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Research Output 2003 2020

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Article
2020

Rapid and distinct responses of particulate and mineral-associated organic nitrogen to conservation tillage and cover crops

Jilling, A., Kane, D., Williams, A., Yannarell, A. C., Davis, A., Jordan, N. R., Koide, R. T., Mortensen, D. A., Smith, R. G., Snapp, S. S., Spokas, K. A. & Stuart Grandy, A., Feb 1 2020, In : Geoderma. 359, 114001.

Research output: Contribution to journalArticle

conservation tillage
cover crop
organic nitrogen
particulate organic matter
cover crops
2019

Interspecific variation in crop and weed responses to arbuscular mycorrhizal fungal community highlights opportunities for weed biocontrol

Li, M., Jordan, N. R., Koide, R. T., Yannarell, A. C. & Davis, A. S., Oct 2019, In : Applied Soil Ecology. 142, p. 34-42 9 p.

Research output: Contribution to journalArticle

interspecific variation
fungal communities
Zea mays
weed
biological control

Nitrogen provisioned and recycled by cover crops in monoculture and mixture across two organic farms

Holmes, A. A., Thompson, A. A., Lovell, S. T., Villamil, M. B., Yannarell, A. C., Dawson, J. O. & Wortman, S. E., Dec 1 2019, In : Nutrient Cycling in Agroecosystems. 115, 3, p. 441-453 13 p.

Research output: Contribution to journalArticle

cover crop
monoculture
cover crops
farm
farms
2017

Reconciling opposing soil processes in row-crop agroecosystems via soil functional zone management

Williams, A., Davis, A. S., Jilling, A., Grandy, A. S., Koide, R. T., Mortensen, D. A., Smith, R. G., Snapp, S. S., Spokas, K. A., Yannarell, A. C. & Jordan, N. R., Jan 2 2017, In : Agriculture, Ecosystems and Environment. 236, p. 99-107 9 p.

Research output: Contribution to journalArticle

agricultural ecosystem
agroecosystems
ridge tillage
crop
crops
2016

A comparison of soil hydrothermal properties in zonal and uniform tillage systems across the US Corn Belt

Williams, A., Davis, A. S., Ewing, P. M., Grandy, A. S., Kane, D. A., Koide, R. T., Mortensen, D. A., Smith, R. G., Snapp, S. S., Spokas, K. A., Yannarell, A. C. & Jordan, N. R., Jul 1 2016, In : Geoderma. 273, p. 12-19 8 p.

Research output: Contribution to journalArticle

Corn Belt region
ridge tillage
tillage
maize
plows
allelochemical
cover crop
allelochemicals
crop residue
cover crops

Meta-analysis of crop and weed growth responses to Arbuscular Mycorrhizal Fungi: Implications for integrated weed management

Li, M., Jordan, N. R., Koide, R. T., Yannarell, A. C. & Davis, A. S., Oct 1 2016, In : Weed Science. 64, 4, p. 642-652 11 p.

Research output: Contribution to journalArticle

integrated weed management
weed hosts
meta-analysis
mycorrhizal fungi
weeds

Microbes as engines of ecosystem function: When does community structure enhance predictions of ecosystem processes?

Graham, E. B., Knelman, J. E., Schindlbacher, A., Siciliano, S., Breulmann, M., Yannarell, A., Beman, J. M., Abell, G., Philippot, L., Prosser, J., Foulquier, A., Yuste, J. C., Glanville, H. C., Jones, D. L., Angel, R., Salminen, J., Newton, R. J., Bürgmann, H., Ingram, L. J., Hamer, U. & 30 others, Siljanen, H. M. P., Peltoniemi, K., Potthast, K., Bañeras, L., Hartmann, M., Banerjee, S., Yu, R. Q., Nogaro, G., Richter, A., Koranda, M., Castle, S. C., Goberna, M., Song, B., Chatterjee, A., Nunes, O. C., Lopes, A. R., Cao, Y., Kaisermann, A., Hallin, S., Strickland, M. S., Garcia-Pausas, J., Barba, J., Kang, H., Isobe, K., Papaspyrou, S., Pastorelli, R., Lagomarsino, A., Lindström, E. S., Basiliko, N. & Nemergut, D. R., Feb 24 2016, In : Frontiers in Microbiology. 7, FEB, 214.

Research output: Contribution to journalArticle

Ecosystem
Biomass
Biota
Respiratory Rate
Ecology

Native Lespedeza species harbor greater non-rhizobial bacterial diversity in root nodules compared to the coexisting invader, L. cuneata

Busby, R. R., Rodriguez, G., Gebhart, D. L. & Yannarell, A., Apr 1 2016, In : Plant and Soil. 401, 1-2, p. 427-436 10 p.

Research output: Contribution to journalArticle

Lespedeza cuneata
Lespedeza
root nodules
native species
harbor

Precision control of soil nitrogen cycling via soil functional zone management

Williams, A., Davis, A. S., Ewing, P. M., Grandy, A. S., Kane, D. A., Koide, R. T., Mortensen, D. A., Smith, R. G., Snapp, S. S., Spokas, K. A., Yannarell, A. C. & Jordan, N. R., Sep 1 2016, In : Agriculture, Ecosystems and Environment. 231, p. 291-295 5 p.

Research output: Contribution to journalArticle

soil nitrogen
crop
nitrogen
crops
soil

Soil functional zone management: A vehicle for enhancing production and soil ecosystem services in row-crop agroecosystems

Williams, A., Kane, D. A., Ewing, P. M., Atwood, L. W., Jilling, A., Li, M., Lou, Y., Davis, A. S., Grandy, A. S., Huerd, S. C., Hunter, M. C., Koide, R. T., Mortensen, D. A., Smith, R. G., Snapp, S. S., Spokas, K. A., Yannarell, A. C. & Jordan, N. R., Feb 5 2016, In : Frontiers in Plant Science. 7, FEB2016, 65.

Research output: Contribution to journalArticle

agroecosystems
ecosystem services
crops
soil
soil ecosystems
2015

The role of ammonium oxidizing communities in mediating effects of an invasive plant on soil nitrification

Shannon-Firestone, S., Reynolds, H. L., Phillips, R. P., Flory, S. L. & Yannarell, A., Nov 1 2015, In : Soil Biology and Biochemistry. 90, p. 266-274 9 p.

Research output: Contribution to journalArticle

Microstegium vimineum
Nitrification
Ammonium Compounds
nitrification
Soil
2014

An Affinity-Effect Relationship for Microbial Communities in Plant-Soil Feedback Loops

Lou, Y., Clay, S. A., Davis, A. S., Dille, A., Felix, J., Ramirez, A. H. M., Sprague, C. L. & Yannarell, A. C., May 2014, In : Microbial Ecology. 67, 4, p. 866-876 11 p.

Research output: Contribution to journalArticle

Helianthus annuus
microbial communities
microbial community
soil
Ambrosia trifida

Dynamics of the bacterial community structure in the rhizosphere of a maize cultivar

Li, X., Rui, J., Mao, Y., Yannarell, A. & Mackie, R. I., Jan 1 2014, In : Soil Biology and Biochemistry. 68, p. 392-401 10 p.

Research output: Contribution to journalArticle

Bacterial Structures
Rhizosphere
bacterial communities
Zea mays
rhizosphere
Panicum
Rhizosphere
Panicum virgatum
root exudates
Exudates and Transudates

Functional potential of soil microbial communities in the maize rhizosphere

Li, X., Rui, J., Xiong, J., Li, J., He, Z., Zhou, J., Yannarell, A. C. & Mackie, R. I., Nov 10 2014, In : PloS one. 9, 11, e112609.

Research output: Contribution to journalArticle

Rhizosphere
Zea mays
microbial communities
rhizosphere
Soil

Halomonas sulfidaeris-dominated microbial community inhabits a 1.8 km-deep subsurface Cambrian sandstone reservoir

Dong, Y., Kumar, C. G., Chia, N., Kim, P. J., Miller, P. A., Price, N. D., Cann, I. K. O., Flynn, T. M., Sanford, R. A., Krapac, I. G., Locke, R. A., Hong, P. Y., Tamaki, H., Liu, W. T., Mackie, R. I., Hernandez, A. G., Wright, C. L., Mikel, M. A., Walker, J. L., Sivaguru, M. & 3 others, Fried, G., Yannarell, A. C. & Fouke, B. W., 2014, In : Environmental Microbiology. 16, 6, p. 1695-1708 14 p.

Research output: Contribution to journalArticle

Halomonas
sandstone
Hydrocarbons
Metabolic Networks and Pathways
microbial communities

Influence of Shrub Encroachment on the Soil Microbial Community Composition of Remnant Hill Prairies

Yannarell, A. C., Menning, S. E. & Beck, A. M., May 2014, In : Microbial Ecology. 67, 4, p. 897-906 10 p.

Research output: Contribution to journalArticle

prairies
prairie
community composition
microbial communities
microbial community

Invasive Lespedeza cuneata and native Lespedeza virginica experience asymmetrical benefits from rhizobial symbionts

Hu, L., Busby, R. R., Gebhart, D. L. & Yannarell, A. C., Oct 25 2014, In : Plant and Soil. 384, 1-2, p. 315-325 11 p.

Research output: Contribution to journalArticle

Lespedeza cuneata
Lespedeza
symbiont
symbionts
biomass

Structural equation modeling facilitates transdisciplinary research on agriculture and climate change

Smith, R. G., Davis, A. S., Jordan, N. R., Atwood, L. W., Daly, A. B., Stuart Grandy, A., Hunter, M. C., Koide, R. T., Mortensen, D. A., Ewing, P., Kane, D., Li, M., Lou, Y., Snapp, S. S., Spokas, K. A. & Yannarell, A. C., Mar 1 2014, In : Crop Science. 54, 2, p. 475-483 9 p.

Research output: Contribution to journalArticle

climate change
agriculture
agroecosystems
funding
planning
2013

Impact of different bioenergy crops on N-cycling bacterial and archaeal communities in soil

Mao, Y., Yannarell, A. C., Davis, S. C. & Mackie, R. I., Mar 1 2013, In : Environmental Microbiology. 15, 3, p. 928-942 15 p.

Research output: Contribution to journalArticle

energy crops
bioenergy
Zea mays
Poaceae
Soil

Monitoring the perturbation of soil and groundwater microbial communities due to pig production activities

Hong, P. Y., Yannarell, A. C., Dai, Q., Ekizoglu, M. & Mackie, R. I., Apr 1 2013, In : Applied and environmental microbiology. 79, 8, p. 2620-2629 10 p.

Research output: Contribution to journalArticle

Groundwater
pig
microbial communities
microbial community
groundwater
2011

Changes in N-Transforming archaea and bacteria in soil during the establishment of bioenergy crops

Mao, Y., Yannarell, A. C. & Mackie, R. I., Sep 14 2011, In : PloS one. 6, 9, e24750.

Research output: Contribution to journalArticle

Archaea
energy crops
soil bacteria
Zea mays
Crops

Characterization of bacterial diversity at different depths in the Moravia Hill landfill site at Medellín, Colombia

Gomez, A. M., Yannarell, A., Sims, G. K., Cadavid-Restrepo, G. & Moreno Herrera, C. X., Jun 1 2011, In : Soil Biology and Biochemistry. 43, 6, p. 1275-1284 10 p.

Research output: Contribution to journalArticle

Waste Disposal Facilities
Colombia
landfills
Solid Waste
Proteobacteria

Fecal microbiota of calves in the clinical setting: Effect of penicillin treatment

Grønvold, A. M. R., Mao, Y., L'Abée-Lund, T. M., Sørum, H., Sivertsen, T., Yannarell, A. C. & Mackie, R. I., Dec 15 2011, In : Veterinary Microbiology. 153, 3-4, p. 354-360 7 p.

Research output: Contribution to journalArticle

Microbiota
penicillins
Penicillins
calves
Escherichia coli

Soil bacteria and fungi respond on different spatial scales to invasion by the legume Lespedeza cuneata

Yannarell, A. C., Busby, R. R., Denight, M. L., Gebhart, D. L. & Taylor, S. J., Jan 1 2011, In : Frontiers in Microbiology. 2, JUNE

Research output: Contribution to journalArticle

Lespedeza
Fabaceae
Fungi
Soil
Bacteria

V-REVCOMP: Automated high-throughput detection of reverse complementary 16S rRNA gene sequences in large environmental and taxonomic datasets

Hartmann, M., Howes, C. G., Veldre, V., Schneider, S., Vaishampayan, P. A., Yannarell, A. C., Quince, C., Johansson, P., Björkroth, K. J., Abarenkov, K., Hallam, S. J., Mohn, W. W. & Nilsson, R. H., Jun 1 2011, In : FEMS microbiology letters. 319, 2, p. 140-145 6 p.

Research output: Contribution to journalArticle

rRNA Genes
Databases
Software
Pyrimidines
Purines
2010

Changes in fecal microbiota of healthy dogs administered amoxicillin

Grønvold, A. M. R., L'Abée-Lund, T. M., Sørum, H., Skancke, E., Yannarell, A. C. & MacKie, R. I., Feb 1 2010, In : FEMS microbiology ecology. 71, 2, p. 313-326 14 p.

Research output: Contribution to journalArticle

Microbiota
Amoxicillin
Dogs
Bacterial Drug Resistance
Population

Fecal microbiota of horses in the clinical setting: Potential effects of penicillin and general anesthesia

Grønvold, A. M. R., L'Abée-Lund, T. M., Strand, E., Sørum, H., Yannarell, A. C. & Mackie, R. I., Oct 26 2010, In : Veterinary Microbiology. 145, 3-4, p. 366-372 7 p.

Research output: Contribution to journalArticle

Microbiota
penicillins
Penicillins
General Anesthesia
Horses

Molecular ecology of macrolide-lincosamide-streptogramin B methylases in waste lagoons and subsurface waters associated with swine production

Koike, S., Aminov, R. I., Yannarell, A., Gans, H. D., Krapac, I. G., Chee-Sanford, J. C. & Mackie, R. I., Jan 1 2010, In : Microbial Ecology. 59, 3, p. 487-498 12 p.

Research output: Contribution to journalArticle

waste lagoons
molecular ecology
macrolides
lagoon
ecology
2009

Evaluation of swine-specific PCR assays used for fecal source tracking and analysis of molecular diversity of swine-specific "Bacteroidales" populations

Lamendella, R., Santo Domingo, J. W., Yannarell, A. C., Ghosh, S., Di Giovanni, G., Mackie, R. I. & Oerther, D. B., Sep 1 2009, In : Applied and environmental microbiology. 75, 18, p. 5787-5796 10 p.

Research output: Contribution to journalArticle

Swine
assay
Polymerase Chain Reaction
swine
assays

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

Brulc, J. M., Antonopoulos, D. A., Berg Miller, M. E., Wilson, M. K., Yannarell, A., Dinsdale, E. A., Edwards, R. E., Frank, E. D., Emerson, J. B., Wacklin, P., Coutinho, P. M., Henrissat, B., Nelson, K. E. & White, B. A., Feb 10 2009, In : Proceedings of the National Academy of Sciences of the United States of America. 106, 6, p. 1948-1953 6 p.

Research output: Contribution to journalArticle

Metagenomics
Glycoside Hydrolases
Microbiota
Rumen
Genes
2007

Disturbance and recovery of microbial community structure and function following Hurricane Frances

Yannarell, A. C., Steppe, T. F. & Paerl, H. W., Mar 1 2007, In : Environmental Microbiology. 9, 3, p. 576-583 8 p.

Research output: Contribution to journalArticle

Cyclonic Storms
hurricanes
hurricane
France
microbial communities

Effects of salinity and light on organic carbon and nitrogen uptake in a hypersaline microbial mat

Yannarell, A. C. & Paerl, H. W., Dec 1 2007, In : FEMS microbiology ecology. 62, 3, p. 345-353 9 p.

Research output: Contribution to journalArticle

microbial mat
Salinity
organic nitrogen
dissolved organic matter
Nitrogen

Linking terrestrial and aquatic ecosystems: The role of woody habitat in lake food webs

Roth, B. M., Kaplan, I. C., Sass, G. G., Johnson, P. T., Marburg, A. E., Yannarell, A. C., Havlicek, T. D., Willis, T. V., Turner, M. G. & Carpenter, S. R., May 10 2007, In : Ecological Modelling. 203, 3-4, p. 439-452 14 p.

Research output: Contribution to journalArticle

terrestrial ecosystem
aquatic ecosystem
piscivore
food web
lake

Monitoring and source tracking of tetracycline resistance genes in lagoons and groundwater adjacent to swine production facilities over a 3-year period

Koike, S., Krapac, I. G., Oliver, H. D., Yannarell, A. C., Chee-Sanford, J. C., Aminov, R. I. & Mackie, R. I., Aug 1 2007, In : Applied and environmental microbiology. 73, 15, p. 4813-4823 11 p.

Research output: Contribution to journalArticle

Tetracycline Resistance
Groundwater
tetracycline
lagoon
groundwater

Synchrony in aquatic microbial community dynamics

Kent, A. D., Yannarell, A. C., Rusak, J. A., Triplett, E. W. & McMahon, K. D., May 1 2007, In : ISME Journal. 1, 1, p. 38-47 10 p.

Research output: Contribution to journalArticle

Phytoplankton
synchrony
community dynamics
microbial communities
microbial community
2006

Genetic variance in the composition of two functional groups (diazotrophs and cyanobacteria) from a hypersaline microbial mat

Yannarell, A. C., Steppe, T. F. & Paerl, H. W., Feb 1 2006, In : Applied and environmental microbiology. 72, 2, p. 1207-1217 11 p.

Research output: Contribution to journalArticle

nitrogen-fixing bacteria
microbial mat
Cyanobacteria
genetic variance
functional group
2005

Geographic and environmental sources of variation in lake bacterial community composition

Yannarell, A. C. & Triplett, E. W., Jan 1 2005, In : Applied and environmental microbiology. 71, 1, p. 227-239 13 p.

Research output: Contribution to journalArticle

Lakes
bacterial communities
community composition
lakes
lake
2004

Annual patterns in bacterioplankton community variability in a Humic Lake

Kent, A. D., Jones, S. E., Yannarell, A., Graham, J. M., Lauster, G. H., Kratz, T. K. & Triplett, E. W., 2004, In : Microbial Ecology. 48, 4, p. 550-560 11 p.

Research output: Contribution to journalArticle

humic lake
Dinoflagellida
bacterioplankton
Lakes
Food-Drug Interactions

Seasonal dynamics of phytoplankton and planktonic protozoan communities in a northern temperate humic lake: Diversity in a dinoflagellate dominated system

Graham, J. M., Kent, A. D., Lauster, G. H., Yannarell, A., Graham, L. E. & Triplett, E. W., Dec 1 2004, In : Microbial Ecology. 48, 4, p. 528-540 13 p.

Research output: Contribution to journalArticle

humic lake
dinoflagellate
Protozoa
phytoplankton
bog
bacterioplankton
Lakes
lakes
lake
bacterial communities
2003

Temporal Patterns in Bacterial Communities in Three Temperate Lakes of Different Trophic Status

Yannarell, A. C., Kent, A. D., Lauster, G. H., Kratz, T. K. & Triplett, E. W., Dec 1 2003, In : Microbial Ecology. 46, 4, p. 391-405 15 p.

Research output: Contribution to journalArticle

trophic status
bacterial communities
lakes
lake
intergenic DNA