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Research Output 1992 2020

  • 66 Article
  • 3 Comment/debate
  • 2 Chapter
  • 1 Conference contribution
2020

GeoBioMed sheds new light on human kidney stone crystallization and dissolution

Sivaguru, M., Lieske, J. C., Krambeck, A. E. & Fouke, B. W., Jan 1 2020, In : Nature Reviews Urology. 17, 1

Research output: Contribution to journalComment/debate

Kidney Calculi
Crystallization
2019
Ciprofloxacin
Escherichia coli
antibiotic resistance
Microfluidics
experiment

A dolomitization event at the oceanic chemocline during the Permian-Triassic transition

Gregg, J. M., Kaczmarek, S. E., Bish, D. L., Machel, H. G. & Fouke, B. W., Jan 1 2019, In : Geology. 47, 7, p. e467-e467

Research output: Contribution to journalComment/debate

Open Access
dolomitization
Permian
Triassic

Correction Factors for δ18O-Derived Global Sea Surface Temperature Reconstructions From Diagenetically Altered Intervals of Coral Skeletal Density Banding

Sivaguru, M., Fouke, K. W., Todorov, L., Kingsford, M. J., Fouke, K. E., Trop, J. M. & Fouke, B. W., Jun 18 2019, In : Frontiers in Marine Science. 6, JUN, 306.

Research output: Contribution to journalArticle

Open Access
surface temperature
corals
coral
sea surface temperature
aragonite

Motility of Shewanella oneidensis MR-1 Allows for Nitrate Reduction in the Toxic Region of a Ciprofloxacin Concentration Gradient in a Microfluidic Reactor

Alcalde, R. E., Michelson, K., Zhou, L., Schmitz, E. V., Deng, J., Sanford, R. A., Fouke, B. W. & Werth, C. J., Mar 5 2019, In : Environmental Science and Technology. 53, 5, p. 2778-2787 10 p.

Research output: Contribution to journalArticle

Poisons
motility
Ciprofloxacin
Microfluidics
Nitrates

Re: Geobiology reveals how human kidney stones dissolve in vivo

Sivaguru, M., Saw, J. J., Williams, J. C., Lieske, J. C., Krambeck, A. E., Romero, M. F., Chia, N., Schwaderer, A. L., Alcalde, R. E., Bruce, W. J., Wildman, D. E., Fried, G. A., Werth, C. J., Reeder, R. J., Yau, P. M., Sanford, R. A. & Fouke, B. W., Apr 1 2019, In : Journal of Urology. 201, 4, p. 663-664 2 p.

Research output: Contribution to journalComment/debate

Kidney Calculi
2018
workflow
research process
national park
Metadata
Process model

Geobiology reveals how human kidney stones dissolve in vivo

Sivaguru, M., Saw, J. J., Williams, J. C., Lieske, J. C., Krambeck, A. E., Romero, M. F., Chia, N., Schwaderer, A. L., Alcalde, R. E., Bruce, W. J., Wildman, D. E., Fried, G. A., Werth, C. J., Reeder, R. J., Yau, P. M., Sanford, R. A. & Fouke, B. W., Dec 1 2018, In : Scientific reports. 8, 1, 13731.

Research output: Contribution to journalArticle

Calcium Oxalate
Kidney Calculi
Minerals
Geology
Kidney
2017

Effects of Mineral Surface Properties on Supercritical CO2 Wettability in a Siliciclastic Reservoir

Botto, J., Fuchs, S. J., Fouke, B. W., Clarens, A. F., Freiburg, J. T., Berger, P. M. & Werth, C. J., May 18 2017, In : Energy and Fuels. 31, 5, p. 5275-5285 11 p.

Research output: Contribution to journalArticle

Surface properties
Minerals
Wetting
Contact angle
Surface roughness

Hematite Reduction Buffers Acid Generation and Enhances Nutrient Uptake by a Fermentative Iron Reducing Bacterium, Orenia metallireducens Strain Z6

Dong, Y., Sanford, R. A., Chang, Y. J., McInerney, M. J. & Fouke, B. W., Jan 3 2017, In : Environmental Science and Technology. 51, 1, p. 232-242 11 p.

Research output: Contribution to journalArticle

iron-reducing bacterium
nutrient uptake
hematite
Nutrients
Bacteria

Hydraulic Evaluation of the Design and Operation of Ancient Rome's Anio Novus Aqueduct

Motta, D., Keenan-Jones, D., Garcia, M. H. & Fouke, B. W., Dec 2017, In : Archaeometry. 59, 6, p. 1150-1174 25 p.

Research output: Contribution to journalArticle

water
evaluation
layout
geography
experience
reactive transport
Microfluidics
Rocks
rock
microscopy

Site-based data curation based on hot spring geobiology

Palmer, C. L., Thomer, A. K., Baker, K. S., Wickett, K. M., Hendrix, C. L., Rodman, A., Sigler, S. & Fouke, B. W., Mar 2017, In : PloS one. 12, 3, e0172090.

Research output: Contribution to journalArticle

Hot springs
Hot Springs
hot springs
Natural Springs
Earth system science
2016
Genome
Bacteria
rRNA Operon
Transfer RNA
Genes

Orenia metallireducens sp. nov. strain Z6, a novel metal-reducing member of the phylum firmicutes from the deep subsurface

Dong, Y., Sanford, R. A., Boyanov, M. I., Kemner, K. M., Flynn, T. M., O'Loughlin, E. J., Chang, Y. J., Locke, R. A., Weber, J. R., Egan, S. M., Mackie, R. I., Cann, I. & Fouke, B. W., Jan 1 2016, In : Applied and environmental microbiology. 82, 21, p. 6440-6453 14 p.

Research output: Contribution to journalArticle

Orenia
Firmicutes
Iron
Metals
metals

Proteomic analysis of a poplar cell suspension culture suggests a major role of protein S-acylation in diverse cellular processes

Srivastava, V., Weber, J. R., Malm, E., Fouke, B. W. & Bulone, V., Apr 12 2016, In : Frontiers in Plant Science. 7, APR2016, 477.

Research output: Contribution to journalArticle

acylation
proteomics
cell suspension culture
proteins
cellulose synthase

Tepidibacillus decaturensis sp. nov., a microaerophilic, moderately thermophilic iron-reducing bacterium isolated from 1.7 km depth groundwater

Dong, Y., Sanford, R. A., Boyanov, M. I., Kemner, K. M., Flynn, T. M., O’Loughlin, E. J., Locke, R. A., Weber, J. R., Egan, S. M. & Fouke, B. W., Oct 2016, In : International Journal of Systematic and Evolutionary Microbiology. 66, 10, p. 3964-3971 8 p., 001295.

Research output: Contribution to journalArticle

iron-reducing bacterium
thermophilic bacterium
Groundwater
groundwater
Iron
2015

Metabolism-Induced CaCO3 Biomineralization during Reactive Transport in a Micromodel: Implications for Porosity Alteration

Singh, R., Yoon, H., Sanford, R. A., Katz, L., Fouke, B. W. & Werth, C. J., Oct 20 2015, In : Environmental Science and Technology. 49, 20, p. 12094-12104 11 p.

Research output: Contribution to journalArticle

Biomineralization
biomineralization
reactive transport
Metabolism
Porosity

Travertine-based estimates of the amount of water supplied by ancient Rome's Anio Novus aqueduct

Keenan-Jones, D., Motta, D., Garcia, M. H. & Fouke, B. W., Sep 1 2015, In : Journal of Archaeological Science: Reports. 3, p. 1-10 10 p.

Research output: Contribution to journalArticle

water
lack
Water
Ancient Rome
Travertine
2014

A sense of the earth

Fouke, B. W., Jan 1 2014, An Illinois Sampler: Teaching and Research on the Prairie. Winkelmes, M-A., Burton, A. & Mays, K. (eds.). University of Illinois Press, p. 1-7 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Coral-zooxanthellae meta-transcriptomics reveals integrated response to pollutant stress

Gust, K. A., Najar, F. Z., Habib, T., Lotufo, G. R., Piggot, A. M., Fouke, B. W., Laird, J. G., Wilbanks, M. S., Rawat, A., Indest, K. J., Roe, B. A. & Perkins, E. J., Jul 12 2014, In : BMC genomics. 15, 1, 591.

Research output: Contribution to journalArticle

Anthozoa
Glycolysis
Electron Transport
Taiwan
Energy Metabolism

Halomonas sulfidaeris-dominated microbial community inhabits a 1.8 km-deep subsurface Cambrian sandstone reservoir

Dong, Y., Kumar, C. G., Chia, N., Kim, P. J., Miller, P. A., Price, N. D., Cann, I. K. O., Flynn, T. M., Sanford, R. A., Krapac, I. G., Locke, R. A., Hong, P. Y., Tamaki, H., Liu, W. T., Mackie, R. I., Hernandez, A. G., Wright, C. L., Mikel, M. A., Walker, J. L., Sivaguru, M. & 3 others, Fried, G., Yannarell, A. C. & Fouke, B. W., 2014, In : Environmental Microbiology. 16, 6, p. 1695-1708 14 p.

Research output: Contribution to journalArticle

Halomonas
sandstone
Hydrocarbons
Metabolic Networks and Pathways
microbial communities

Influence of Mg2+ on CaCO3 precipitation during subsurface reactive transport in a homogeneous silicon-etched pore network

Boyd, V., Yoon, H., Zhang, C., Oostrom, M., Hess, N., Fouke, B., Valocchi, A. J. & Werth, C. J., Jun 15 2014, In : Geochimica et Cosmochimica Acta. 135, p. 321-335 15 p.

Research output: Contribution to journalArticle

reactive transport
Calcium Carbonate
Silicon
aragonite
silicon
Coral Reefs
Reefs
Polyps
Optical microscopy
Microscopy

Site based data curation: Developing a data portal for geobiologists at yellowstone National Park

Gordon, S. C., Thomer, A. K., DiLauro, T., Jett, J. G., Fouke, B. W. & Palmer, C. L., Jan 1 2014, In : Proceedings of the ASIST Annual Meeting. 51, 1

Research output: Contribution to journalArticle

national park
Packaging
Demonstrations
Agglomeration
poster

Temperature and injection water source influence microbial community structure in four Alaskan North Slope hydrocarbon reservoirs

Piceno, Y. M., Reid, F. C., Tom, L. M., Conrad, M. E., Bill, M., Hubbard, C. G., Fouke, B. W., Graff, C. J., Han, J., Stringfellow, W. T., Hanlon, J. S., Hu, P., Hazen, T. C. & Andersen, G. L., Jan 1 2014, In : Frontiers in Microbiology. 5, AUG, 00409.

Research output: Contribution to journalArticle

Methane
Hydrocarbons
Sulfates
Injections
Temperature
2013

Building a framework for site-based data curation

Palmer, C. L., Thomer, A. K., Baker, K. S., Wickett, K. M., Varvel, V., Choudhury, S., DiLauro, T., Fouke, B. W. & Asangba, A. E., 2013, In : Proceedings of the ASIST Annual Meeting. 50, 1

Research output: Contribution to journalArticle

Metadata
stakeholder
workflow
Values
Group

Metagenome sequence analysis of filamentous microbial communities obtained from geochemically distinct geothermal channels reveals specialization of three aquificales lineages

Takacs-Vesbach, C., Inskeep, W. P., Jay, Z. J., Herrgard, M. J., Rusch, D. B., Tringe, S. G., Kozubal, M. A., Hamamura, N., Macur, R. E., Fouke, B. W., Reysenbach, A. L., McDermott, T. R., Jennings, R. D. M., Hengartner, N. W. & Xie, G., Jan 1 2013, In : Frontiers in Microbiology. 4, MAY

Research output: Contribution to journalArticle

Metagenome
Sequence Analysis
Sulfides
citryl-CoA lyase
rRNA Genes
2012

A versatile refractive-index-matched flow facility for studies of complex flow systems across scientific disciplines

Blois, G., Christensen, K. T., Best, J. L., Elliott, G. S., Austin, J., Dutton, J. C., Bragg, M., Garcia, M. H. & Fouke, B. W., 2012, 50th AIAA Aerospace Sciences Meeting Including the New Horizons Forum and Aerospace Exposition. AIAA 2012-0736

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Refractive index
Fluids
Velocity measurement
Water
Reynolds number
glacial landform
ice flow
glacial sedimentation
basin
ice

Sea-level rise, depth-dependent carbonate sedimentation and the paradox of drowned platforms

Kim, W., Fouke, B. W., Petter, A. L., Quinn, T. M., Kerans, C. & Taylor, F., Oct 1 2012, In : Sedimentology. 59, 6, p. 1677-1694 18 p.

Research output: Contribution to journalArticle

sedimentation
carbonate
carbonate platform
water depth
accumulation rate
2011

Coral black band disease microbial communities and genotypic variability of the dominant cyanobacteria (CD1C11)

Klaus, J. S., Janse, I. & Fouke, B. W., Oct 1 2011, In : Bulletin of Marine Science. 87, 4, p. 795-821 27 p.

Research output: Contribution to journalArticle

microbial communities
corals
Cyanobacteria
cyanobacterium
microbial community
travertine
thermal spring
national park
geochemistry
geomorphology
2010

Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function

Inskeep, W. P., Rusch, D. B., Jay, Z. J., Herrgard, M. J., Kozubal, M. A., Richardson, T. H., Macur, R. E., Hamamura, N., Jennings, R. D. M., Fouke, B. W., Reysenbach, A. L., Roberto, F., Young, M., Schwartz, A., Boyd, E. S., Badger, J. H., Mathur, E. J., Ortmann, A. C., Bateson, M., Geesey, G. & 1 others, Frazier, M., Dec 1 2010, In : PloS one. 5, 3, e9773.

Research output: Contribution to journalArticle

Geothermal springs
Metagenome
Sulfides
microbial communities
community structure

Pore-scale study of transverse mixing induced CaCO3 precipitation and permeability reduction in a model subsurface sedimentary system

Zhang, C., Dehoff, K., Hess, N., Oostrom, M., Wietsma, T. W., Valocchi, A. J., Fouke, B. W. & Werth, C. J., Oct 15 2010, In : Environmental Science and Technology. 44, 20, p. 7833-7838 6 p.

Research output: Contribution to journalArticle

vaterite
Calcium Carbonate
saturation
permeability
carbon sequestration

Secondary minerals associated with geothermal features of yellowstone national park

Inskeep, W., Nordstrom, D. K., Mogk, D. W., Rodman, A. W., Fouke, B. W., Durães, N. & Guzman, M., Dec 1 2010, In : CMS Workshop Lectures. 17, p. 24-51 28 p.

Research output: Contribution to journalArticle

secondary mineral
geothermal system
national park
geochemistry
geomicrobiology

Statistical evaluation of bacterial 16S rRNA gene sequences in relation to travertine mineral precipitation and water chemistry at Mammoth Hot Springs, Yellowstone National Park, USA

Martín, H. G., Veysey, J., Bonheyo, G. T., Goldenfeld, N. & Fouke, B. W., Dec 1 2010, Geomicrobiology: Molecular and Environmental Perspective. Springer Netherlands, p. 239-249 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hot Springs
Mineral Waters
hot springs
hydrochemistry
rRNA Genes

The role of calcining and basal fluidization in the long runout of carbonate slides: An example from the Heart Mountain slide block, Wyoming and Montana, U.S.A

Anders, M. H., Fouke, B. W., Zerkle, A. L., Tavarnelli, E., Alvarez, W. & Harlow, G. E., Nov 1 2010, In : Journal of Geology. 118, 6, p. 577-599 23 p.

Research output: Contribution to journalArticle

fluidization
carbonate
clastic dike
mountain
carbon dioxide
2009
environmental stress
corals
coral
surface temperature
irradiance

Major earthquakes recorded by Speleothems in Midwestern U.S. caves

Panno, S. V., Lundstrom, C. C., Hackley, K. C., Curry, B. B., Fouke, B. W. & Zhang, Z., Aug 1 2009, In : Bulletin of the Seismological Society of America. 99, 4, p. 2147-2154 8 p.

Research output: Contribution to journalArticle

caves
Caves
speleothem
cave
stalagmite
2008

Microbial biomass: A catalyst for CaCO3 precipitation in advection-dominated transport regimes

Kandianis, M. T., Fouke, B. W., Johnson, R. W., Veysey, J. & Inskeep, W. P., Mar 1 2008, In : Bulletin of the Geological Society of America. 120, 3-4, p. 442-450 9 p.

Research output: Contribution to journalArticle

aragonite
advection
catalyst
biomass
kinetics

Reconstruction of water temperature, pH, and flux of ancient Hot Springs from travertine depositional facies

Veysey, J., Fouke, B. W., Kandiannis, M. T., Schickel, T. J., Johnson, R. W. & Goldenfeld, N., Jan 1 2008, In : Journal of Sedimentary Research. 78, 2, p. 69-76 8 p.

Research output: Contribution to journalArticle

travertine
thermal spring
water temperature
spring water
temperature
2007

Coral microbial communities, zooxanthellae and mucus along gradients of seawater depth and coastal pollution

Klaus, J. S., Janse, I., Heikoop, J. M., Sanford, R. A. & Fouke, B. W., May 1 2007, In : Environmental Microbiology. 9, 5, p. 1291-1305 15 p.

Research output: Contribution to journalArticle

Anthozoa
mucus
Seawater
Mucus
microbial communities

Environmental controls on corallite morphology in the reef coral Montastraea annularis

Klaus, J. S., Budd, A. F., Heikoop, J. M. & Fouke, B. W., Jan 1 2007, In : Bulletin of Marine Science. 80, 1, p. 233-260 28 p.

Research output: Contribution to journalArticle

phenotypic plasticity
coral reefs
coral reef
thin section
seawater
2005

Bacterial communities inhabiting the healthy tissues of two Caribbean reef corals: Interspecific and spatial variation

Klaus, J. S., Frias-Lopez, J., Bonheyo, G. T., Heikoop, J. M. & Fouke, B. W., Mar 1 2005, In : Coral Reefs. 24, 1, p. 129-137 9 p.

Research output: Contribution to journalArticle

interspecific variation
bacterial communities
coral reefs
coral reef
spatial variation

Basin-to-platform chemostratigraphy and diagenesis of the Early Cretaceous Vercors Carbonate Platform, SE France

Fouke, B. W., Schlager, W., Vandamme, M. G. M., Henderiks, J. & Van Hilten, B., Apr 15 2005, In : Sedimentary Geology. 175, 1-4 SPEC. ISS., p. 297-314 18 p.

Research output: Contribution to journalArticle

chemostratigraphy
carbonate platform
diagenesis
limestone
shell

Chicxulub impact ejecta deposits in southern Quintana Roo, México, and central Belize

Pope, K. O., Ocampo, A. C., Fischer, A. G., Vega, F. J., Ames, D. E., King, D. T., Fouke, B. W., Wachtman, R. J. & Kletetschka, G., Jan 1 2005, In : Special Paper of the Geological Society of America. 384, p. 171-190 20 p.

Research output: Contribution to journalArticle

diamictite
ejecta
crater
glass
carbonate

Geochemistry of speleothem records from southern Illinois: Development of (234U)/(238U) as a proxy for paleoprecipitation

Zhou, J., Lundstrom, C. C., Fouke, B., Panno, S., Hackley, K. & Curry, B., Sep 5 2005, In : Chemical Geology. 221, 1-2, p. 1-20 20 p.

Research output: Contribution to journalArticle

Geochemistry
speleothem
Uranium
geochemistry
Groundwater
2004

Bacterial community associated with black band disease in corals

Frias-Lopez, J., Klaus, J. S., Bonheyo, G. T. & Fouke, B. W., Oct 1 2004, In : Applied and environmental microbiology. 70, 10, p. 5955-5962 8 p.

Research output: Contribution to journalArticle

Anthozoa
bacterial communities
corals
coral
Cyanobacteria