Brett Bode

19982019
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Research Output 1998 2019

2019

Best practices and lessons from deploying and operating a sustained-petascale system: The blue waters experience

Bauer, G. H., Bode, B., Enos, J. J., Kramer, W. T., Lathrop, S., Mendes, C. L. & Sisneros, R. R., Mar 11 2019, Proceedings - International Conference for High Performance Computing, Networking, Storage, and Analysis, SC 2018. Institute of Electrical and Electronics Engineers Inc., p. 673-684 12 p. 8665815. (Proceedings - International Conference for High Performance Computing, Networking, Storage, and Analysis, SC 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Best Practice
Water
Education
Leadership
Computing

Best practices for management and operation of large HPC installations

Lathrop, S., Mendes, C., Enos, J., Bode, B., Bauer, G., Sisneros, R. & Kramer, W., Aug 25 2019, In : Concurrency Computation. 31, 16, e5069.

Research output: Contribution to journalArticle

Best Practice
Leadership
Supercomputers
Water
Resources
2017

Challenges of workload analysis on large HPC systems; A case study on NCSA Bluewaters

White, J. P., Innus, M., Jones, M. D., DeLeon, R. L., Simakov, N., Palmer, J. T., Gallo, S. M., Furlani, T. R., Showerman, M., Brunner, R. J., Kot, A., Bauer, G. H., Bode, B., Enos, J. J. & Kramer, W. T., Jul 9 2017, PEARC 2017 - Practice and Experience in Advanced Research Computing 2017: Sustainability, Success and Impact. Association for Computing Machinery, a6. (ACM International Conference Proceeding Series; vol. Part F128771).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Water
Supercomputers

Holistic measurement-driven system assessment

Jha, S., Brandt, J., Gentile, A., Kalbarczyk, Z. T., Bauer, G. H., Enos, J. J., Showerman, M., Kaplan, L., Bode, B., Greiner, A., Bonnie, A., Mason, M., Iyer, R. K. & Kramer, W. T., Sep 22 2017, Proceedings - 2017 IEEE International Conference on Cluster Computing, CLUSTER 2017. Institute of Electrical and Electronics Engineers Inc., p. 797-800 4 p. 8049019. (Proceedings - IEEE International Conference on Cluster Computing, ICCC; vol. 2017-September).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Throughput
Hardware
Monitoring
2015

Automatic Parallelization of GPU Applications Using OpenCL

Solano-Quinde, L. D., Bode, B. & Somani, A. K., Oct 1 2015, Proceedings - 2015 Asia-Pacific Conference on Computer-Aided System Engineering, APCASE 2015. Sanchez, A., Monsalve, C. & Chaczko, Z. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 276-283 8 p. 7287032. (Proceedings - 2015 Asia-Pacific Conference on Computer-Aided System Engineering, APCASE 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data transfer
Data storage equipment
Graphics processing unit
Communication
Computer programming languages

Deployment and testing of the sustained petascale Blue Waters system

Mendes, C. L., Bode, B., Bauer, G. H., Enos, J., Beldica, C. & Kramer, W. T., Sep 1 2015, In : Journal of Computational Science. 10, p. 327-337 11 p.

Research output: Contribution to journalArticle

Availability
Water
Testing
Parallel Systems
Preparation

GPU Acceleration of the Horizontal Diffusion Method in the Weather Research and Forecasting (WRF) Model

Gualán Saavedra, R. M., Solano-Quinde, L. D. & Bode, B., Oct 1 2015, Proceedings - 2015 Asia-Pacific Conference on Computer-Aided System Engineering, APCASE 2015. Sanchez, A., Monsalve, C. & Chaczko, Z. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 284-289 6 p. 7287033. (Proceedings - 2015 Asia-Pacific Conference on Computer-Aided System Engineering, APCASE 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Program processors
Graphics processing unit
2014

Deploying a large petascale system: The Blue Waters experience

Mendes, C. L., Bode, B., Bauer, G. H., Enos, J. J., Beldica, C. & Kramer, W. T., Jan 1 2014, In : Procedia Computer Science. 29, p. 198-209 12 p.

Research output: Contribution to journalConference article

Acceptance tests
Supercomputers
Water
Availability
Testing
2012

Techniques for the parallelization of unstructured grid applications on multi-GPU systems

Solano-Quinde, L., Bode, B. & Somani, A. K., Mar 26 2012, Proceedings of the 2012 International Workshop on Programming Models and Applications for Multicores and Manycores, PMAM 2012. p. 140-147 8 p. (Proceedings of the 2012 International Workshop on Programming Models and Applications for Multicores and Manycores, PMAM 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Communication
Data storage equipment
Graphics processing unit
Data transfer
Computer programming languages
2011

Proceedings of the 16th international workshop on high-level parallel programming models and supportive environments

Hoefler, T., Eigenmann, R., Gerndt, M., Müller, F., Rasmussen, C., Schulz, M., Alam, S., Balaji, P., Barrett, R., Bode, B., Bosilca, G., Bronevetsky, G., Danalis, A., De Supinski, B., Ding, C., Fahringer, T., Ishikawa, Y., Knüpfer, A., Mohr, B., Scholz, S. B. & 6 others, Skjellum, T., Snir, M., Tillier, F., Larsson, J., Willcock, J. & Wolf, F., Dec 20 2011, In : IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum. p. 1139-1140 2 p., 6008903.

Research output: Contribution to journalEditorial

Parallel programming
Parallel Programming
Programming Model

Unstructured grid applications on GPU: Performance analysis and improvement

Solano-Quinde, L., Wang, Z. J., Bode, B. & Somani, A. K., Apr 27 2011, Proceedings of the 4th Workshop on General Purpose Processing on Graphics Processing Units, GPGPU-4. (ACM International Conference Proceeding Series).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data storage equipment
Computer hardware
Program processors
Graphics processing unit
2010

Coarse grain computation-communication overlap for efficient application-level checkpointing for GPUs

Solano-Quinde, L. D., Bode, B. & Somani, A. K., Nov 29 2010, 2010 IEEE International Conference on Electro/Information Technology, EIT2010. 5612125. (2010 IEEE International Conference on Electro/Information Technology, EIT2010).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Communication
Fault tolerance
Graphics processing unit

Uncontracted rys quadrature implementation of up to G functions on graphical processing units

Asadchev, A., Allada, V., Felder, J., Bode, B. M., Gordon, M. S. & Windus, T. L., Mar 9 2010, In : Journal of Chemical Theory and Computation. 6, 3, p. 696-704 9 p.

Research output: Contribution to journalArticle

quadratures
Processing
Linear algebra
Parallel architectures
Subroutines
2009

Performance analysis of memory transfers and GEMM subroutines on NVIDIA Tesla GPU cluster

Allada, V., Benjegerdes, T. & Bode, B., Dec 21 2009, 2009 IEEE International Conference on Cluster Computing and Workshops, CLUSTER '09. 5289124. (Proceedings - IEEE International Conference on Cluster Computing, ICCC).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Subroutines
Data storage equipment
Processing
Linear algebra
Computational chemistry

Performance of electronic structure calculations on BG/L and XT4 computers

Asadchev, A., Bode, B. M. & Gordon, M. S., Jun 1 2009, In : Journal of Computational and Theoretical Nanoscience. 6, 6, p. 1290-1296 7 p.

Research output: Contribution to journalArticle

Electronic Structure
genes
Electronic structure
Genes
electronic structure
2008

Module prototype for online failure prediction for the IBM blue Gene/L

Solano-Quinde, L. D. & Bode, B. M., Sep 15 2008, 2008 IEEE International Conference on Electro/Information Technology, IEEE EIT 2008 Conference. p. 470-474 5 p. 4554349. (2008 IEEE International Conference on Electro/Information Technology, IEEE EIT 2008 Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes
performance
Hardware
event
Degradation

RAS and Job log data analysis for failure prediction for the IBM Blue Gene/L

Solano-Quinde, L. D. & Bode, B., Dec 1 2008, Proceedings of the 20th IASTED International Conference on Parallel and Distributed Computing and Systems, PDCS 2008. p. 270-278 9 p. (Proceedings of the IASTED International Conference on Parallel and Distributed Computing and Systems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes
2006

The node monitoring component of a scalable systems software environment

Miller, S. & Bode, B., Dec 1 2006, Proceedings - 12th International Conference on Parallel and Distributed Systems, ICPADS 2006. p. 579-588 10 p. 1655706. (Proceedings of the International Conference on Parallel and Distributed Systems - ICPADS; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fountains
Monitoring
Hierarchical systems
HTTP
XML

Trading memory for disk: Using parallel access to fast InfiniBand disk arrays for large computational chemistry applications

Benjegerdes, T., Bode, B. & Schochenmaier, K., Dec 1 2006, Proceedings of the 2006 ACM/IEEE Conference on Supercomputing, SC'06. 1188796. (Proceedings of the 2006 ACM/IEEE Conference on Supercomputing, SC'06).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computational chemistry
Data storage equipment
Cache memory
Network performance
Servers
2005

A performance comparison of tree and ring topologies in distributed systems

Huang, M. & Bode, B., Dec 1 2005, Proceedings - 19th IEEE International Parallel and Distributed Processing Symposium, IPDPS 2005. 1420201. (Proceedings - 19th IEEE International Parallel and Distributed Processing Symposium, IPDPS 2005; vol. 2005).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Topology
Telecommunication networks
Scalability
Costs
Availability

Performance effects of node mappings on the IBM BlueGene/L machine

Smith, B. E. & Bode, B., Oct 31 2005, In : Lecture Notes in Computer Science. 3648, p. 1005-1013 9 p.

Research output: Contribution to journalConference article

Vertex of a graph
Torus
Random Mapping
Gray Code
Supercomputers

Scalable system software: A component-based approach

Bode, B., Bradshaw, R., Debenedictus, E., Desai, N., Duell, J., Geist, A., Hargrove, P., Jackson, D., Jackson, S., Laros, J., Lowe, C., Lusk, E., McLendon, W., Mugler, J., Naughton, T., Navarro, J. P., Oldfield, R., Pundit, N., Scott, S. L., Showerman, M. & 2 others, Steffen, C. P. & Walker, K., Jan 1 2005, In : Journal of Physics: Conference Series. 16, 1, p. 546-550 5 p.

Research output: Contribution to journalArticle

computer programs
interoperability
maintenance
central processing units
resources
2004

GAMESS and MACMOLPLT

Schmidt, M. W., Bode, B. M. & Gordon, M. S., Jun 1 2004, Comprehensive Coordination Chemistry II. Elsevier Ltd, Vol. 2. p. 665-667 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2000

Distributed data interface in GAMESS

Fletcher, G. D., Schmidt, M. W., Bode, B. M. & Gordon, M. S., Jun 9 2000, In : Computer Physics Communications. 128, 1, p. 190-200 11 p.

Research output: Contribution to journalArticle

messages
Data storage equipment
Computer workstations
Message passing
distributed memory
1999

Catalysis of the hydrosilation and bis-silylation reactions

Bode, B., Raaii, F. & Gordon, M. S., Dec 1 1999, In : ACS Symposium Series. 721, p. 128-137 10 p.

Research output: Contribution to journalArticle

Titanium
Catalysis
Electronic structure

Fast computation of analytical second derivatives with effective core potentials: Application to Si8C12, Ge8C12, and Sn8C12

Bode, B. & Gordon, M. S., Nov 15 1999, In : Journal of Chemical Physics. 111, 19, p. 8778-8784 7 p.

Research output: Contribution to journalArticle

Angular momentum
Vibrational spectra
Scalability
Derivatives
Geometry

The catalyzed hydrosilation reaction: Substituent effects

Bode, B. & Gordon, M. S., Jun 1999, In : Theoretical Chemistry Accounts. 102, 1-6, p. 366-376 11 p.

Research output: Contribution to journalArticle

Wave functions
Titanium
Electronic structure
titanium
electronic structure
1998

MacMolPlt: A graphical user interface for GAMESS

Bode, B. M. & Gordon, M. S., Dec 1 1998, In : Journal of Molecular Graphics and Modelling. 16, 3, p. 133-138 6 p.

Research output: Contribution to journalArticle

graphical user interface
Graphical user interfaces
Molecular structure
Carrier concentration
Electrostatics

The catalyzed hydrosilation reaction

Bode, B. M., Day, P. N. & Gordon, M. S., Feb 25 1998, In : Journal of the American Chemical Society. 120, 7, p. 1552-1555 4 p.

Research output: Contribution to journalArticle

Chinese Continental Scientific Drilling Project
Wave functions
Titanium
titanium
Electronic structure