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Research Output 1999 2019

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Article
2019

Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks

Farré, M., Kim, J., Proskuryakova, A. A., Zhang, Y., Kulemzina, A. I., Li, Q., Zhou, Y., Xiong, Y., Johnson, J. L., Perelman, P. L., Johnson, W. E., Warren, W. C., Kukekova, A. V., Zhang, G., O’Brien, S. J., Ryder, O. A., Graphodatsky, A. S., Ma, J., Lewin, H. A. & Larkin, D. M., Apr 2019, In : Genome Research. 29, 4, p. 576-589 14 p.

Research output: Contribution to journalArticle

Open Access
Synteny
Ruminants
Genes
DNA Transposable Elements
Chromosomes

The Red Fox Y-Chromosome in Comparative Context

Rando, H. M., Wadlington, W. H., Johnson, J. L., Stutchman, J. T., Trut, L. N., Farré, M. & Kukekova, A. V., May 28 2019, In : Genes. 10, 6, 409.

Research output: Contribution to journalArticle

Open Access
Y Chromosome
Genome
Cats
Dogs
Genes
2018

Anterior pituitary transcriptome suggests differences in ACTH release in tame and aggressive foxes

Hekman, J. P., Johnson, J. L., Edwards, W., Vladimirova, A. V., Gulevich, R. G., Ford, A. L., Kharlamova, A. V., Herbeck, Y., Acland, G. M., Raetzman, L. T., Trut, L. N. & Kukekova, A. V., Mar 1 2018, In : G3: Genes, Genomes, Genetics. 8, 3, p. 859-873 15 p.

Research output: Contribution to journalArticle

Transcriptome
Adrenocorticotropic Hormone
Pseudopodia
Exocytosis
Aggression

Construction of red fox chromosomal fragments from the short-read genome assembly

Rando, H. M., Farré, M., Robson, M. P., Won, N. B., Johnson, J. L., Buch, R., Bastounes, E. R., Xiang, X., Feng, S., Liu, S., Xiong, Z., Kim, J., Zhang, G., Trut, L. N., Larkin, D. M. & Kukekova, A. V., Jun 20 2018, In : Genes. 9, 6, 308.

Research output: Contribution to journalArticle

Genome
Chromosomes
Dogs
Genetic Research
Genomics

Development of a genotype-by-sequencing immunogenetic assay as exemplified by screening for variation in red fox with and without endemic rabies exposure

Donaldson, M. E., Rico, Y., Hueffer, K., Rando, H. M., Kukekova, A. V. & Kyle, C. J., Jan 2018, In : Ecology and Evolution. 8, 1, p. 572-583 12 p.

Research output: Contribution to journalArticle

immunogenetics
rabies
Vulpes vulpes
genotype
assay

Genomic responses to selection for tame/aggressive behaviors in the silver fox (Vulpes vulpes)

Wang, X., Pipes, L., Trut, L. N., Herbeck, Y., Vladimirova, A. V., Gulevich, R. G., Kharlamova, A. V., Johnson, J. L., Acland, G. M., Kukekova, A. V. & Clark, A. G., Oct 9 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 41, p. 10398-10403 6 p.

Research output: Contribution to journalArticle

Silver
Gene Frequency
Genes
Single Nucleotide Polymorphism
Neural Crest

Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours

Kukekova, A. V., Johnson, J. L., Xiang, X., Feng, S., Liu, S., Rando, H. M., Kharlamova, A. V., Herbeck, Y., Serdyukova, N. A., Xiong, Z., Beklemischeva, V., Koepfli, K. P., Gulevich, R. G., Vladimirova, A. V., Hekman, J. P., Perelman, P. L., Graphodatsky, A. S., O’Brien, S. J., Wang, X., Clark, A. G. & 3 others, Acland, G. M., Trut, L. N. & Zhang, G., Sep 1 2018, In : Nature Ecology and Evolution. 2, 9, p. 1479-1491 13 p.

Research output: Contribution to journalArticle

genome assembly
Vulpes vulpes
foxes
aggression
genomics

Sequencing of supernumerary chromosomes of red fox and raccoon dog confirms a non-random gene acquisition by B chromosomes

Makunin, A. I., Romanenko, S. A., Beklemisheva, V. R., Perelman, P. L., Druzhkova, A. S., Petrova, K. O., Prokopov, D. Y., Chernyaeva, E. N., Johnson, J. L., Kukekova, A. V., Yang, F., Ferguson-Smith, M. A., Graphodatsky, A. S. & Trifonov, V. A., Aug 10 2018, In : Genes. 9, 8, 405.

Research output: Contribution to journalArticle

Raccoon Dogs
Chromosomes, Human, 4-5
Chromosomes
Genes
Ruminants
2017

Genetics of Interactive Behavior in Silver Foxes (Vulpes vulpes)

Nelson, R. M., Temnykh, S. V., Johnson, J. L., Kharlamova, A. V., Vladimirova, A. V., Gulevich, R. G., Shepeleva, D. V., Oskina, I. N., Acland, G. M., Rönnegård, L., Trut, L. N., Carlborg, Ö. & Kukekova, A. V., Jan 1 2017, In : Behavior genetics. 47, 1, p. 88-101 14 p.

Research output: Contribution to journalArticle

Vulpes vulpes
Silver
silver
phenotype
foxes

X chromosome evolution in cetartiodactyla

Proskuryakova, A. A., Kulemzina, A. I., Perelman, P. L., Makunin, A. I., Larkin, D. M., Farré, M., Kukekova, A. V., Lynn Johnson, J., Lemskaya, N. A., Beklemisheva, V. R., Roelke-Parker, M. E., Bellizzi, J., Ryder, O. A., O’Brien, S. J. & Graphodatsky, A. S., Sep 2017, In : Genes. 8, 9, 2016.

Research output: Contribution to journalArticle

X Chromosome
Deer
Centromere
Bacterial Artificial Chromosomes
Cetacea

Y-Chromosome markers for the red fox

Rando, H. M., Stutchman, J. T., Bastounes, E. R., Johnson, J. L., Driscoll, C. A., Barr, C. S., Trut, L. N., Sacks, B. N. & Kukekova, A. V., Jan 1 2017, In : Journal of Heredity. 108, 6, p. 678-685 8 p.

Research output: Contribution to journalArticle

Y Chromosome
Genetic Markers
Haplotypes
Population
Genome
2016

Georgian white coat color of red fox (Vulpes vulpes) maps to fox chromosome 2 in the region containing KIT gene

Kukekova, A. V., Johnson, J. L., Kharlamova, A. V., Vladimirova, A. V., Shepeleva, D. V., Gulevich, R. G. & Trut, L. N., Aug 1 2016, In : Animal genetics. 47, 4, p. 514-515 2 p.

Research output: Contribution to journalArticle

Proto-Oncogene Proteins c-kit
Chromosomes, Human, Pair 2
Chromosome Mapping
Vulpes vulpes
Pigmentation
2015

Genotyping-by-sequencing (GBS) detects genetic structure and confirms behavioral QTL in tame and aggressive foxes (Vulpes vulpes)

Johnson, J. L., Wittgenstein, H., Mitchell, S. E., Hyma, K. E., Temnykh, S. V., Kharlamova, A. V., Gulevich, R. G., Vladimirova, A. V., Fong, H. W. F., Acland, G. M., Trut, L. N. & Kukekova, A. V., Jun 10 2015, In : PloS one. 10, 6, e0127013.

Research output: Contribution to journalArticle

Genetic Structures
Vulpes vulpes
foxes
genotyping
quantitative trait loci

Platinum coat color in red fox (Vulpes vulpes) is caused by a mutation in an autosomal copy of KIT

Johnson, J. L., Kozysa, A., Kharlamova, A. V., Gulevich, R. G., Perelman, P. L., Fong, H. W. F., Vladimirova, A. V., Oskina, I. N., Trut, L. N. & Kukekova, A. V., Apr 1 2015, In : Animal genetics. 46, 2, p. 190-199 10 p.

Research output: Contribution to journalArticle

platinum
Vulpes vulpes
Platinum
Color
foxes
2013

Fox domestication: Molecular mechanisms involved in selection for behavior

Trut, L. N., Herbeck, Y. E., Kharlamova, A. V., Gulevich, R. G. & Kukekova, A. V., Dec 31 2013, In : Russian Journal of Genetics: Applied Research. 3, 6, p. 419-425 7 p.

Research output: Contribution to journalArticle

foxes
domestication
Vulpes vulpes
chromosomes
phenotype

Genomic deletion of CNGB3 is identical by descent in multiple canine breeds and causes achromatopsia

Yeh, C. Y., Goldstein, O., Kukekova, A. V., Holley, D., Knollinger, A. M., Huson, H. J., Pearce-Kelling, S. E., Acland, G. M. & Komáromy, A. M., Apr 20 2013, In : BMC genetics. 14, 27.

Research output: Contribution to journalArticle

Color Vision Defects
Canidae
Alleles
Dogs
Cyclic Nucleotide-Gated Cation Channels
2012

Genetics of behavior in the silver fox

Kukekova, A. V., Temnykh, S. V., Johnson, J. L., Trut, L. N. & Acland, G. M., Feb 1 2012, In : Mammalian Genome. 23, 1-2, p. 164-177 14 p.

Research output: Contribution to journalArticle

Silver
Molecular Evolution
Molecular Biology
History
Phenotype
2011

Mapping loci for fox domestication: Deconstruction/Reconstruction of a behavioral phenotype

Kukekova, A. V., Trut, L. N., Chase, K., Kharlamova, A. V., Johnson, J. L., Temnykh, S. V., Oskina, I. N., Gulevich, R. G., Vladimirova, A. V., Klebanov, S., Shepeleva, D. V., Shikhevich, S. G., Acland, G. M. & Lark, K. G., Jul 1 2011, In : Behavior genetics. 41, 4, p. 593-606 14 p.

Research output: Contribution to journalArticle

domestication
foxes
phenotype
Phenotype
loci

On the origin of a domesticated species: Identifying the parent population of Russian silver foxes (Vulpes vulpes)

Statham, M. J., Trut, L. N., Sacks, B. N., Kharlamova, A. V., Oskina, I. N., Gulevich, R. G., Johnson, J. L., Temnykh, S. V., Acland, G. M. & Kukekova, A. V., May 1 2011, In : Biological Journal of the Linnean Society. 103, 1, p. 168-175 8 p.

Research output: Contribution to journalArticle

Vulpes vulpes
foxes
silver
farm
historical record

Sequence comparison of prefrontal cortical brain transcriptome from a tame and an aggressive silver fox (Vulpes vulpes)

Kukekova, A. V., Johnson, J. L., Teiling, C., Li, L., Oskina, I. N., Kharlamova, A. V., Gulevich, R. G., Padte, R., Dubreuil, M. M., Vladimirova, A. V., Shepeleva, D. V., Shikhevich, S. G., Sun, Q., Ponnala, L., Temnykh, S. V., Trut, L. N. & Acland, G. M., Oct 3 2011, In : BMC genomics. 12, 482.

Research output: Contribution to journalArticle

Transcriptome
Silver
Brain
Frontal Lobe
Genes
2010

COL9A2 and COL9A3 mutations in canine autosomal recessive oculoskeletal dysplasia

Goldstein, O., Guyon, R., Kukekova, A. V., Kuznetsova, T. N., Pearce-Kelling, S. E., Johnson, J., Aguirre, G. D. & Acland, G. M., Aug 1 2010, In : Mammalian Genome. 21, 7-8, p. 398-408 11 p.

Research output: Contribution to journalArticle

Canidae
Mutation
Retina
Newfoundland and Labrador
Chromosomes, Human, Pair 15

Directional asymmetry in the limbs, skull and pelvis of the silver fox (V. vulpes)

Kharlamova, A. V., Trut, L. N., Chase, K., Kukekova, A. V. & Lark, K. G., Dec 1 2010, In : Journal of Morphology. 271, 12, p. 1501-1508 8 p.

Research output: Contribution to journalArticle

Vulpes
pelvis
Vulpes vulpes
foxes
limbs (animal)

Exonic SINE insertion in STK38L causes canine early retinal degeneration (erd)

Goldstein, O., Kukekova, A. V., Aguirre, G. D. & Acland, G. M., Dec 1 2010, In : Genomics. 96, 6, p. 362-368 7 p.

Research output: Contribution to journalArticle

Short Interspersed Nucleotide Elements
Retinal Degeneration
Canidae
Exons
Genes
2009

Canine RD3 mutation establishes rod-cone dysplasia type 2 (rcd2) as ortholog of human and murine rd3

Kukekova, A. V., Goldstein, O., Johnson, J. L., Richardson, M. A., Pearce-Kelling, S. E., Swaroop, A., Friedman, J. S., Aguirre, G. D. & Acland, G. M., Feb 1 2009, In : Mammalian Genome. 20, 2, p. 109-123 15 p.

Research output: Contribution to journalArticle

Vertebrate Photoreceptor Cells
Canidae
Chromosome Mapping
Mutation
Open Reading Frames
2008

Measurement of segregating behaviors in experimental silver fox pedigrees

Kukekova, A. V., Trut, L. N., Chase, K., Shepeleva, D. V., Vladimirova, A. V., Kharlamova, A. V., Oskina, I. N., Stepika, A., Klebanov, S., Erb, H. N. & Acland, G. M., Mar 1 2008, In : Behavior genetics. 38, 2, p. 185-194 10 p.

Research output: Contribution to journalArticle

Vulpes vulpes
Pedigree
foxes
Silver
pedigree
2007

A meiotic linkage map of the silver fox, aligned and compared to the canine genome

Kukekova, A. V., Trut, L. N., Oskina, I. N., Johnson, J. L., Temnykh, S. V., Kharlamova, A. V., Shepeleva, D. V., Gulievich, R. G., Shikhevich, S. G., Graphodatsky, A. S., Aguirre, G. D. & Acland, G. M., Mar 1 2007, In : Genome Research. 17, 3, p. 387-399 13 p.

Research output: Contribution to journalArticle

Silver
Canidae
Genome
Dogs
Chromosomes

Breed relationships facilitate fine-mapping studies: A 7.8-kb deletion cosegregates with Collie eye anomaly across multiple dog breeds

Parker, H. G., Kukekova, A. V., Akey, D. T., Goldstein, O., Kirkness, E. F., Baysac, K. C., Mosher, D. S., Aguirre, G. D., Acland, G. M. & Ostrander, E. A., Nov 1 2007, In : Genome Research. 17, 11, p. 1562-1571 10 p.

Research output: Contribution to journalArticle

Linkage Disequilibrium
Dogs
Genes
Mutation
Haplotypes

Mapping of KIT adjacent sequences on canid autosomes and B chromosomes

Yudkin, D. V., Trifonov, V. A., Kukekova, A. V., Vorobieva, N. V., Rubtsova, N. V., Yang, F., Acland, G. M., Ferguson-Smith, M. A. & Graphodatsky, A. S., Jan 1 2007, In : Cytogenetic and Genome Research. 116, 1-2, p. 100-103 4 p.

Research output: Contribution to journalArticle

Chromosomes, Human, 4-5
Raccoon Dogs
Canidae
Mammalian Chromosomes
Pseudogenes
2006

Linkage mapping of canine rod cone dysplasia type 2 (rcd2) to CFA7, the canine orthologue of human 1q32

Kukekova, A. V., Nelson, J., Kuchtey, R. W., Lowe, J. K., Johnson, J. L., Ostrander, E. A., Aguirre, G. D. & Acland, G. M., Mar 1 2006, In : Investigative Ophthalmology and Visual Science. 47, 3, p. 1210-1215 6 p.

Research output: Contribution to journalArticle

Vertebrate Photoreceptor Cells
Chromosome Mapping
Canidae
Retinal Degeneration
Genes
2005

The proto-oncogene C-KIT maps to canid B-chromosomes

Graphodatsky, A. S., Kukekova, A. V., Yudkin, D. V., Trifonov, V. A., Vorobieva, N. V., Beklemisheva, V. R., Perelman, P. L., Graphodatskaya, D. A., Trut, L. N., Yang, F., Ferguson-Smith, M. A., Acland, G. M. & Aguirre, G. D., Jan 1 2005, In : Chromosome Research. 13, 2, p. 113-122 10 p.

Research output: Contribution to journalArticle

Chromosomes, Human, 4-5
Proto-Oncogenes
Raccoon Dogs
Canidae
Genome
2004

A marker set for construction of a genetic map of the silver fox (Vulpes vulpes)

Kukekova, A. V., Trut, L. N., Oskina, I. N., Kharlamova, A. V., Shikhevich, S. G., Kirkness, E. F., Aguirre, G. D. & Acland, G. M., May 1 2004, In : Journal of Heredity. 95, 3, p. 185-194 10 p.

Research output: Contribution to journalArticle

Silver
Dogs
Canidae
Microsatellite Repeats
Single Nucleotide Polymorphism
2003

Cloning and characterization of canine SHARP1 and its evaluation as a positional candidate for canine early retinal degeneration (erd)

Kukekova, A. V., Aguirre, G. D. & Acland, G. M., Jul 17 2003, In : Gene. 312, 1-2, p. 335-343 9 p.

Research output: Contribution to journalArticle

Retinal Degeneration
Canidae
Organism Cloning
Dog Diseases
Pedigree

Linkage mapping of the primary disease locus for collie eye anomaly

Lowe, J. K., Kukekova, A. V., Kirkness, E. F., Langlois, M. C., Aguirre, G. D., Acland, G. M. & Ostrander, E. A., Jul 1 2003, In : Genomics. 82, 1, p. 86-95 10 p.

Research output: Contribution to journalArticle

Chromosome Mapping
Dogs
Phenotype
Developmental Genes
Sclera
2000

Bacterial cell division proteins and genes

Kukekova, A. V. & Borkhsenius, S. N., 2000, In : Tsitologiya. 42, 6, p. 526-529 4 p.

Research output: Contribution to journalArticle

Cell Division
Proteins
Cytokinesis
Mycoplasma
Tubulin
1999

Characterization of Acholeplasma laidlawii ftsZ gene and its gene product

Kukekova, A. V., Malinin, A. Y., Ayala, J. A. & Borchsenius, S. N., Aug 19 1999, In : Biochemical and Biophysical Research Communications. 262, 1, p. 44-49 6 p.

Research output: Contribution to journalArticle

Acholeplasma laidlawii
Genes
Proteins
Bacterial Physiological Phenomena
Escherichia coli

Cloning and Expression of the Gene for Mycoplasma Key Cell-Division Protein FtsZ in Escherichia coli

Kukekova, A. V., Malinin, A. Y., Vonski, M. S. & Borkhsenius, S. N., 1999, In : Russian Journal of Genetics. 35, 3, p. 249-255 7 p.

Research output: Contribution to journalArticle

Mycoplasma
Cell Division
Organism Cloning
Escherichia coli
Gene Expression

Klonirovanie i ekspressiia gena kliuchevogo belka deleniia FtsZ mikoplazmy v Escherichia coli.

Translated title of the contribution: Cloning and expression of the gene for the mycoplasma key division protein FtsZ in Escherichia coliKukekova, A. V., Malinin, A. I., Vonskii, M. A. & Borkhsenius, S. N., Mar 1 1999, In : Genetika. 35, 2, p. 314-321 8 p.

Research output: Contribution to journalArticle

Mycoplasma
Organism Cloning
Escherichia coli
Gene Expression
Genes