans and Seas
Larva
fish
2016

Sex determination in Antarctic notothenioid fish: chromosomal clues and evolutionary hypotheses

Ghigliotti, L., Cheng, C. H. C. & Pisano, E., Jan 1 2016, In : Polar Biology. 39, 1, p. 11-22 12 p.

Research output: Contribution to journalArticle

Sex Chromosomes
Fishes
Sex Determination Processes
gender
fish
2015

Cytogenetic diversity of notothenioid fish from the Ross sea: historical overview and updates

Ghigliotti, L., Cheng, C. C. H., Ozouf-Costaz, C., Vacchi, M. & Pisano, E., Nov 1 2015, In : Hydrobiologia. 761, 1, p. 373-396 24 p.

Research output: Contribution to journalArticle

cytogenetics
fish
genome
ecological value
karyotyping

Multiple independent reduction or loss of antifreeze trait in low Antarctic and sub-Antarctic notothenioid fishes

Miya, T., Gon, O., Mwale, M. & Cheng-De Vries, C-H. C., Sep 16 2015, In : Antarctic Science. 28, 1, p. 17-28 12 p.

Research output: Contribution to journalArticle

fish
genotype
Falkland Islands
phenotype
Esox
2014
Antifreeze Proteins
Ice
Freezing
Fishes
Temperature
Nototheniidae
RNA Sequence Analysis
body temperature
Body Temperature
RNA
2013

In situ gene mapping of two genes supports independent evolution of sex chromosomes in cold-adapted antarctic fish

Ghigliotti, L., Cheng, C. H. C., Bonillo, C., Coutanceau, J. P. & Pisano, E., Mar 15 2013, In : BioMed Research International. 2013, 243938.

Research output: Contribution to journalArticle

Sex Chromosomes
Chromosome Mapping
Antifreeze Proteins
Chromosomes
Fish
Extreme Cold
Transcriptome
Fishes
Gene Expression
Hot Temperature

The effect of habitat temperature on serum antifreeze glycoprotein (AFGP) activity in Notothenia rossii (Pisces: Nototheniidae) in the Southern Ocean

Miya, T., Gon, O., Mwale, M. & Christina Cheng, C. H., Jan 1 2013, In : Polar Biology. 37, 3, p. 367-373 7 p.

Research output: Contribution to journalArticle

Antifreeze Proteins
Nototheniidae
Pisces
blood serum
Oceans and Seas
2012

Biophysical Characterisation of Neuroglobin of the Icefish, a Natural Knockout for Hemoglobin and Myoglobin. Comparison with Human Neuroglobin

Giordano, D., Boron, I., Abbruzzetti, S., van Leuven, W., Nicoletti, F. P., Forti, F., Bruno, S., Cheng, C. H. C., Moens, L., di Prisco, G., Nadra, A. D., Estrin, D., Smulevich, G., Dewilde, S., Viappiani, C. & Verde, C., Dec 3 2012, In : PloS one. 7, 12, e44508.

Research output: Contribution to journalArticle

myoglobin
Myoglobin
hemoglobin
Hemoglobins
Fish

Exploring the diversity of Arctic eelpouts: First cytogenetic data on species of the genus Lycodes (Teleostei, Zoarcidae)

Ghigliotti, L., Møller, P. R., Cheng-De Vries, C-H. C., Christiansen, J. S., Fevolden, S. E. & Pisano, E., Dec 1 2012, In : Marine Genomics. 8, p. 35-41 7 p.

Research output: Contribution to journalArticle

cytogenetics
Karyotype
Cytogenetics
karyotyping
Arctic region

Karyotyping and cytogenetic mapping of Atlantic cod (Gadus morhua Linnaeus, 1758)

Ghigliotti, L., Fevolden, S. E., Cheng-De Vries, C-H. C., Babiak, I., Dettai, A. & Pisano, E., Dec 2012, In : Animal Genetics. 43, 6, p. 746-752 7 p.

Research output: Contribution to journalArticle

Gadus morhua
Karyotyping
cytogenetics
Cytogenetics
karyotyping

Phylogenetic footprints of an Antarctic radiation: The Trematominae (Notothenioidei, Teleostei)

Lautrédou, A. C., Hinsinger, D. D., Gallut, C., Cheng, C. H. C., Berkani, M., Ozouf-Costaz, C., Cruaud, C., Lecointre, G. & Dettai, A., Oct 1 2012, In : Molecular Phylogenetics and Evolution. 65, 1, p. 87-101 15 p.

Research output: Contribution to journalArticle

footprint
Haplotypes
haplotypes
Radiation
phylogenetics

Protein genes in repetitive sequence-antifreeze glycoproteins in Atlantic cod genome

Zhuang, X., Yang, C., Fevolden, S. E. & Cheng, C. H. C., Jul 2 2012, In : BMC genomics. 13, 1, 293.

Research output: Contribution to journalArticle

Antifreeze Proteins
Gadus morhua
Nucleic Acid Repetitive Sequences
Genome
Proteins
2011

Assembly of the antifreeze glycoprotein/trypsinogen-like protease genomic locus in the Antarctic toothfish Dissostichus mawsoni (Norman)

Nicodemus-Johnson, J., Silic, S., Ghigliotti, L., Pisano, E. & Cheng, C. H. C., Sep 1 2011, In : Genomics. 98, 3, p. 194-201 8 p.

Research output: Contribution to journalArticle

Antifreeze Proteins
Trypsinogen
Peptide Hydrolases
Oceans and Seas
Haplotypes

Structure and dynamics of Antarctic fish neuroglobin assessed by computer simulations

Boron, I., Russo, R., Boechi, L., Cheng-De Vries, C-H. C., Di Prisco, G., Estrin, D. A., Verde, C. & Nadra, A. D., Mar 1 2011, In : IUBMB Life. 63, 3, p. 206-213 8 p.

Research output: Contribution to journalArticle

Computer Simulation
Fish
Fishes
Computer simulation
Hemeproteins
2010

A gene family-based method for interspecies comparisons of sequencing-based transcriptomes and its use in environmental adaptation analysis

Chen, Z., Ye, H., Zhou, L., Cheng-De Vries, C-H. C. & Chen, L., Mar 1 2010, In : Journal of Genetics and Genomics. 37, 3, p. 205-218 14 p.

Research output: Contribution to journalArticle

Transcriptome
Expressed Sequence Tags
Genes
Fishes
Gene Ontology

Evolution of an antifreeze protein by neofunctionalization under escape from adaptive conflict

Deng, C., Cheng, C. H. C., Ye, H., He, X. & Chen, L., Dec 14 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 50, p. 21593-21598 6 p.

Research output: Contribution to journalArticle

Antifreeze Proteins
Genes
Ice
Type III Antifreeze Proteins
Duplicate Genes

ND6 Gene "lost" and found: Evolution of mitochondrial gene rearrangement in antarctic notothenioids

Zhuang, X. & Cheng, C. H. C., Jun 3 2010, In : Molecular biology and evolution. 27, 6, p. 1391-1403 13 p.

Research output: Contribution to journalArticle

NADH Dehydrogenase
Mitochondrial Genes
NADH dehydrogenase
Gene Rearrangement
gene

Small-angle X-ray scattering studies of the intact eye lens: Effect of crystallin composition and concentration on microstructure

Mirarefi, A. Y., Boutet, S., Ramakrishnan, S., Kiss, A. J., Cheng, C. H. C., DeVries, A. L., Robinson, I. K. & Zukoski, C. F., Jun 1 2010, In : Biochimica et Biophysica Acta - General Subjects. 1800, 6, p. 556-564 9 p.

Research output: Contribution to journalArticle

Crystalline Lens
Crystallins
X ray scattering
Lenses
X-Rays
2008

Adaptive evolution of hepcidin genes in antarctic notothenioid fishes

Xu, Q., Cheng, C. H. C., Hu, P., Ye, H., Chen, Z., Cao, L., Chen, L., Shen, Y. & Chen, L., Jun 1 2008, In : Molecular biology and evolution. 25, 6, p. 1099-1112 14 p.

Research output: Contribution to journalArticle

Hepcidins
teleost
peptide
gene
fish
Crystalline Lens
Crystallins
Lenses
Genes
Methionine
Mitochondrial Genes
Fishes
phylogenetics
mitochondrial DNA
nucleotide sequences

Transcriptomic and genomic evolution under constant cold in Antarctic notothenioid fish

Chen, Z., Cheng, C. H. C., Zhang, J., Cao, L., Chen, L., Zhou, L., Jin, Y., Ye, H., Deng, C., Dai, Z., Xu, Q., Hu, P., Sun, S., Shen, Y. & Chen, L., Sep 2 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 35, p. 12944-12949 6 p.

Research output: Contribution to journalArticle

Fishes
Freezing
Proteins
Up-Regulation
Antifreeze Proteins
2007

Molecular ecophysiology of Antarctic notothenioid fishes

Cheng, C. H. C. & Detrich, H. W., Dec 29 2007, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 362, 1488, p. 2215-2232 18 p.

Research output: Contribution to journalArticle

Antifreeze Proteins
ecophysiology
Fish
Globins
Genes

The two giant sister species of the Southern Ocean, Dissostichus eleginoides and Dissostichus mawsoni, differ in karyotype and chromosomal pattern of ribosomal RNA genes

Ghigliotti, L., Mazzei, F., Ozouf-Costaz, C., Bonillo, C., Williams, R., Cheng-De Vries, C-H. C. & Pisano, E., Apr 1 2007, In : Polar Biology. 30, 5, p. 625-634 10 p.

Research output: Contribution to journalArticle

Ribosomal DNA
Karyotype
rRNA Genes
Oceans and Seas
karyotyping
2006

A new species of nototheniid (Perciformes: Notothenioidei) fish from McMurdo Sound, Antarctica

Cziko, P. A. & Cheng-De Vries, C-H. C., Dec 20 2006, In : Copeia. 4, p. 752-759 8 p.

Research output: Contribution to journalArticle

Perciformes
Antarctica
new species
body fluid
size at maturity

Freezing resistance of antifreeze-deficient larval Antarctic fish

Cziko, P. A., Evans, C. W., Cheng-De Vries, C-H. C. & DeVries, A. L., Feb 1 2006, In : Journal of Experimental Biology. 209, 3, p. 407-420 14 p.

Research output: Contribution to journalArticle

Antifreeze Proteins
Freezing
freezing
Fishes
protein

Isolation and some characterisation of antifreeze protein from the European eelpout Zoarces viviparus

Sørensen, T. F., Cheng, C. H. C. & Ramløv, H., Nov 1 2006, In : Cryo-Letters. 27, 6, p. 387-399 13 p.

Research output: Contribution to journalArticle

Antifreeze Proteins
Type III Antifreeze Proteins
Osmolar Concentration
Buffers
osmolality

Metabolic energy utilization during development of Antarctic naked dragonfish (Gymnodraco acuticeps)

Evans, C. W., Pace, L., Cziko, P. A., Marsh, A. G., Cheng-De Vries, C-H. C. & Devries, A. L., May 1 2006, In : Polar Biology. 29, 6, p. 519-525 7 p.

Research output: Contribution to journalArticle

Respiratory Rate
respiratory rate
fertilization (reproduction)
Fertilization
Eggs
Antifreeze Proteins
Freezing
Fishes
Liver
Ice
2005

Adaptations to an extreme environment: Retinal organisation and spectral properties of photoreceptors in Antarctic notothenioid fish

Pointer, M. A., Cheng, C. H. C., Bowmaker, J. K., Parry, J. W. L., Soto, N., Jeffery, G., Cowing, J. A. & Hunt, D. M., Jun 1 2005, In : Journal of Experimental Biology. 208, 12, p. 2363-2376 14 p.

Research output: Contribution to journalArticle

Opsins
opsin
photoreceptors
retina
Retina

Characterization of a multimer type III antifreeze protein gene from the Antarctic eel pout(Lycodichthys dearborni)

Yu, J., Cheng-De Vries, C-H. C., DeVries, A. L. & Chen, L. B., Aug 1 2005, In : Acta Genetica Sinica. 32, 8, p. 789-794 6 p.

Research output: Contribution to journalArticle

Type III Antifreeze Proteins
Antifreeze Proteins
Eels
Polyproteins
Fishes

Spawning behaviour and early development in the naked dragonfish Gymnodraco acuticeps

Evans, C. W., Cziko, P., Cheng, C. H. C. & Devries, A. L., Sep 1 2005, In : Antarctic Science. 17, 3, p. 319-327 9 p.

Research output: Contribution to journalArticle

hatching
early development
spawning
aquarium
larva
2004

Cold-stable eye lens crystallins of the Antarctic nototheniid toothfish Dissostichus mawsoni Norman

Kiss, A. J., Mirarefi, A. Y., Ramakrishnan, S., Zukoski, C. F., DeVries, A. L. & Cheng, C. H. C., Dec 1 2004, In : Journal of Experimental Biology. 207, 26, p. 4633-4649 17 p.

Research output: Contribution to journalArticle

eye lens
crystallins
Crystalline Lens
Crystallins
Lens
Perciformes
Mitochondrial Genes
Mitochondrial DNA
rRNA Genes
Fishes
2003

Annual warming episodes in seawater temperatures in McMurdo Sound in relationship to endogenous ice in notothenioid fish

Hunt, B. M., Hoefling, K. & Cheng-De Vries, C-H. C., Sep 2003, In : Antarctic Science. 15, 3, p. 333-338 6 p.

Research output: Contribution to journalArticle

ice
seawater
warming
fish
temperature

Functional Antifreeze Glycoprotein Genes in Temperate-Water New Zealand Nototheniid Fish Infer an Antarctic Evolutionary Origin

Cheng, C. H. C., Chen, L., Near, T. J. & Jin, Y., Nov 1 2003, In : Molecular biology and evolution. 20, 11, p. 1897-1908 12 p.

Research output: Contribution to journalArticle

Antifreeze Proteins
Nototheniidae
New Zealand
Fishes
Water

Mitochondrial DNA, morphology, and the phylogenetic relationships of Antarctic icefishes (Notothenioidei: Channichthyidae)

Near, T. J., Pesavento, J. J. & Cheng, C. H. C., Jul 1 2003, In : Molecular Phylogenetics and Evolution. 28, 1, p. 87-98 12 p.

Research output: Contribution to journalArticle

Mitochondrial DNA
mitochondrial DNA
phylogenetics
phylogeny
Phylogeny

Protein translocation across the endoplasmic reticulum membrane in cold-adapted organisms

Römisch, K., Collie, N., Soto, N., Logue, J., Lindsay, M., Scheper, W. & Cheng, C. H. C., Jul 15 2003, In : Journal of cell science. 116, 14, p. 2875-2883 9 p.

Research output: Contribution to journalArticle

Protein Transport
Endoplasmic Reticulum
Fishes
Membranes
Microsomes

The refined crystal structure of an eel pout type III antifreeze protein RD1 at 0.62-Å resolution reveals structural microheterogeneity of protein and solvation

Ko, T. P., Robinson, H., Gao, Y. G., Cheng, C. H. C., DeVries, A. L. & Wang, A. H. J., Feb 1 2003, In : Biophysical journal. 84, 2 I, p. 1228-1237 10 p.

Research output: Contribution to journalArticle

Type III Antifreeze Proteins
Eels
Ice
Hydrogen
Fishes
1999

Evolution of an antifreeze glycoprotein

Cheng-De Vries, C-H. C. & Chen, L., Sep 30 1999, In : Nature. 401, 6752, p. 443-444 2 p.

Research output: Contribution to journalArticle

Antifreeze Proteins
Trypsinogen
Perciformes
Polyproteins
Molecular Evolution