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Research Output 2001 2019

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Article
2019

Bacterial cyclopropane fatty acid synthase mRNA is targeted by activating and repressing small RNAs

Bianco, C. M., Fröhlich, K. S. A. & Vanderpoola, C. K., Oct 1 2019, In : Journal of bacteriology. 201, 19, e00461-19.

Research output: Contribution to journalArticle

Open Access
RNA
Messenger RNA
5' Untranslated Regions
Membrane Lipids
Membrane Proteins
Open Access
Coliphages
Prophages
Escherichia coli Infections
Bacteriophages
Membrane Proteins

Determinants of target prioritization and regulatory hierarchy for the bacterial small RNA SgrS

Bobrovskyy, M., Azam, M. S., Frandsen, J. K., Zhang, J., Poddar, A., Ma, X., Henkin, T. M., Ha, T. & Vanderpool, C. K., Oct 1 2019, In : Molecular Microbiology. 112, 4, p. 1199-1218 20 p.

Research output: Contribution to journalArticle

Bacterial RNA
RNA
Regulon
Messenger RNA
Physiological Stress

Oxygen-dependent regulation of SPI1 type three secretion system by small RNAs in Salmonella enterica serovar Typhimurium

Kim, K., Golubeva, Y. A., Vanderpool, C. & Slauch, J. M., Mar 2019, In : Molecular Microbiology. 111, 3, p. 570-587 18 p.

Research output: Contribution to journalArticle

Genomic Islands
Salmonella enterica
Salmonella
RNA
Oxygen
Bacterial RNA
RNA
Messenger RNA
Bacterial Genomes
Regulon
Genomic Islands
Salmonella enterica
Salmonella
RNA
Epithelial Cells
2018

Dual-function RNAs

Raina, M., King, A., Bianco, C. & Vanderpool, C. K., Oct 1 2018, In : Microbiology Spectrum. 6, 5, RWR-0032-2018.

Research output: Contribution to journalArticle

RNA
Biological Phenomena
Base Pairing
biological processes
protein

Translational regulation by bacterial small RNAs via an unusual Hfq-dependent mechanism

Azam, M. S. & Vanderpool, C. K., Jan 1 2018, In : Nucleic acids research. 46, 5, p. 2585-2599 15 p.

Research output: Contribution to journalArticle

Bacterial RNA
RNA
Ribosomes
Binding Sites
Bacteria
2017

The small protein SgrT controls transport activity of the glucose-specific phosphotransferase system

Lloyd, C. R., Park, S., Fei, J. & Vanderpool, C. K., Jun 1 2017, In : Journal of bacteriology. 199, 11, e00869-16.

Research output: Contribution to journalArticle

Phosphotransferases
Glucose
Sugar Phosphates
Proteins
Base Pairing
2016

A Prophage-Encoded Small RNA Controls Metabolism and Cell Division in Escherichia coli

Balasubramanian, D., Ragunathan, P. T., Fei, J. & Vanderpool, C. K., Jan 1 2016, In : mSystems. 1, 1, e00021-15.

Research output: Contribution to journalArticle

Prophages
Cell Division
RNA
Metabolism
Escherichia coli

Diverse mechanisms of post-transcriptional repression by the small RNA regulator of glucose-phosphate stress

Bobrovskyy, M. & Vanderpool, C. K., Jan 1 2016, In : Molecular Microbiology. 99, 2, p. 254-273 20 p.

Research output: Contribution to journalArticle

Phosphates
RNA
Glucose
Messenger RNA
Physiological Stress
2015

Determination of in vivo target search kinetics of regulatory noncoding RNA

Fei, J., Singh, D., Zhang, Q., Park, S., Balasubramanian, D., Golding, I., Vanderpool, C. & Ha, T., Mar 20 2015, In : Science. 347, 6228, p. 1371-1374 4 p.

Research output: Contribution to journalArticle

Untranslated RNA
Messenger RNA
Base Pairing
Bacterial RNA
Biological Phenomena

Small RNAs regulate primary and secondary metabolism in gram-negative bacteria

Bobrovskyy, M., Vanderpool, C. K. & Richards, G. R., Jan 1 2015, In : Microbiology Spectrum. 3, 3, MBP-0009-2014.

Research output: Contribution to journalArticle

Secondary Metabolism
Gram-Negative Bacteria
RNA
metabolism
bacterium

Talk among yourselves: RNA sponges mediate cross talk between functionally related messenger RNAs

Azam, M. S. & Vanderpool, C. K., Jun 3 2015, In : EMBO Journal. 34, 11, p. 1436-1438 3 p.

Research output: Contribution to journalArticle

Porifera
RNA
Messenger RNA
Bacterial RNA
Salmonella
2013

Computational analysis of bacterial RNA-Seq data

McClure, R., Balasubramanian, D., Sun, Y., Bobrovskyy, M., Sumby, P., Genco, C. A., Vanderpool, C. K. & Tjaden, B., Aug 1 2013, In : Nucleic acids research. 41, 14, p. e140

Research output: Contribution to journalArticle

Bacterial RNA
RNA Sequence Analysis
Transcriptome
Neisseria gonorrhoeae
Gene Expression Profiling

Deciphering the interplay between two independent functions of the small RNA regulator SgrS in Salmonella

Balasubramanian, D. & Vanderpool, C. K., Oct 18 2013, In : Journal of bacteriology. 195, 20, p. 4620-4630 11 p.

Research output: Contribution to journalArticle

Salmonella
Base Pairing
RNA
Growth
Alleles

Depletion of glycolytic intermediates plays a key role in glucose-phosphate stress in escherichia coli

Richards, G. R., Patel, M. V., Lloyd, C. R. & Vanderpool, C., Oct 28 2013, In : Journal of bacteriology. 195, 21, p. 4816-4825 10 p.

Research output: Contribution to journalArticle

Phosphates
Glucose-6-Phosphate
Escherichia coli
Glucose
Pyruvic Acid

Physiological consequences of multiple-target regulation by the small RNA SgrS in escherichia coli

Sun, Y. & Vanderpool, C. K., Oct 28 2013, In : Journal of bacteriology. 195, 21, p. 4804-4815 12 p.

Research output: Contribution to journalArticle

RNA
Sugar Phosphates
Escherichia coli
Growth
Messenger RNA

Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis

Papenfort, K., Sun, Y., Miyakoshi, M., Vanderpool, C. K. & Vogel, J., Apr 11 2013, In : Cell. 153, 2, p. 426-437 12 p.

Research output: Contribution to journalArticle

Homeostasis
Chemical activation
RNA
Glucose
Messenger RNA
2012
Regulon
Phosphates
Escherichia coli
Glucose
Growth

Small RNA binding-site multiplicity involved in translational regulation of a polycistronic mRNA

Rice, J. B., Balasubramanian, D. & Vanderpool, C. K., Oct 2 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 40, p. E2691-E2698

Research output: Contribution to journalArticle

Binding Sites
RNA
Messenger RNA
Base Pairing
Bacterial RNA
2011

Regulation and function of Escherichia coli sugar efflux transporter A (setA) during glucose-phosphate stress

Sun, Y. & Vanderpool, C. K., Jan 1 2011, In : Journal of bacteriology. 193, 1, p. 143-153 11 p.

Research output: Contribution to journalArticle

Sensilla
Phosphates
Escherichia coli
Glucosides
Glucose

The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genes

Rice, J. B. & Vanderpool, C. K., May 1 2011, In : Nucleic acids research. 39, 9, p. 3806-3819 14 p.

Research output: Contribution to journalArticle

Sugar Phosphates
Facilitative Glucose Transport Proteins
RNA Stability
RNA
Bacterial RNA
2009

Characterization of homologs of the small rna sgrs reveals diversity in function

Wadler, C. S. & Vanderpool, C. K., Jul 20 2009, In : Nucleic acids research. 37, 16, p. 5477-5485 9 p., gkp591.

Research output: Contribution to journalArticle

RNA
Escherichia coli
Base Pairing
Salmonella typhimurium
Messenger RNA

Homologs of the small RNA SGRS are broadly distributed in enteric bacteria but have diverged in size and sequence

Horler, R. S. P. & Vanderpool, C. K., Jun 16 2009, In : Nucleic acids research. 37, 16, p. 5465-5476 12 p., gkp501.

Research output: Contribution to journalArticle

Enterobacteriaceae
Base Pairing
RNA
Sugar Phosphates
Escherichia coli
2008

Bridges cnd Chasms: Summary of the IMAGE 2 meeting in Montreal, Canada, 30 April to 3 May 2007

Bender, R. A., Downs, D., Kiley, P., LaRossa, R. A., Sonenshein, A. L., Storz, G., Bender, R., Roth, J., Schilling, C., Rine's, J., Merrick, M., Tyson, G., Skovran, E., Liao, J., Stephanopolous', G., Anesiades, N., San, K. Y., Durot, M., Reich, C., De Crecy-Legard, V. & 22 others, Dean's, D., Barras, F., Dwyer, D., De Reuse, H., Massé, E., Hwa, T., Vanderpool, C., Henkin's, T., Warner, D., Ron, E., Gourse, R., Wang, J., Nicholson, W., Burkholder, B., Gon, S., Ellison, M., Savchenko, A., Pichersky, E., Wanner, B., Mori, H., LaRossa, B. & Straight, P., Feb 2008, In : Journal of bacteriology. 190, 3, p. 792-797 6 p.

Research output: Contribution to journalArticle

Bacterial Gene Expression Regulation
Biological Models
Bacterial Proteins
Proteasome Endopeptidase Complex
DNA-Directed RNA Polymerases
2007
Bacterial RNA
Base Pairing
RNA
RNA Stability
Peptides

The novel transcription factor SgrR coordinates the response to glucose-phosphate stress

Vanderpool, C. K. & Gottesman, S., Mar 1 2007, In : Journal of bacteriology. 189, 6, p. 2238-2248 11 p.

Research output: Contribution to journalArticle

Transcription Factors
Clone Cells
Phosphates
Glucose
Binding Sites
2006

Heme transport contributes to in vivo fitness of Bordetella pertussis during primary infection in mice

Brickman, T. J., Vanderpool, C. K. & Armstrong, S. K., Mar 1 2006, In : Infection and immunity. 74, 3, p. 1741-1744 4 p.

Research output: Contribution to journalArticle

Bordetella pertussis
Heme
Infection
Hemin
Whooping Cough

Small RNA regulators and the bacterial response to stress

Gottesman, S., McCullen, C. A., Guillier, M., Vanderpool, C., Majdalani, N., Benhammou, J., Thompson, K. M., FitzGerald, P. C., Sowa, N. A. & FitzGerald, D. J., Dec 1 2006, In : Cold Spring Harbor symposia on quantitative biology. 71, p. 1-11 11 p.

Research output: Contribution to journalArticle

Bacterial RNA
RNA
Bacteria
Bacterial Genomes
Regulon
2005

Effect of RyhB small RNA on global iron use in Escherichia coli

Massé, E., Vanderpool, C. K. & Gottesman, S., Oct 1 2005, In : Journal of bacteriology. 187, 20, p. 6962-6971 10 p.

Research output: Contribution to journalArticle

Iron-Binding Proteins
Operon
Iron
RNA
Escherichia coli
2004
RNA
Glucose
Phosphates
Phosphotransferases
Small Untranslated RNA
2003

Heme-responsive transcriptional activation of Bordetella bhu genes

Vanderpool, C. K. & Armstrong, S. K., Feb 1 2003, In : Journal of bacteriology. 185, 3, p. 909-917 9 p.

Research output: Contribution to journalArticle

Bordetella
Heme
Transcriptional Activation
Bordetella bronchiseptica
Genes
2001

The bordetella bhu locus is required for heme iron utilization

Vanderpool, C. K. & Armstrong, S. K., Jul 4 2001, In : Journal of bacteriology. 183, 14, p. 4278-4287 10 p.

Research output: Contribution to journalArticle

Bordetella
Heme
Iron
Bordetella bronchiseptica
Bordetella pertussis